Experiment set31S725 for Pseudomonas simiae WCS417
Time6-nophage
Group: no phage controlMedia: MM2_plus_SM_buffer
Culturing: fluoroDangl_ML3, 10mL in 25mL erlen, Aerobic, at 28.5 (C), shaken=orbital, continuous
By: Katie on 2/7/24
Specific Phenotypes
For 4 genes in this experiment
SEED Subsystems
| Subsystem | #Specific |
|---|---|
| Biotin biosynthesis | 1 |
| Glutamine, Glutamate, Aspartate and Asparagine Biosynthesis | 1 |
| Siderophore Pyoverdine | 1 |
Metabolic Maps
Color code by fitness: see overview map or list of maps.
Maps containing gene(s) with specific phenotypes:
- Ubiquinone and menaquinone biosynthesis
- Alanine and aspartate metabolism
- Histidine metabolism
- Tyrosine metabolism
- Tryptophan metabolism
- Benzoxazinone biosynthesis
- Cyanoamino acid metabolism
- Naphthalene and anthracene degradation
- Biotin metabolism
- Porphyrin and chlorophyll metabolism
- Carotenoid biosynthesis - General
- Nitrogen metabolism
- Phenylpropanoid biosynthesis
- Flavonoid biosynthesis
- Anthocyanin biosynthesis
- Alkaloid biosynthesis I
- Insect hormone biosynthesis
- Biosynthesis of alkaloids derived from shikimate pathway
MetaCyc Pathways
Pathways that contain genes with specific phenotypes:
| Pathway | #Steps | #Present | #Specific |
|---|---|---|---|
| L-asparagine degradation I | 1 | 1 | 1 |
| L-asparagine degradation III (mammalian) | 3 | 2 | 1 |
| biotin biosynthesis from 8-amino-7-oxononanoate I | 4 | 4 | 1 |
| superpathway of L-aspartate and L-asparagine biosynthesis | 4 | 3 | 1 |
| N-(1-deoxy-D-fructos-1-yl)-L-asparagine degradation | 5 | 2 | 1 |
| biotin biosynthesis I | 15 | 14 | 1 |