| | gene | name | fitness | t score | description | |
|---|
| b3261 | fis | +2.1 | 8.0 | DNA-binding protein Fis (NCBI) | compare |
| b0232 | yafN | +1.9 | 1.5 | predicted antitoxin of the YafO-YafN toxin-antitoxin system (NCBI) | compare |
| b3183 | obgE | +1.7 | 2.9 | GTPase involved in cell partioning and DNA repair (NCBI) | compare |
| b3643 | rph | +1.7 | 4.6 | ribonuclease PH (NCBI) | compare |
| b1709 | btuD | +1.4 | 2.2 | vitamin B12-transporter ATPase (NCBI) | compare |
| b4647 | mokA | +1.3 | 2.0 | no description | compare |
| b3052 | rfaE | +1.1 | 6.3 | fused heptose 7-phosphate kinase/heptose 1-phosphate adenyltransferase (NCBI) | compare |
| b0746 | valZ | +1.0 | 2.8 | tRNA-Val (NCBI) | compare |
| b2808 | gcvA | +1.0 | 3.9 | DNA-binding transcriptional dual regulator (NCBI) | compare |
| b0018 | mokC | +1.0 | 1.5 | regulatory protein for HokC, overlaps CDS of hokC (NCBI) | compare |
| b0740 | tolB | +0.9 | 4.3 | translocation protein TolB precursor (NCBI) | compare |
| b1861 | ruvA | +0.9 | 0.9 | Holliday junction DNA helicase motor protein (NCBI) | compare |
| b2934 | cmtB | +0.9 | 1.0 | predicted mannitol-specific enzyme IIA component of PTS (NCBI) | compare |
| b1524 | yneH | +0.9 | 1.2 | predicted glutaminase (NCBI) | compare |
| b4685 | yrbN | +0.9 | 3.1 | expressed protein (RefSeq) | compare |
| b0881 | clpS | +0.9 | 2.3 | ATP-dependent Clp protease adaptor protein ClpS (NCBI) | compare |
| b3621 | rfaC | +0.9 | 5.0 | ADP-heptose:LPS heptosyl transferase I (NCBI) | compare |
| b0059 | hepA | +0.9 | 7.4 | ATP-dependent helicase HepA (NCBI) | compare |
| b3387 | dam | +0.9 | 6.6 | DNA adenine methylase (NCBI) | compare |
| b1960 | vsr | +0.9 | 2.4 | DNA mismatch endonuclease of very short patch repair (NCBI) | compare |
| b3500 | gor | +0.9 | 1.7 | glutathione reductase (NCBI) | compare |
| b3260 | dusB | +0.8 | 2.5 | tRNA-dihydrouridine synthase B (NCBI) | compare |
| b4458 | oxyS | +0.8 | 0.7 | global regulatory RNA (NCBI) | compare |
| b3545 | proK | +0.8 | 1.1 | tRNA-Pro (NCBI) | compare |
| b3620 | rfaF | +0.8 | 4.0 | ADP-heptose:LPS heptosyltransferase II (NCBI) | compare |
| b4503 | yafF | +0.8 | 0.8 | no description | compare |
| b3890 | yiiF | +0.8 | 2.1 | orf, hypothetical protein (VIMSS) | compare |
| b1192 | ldcA | +0.8 | 3.1 | L,D-carboxypeptidase A (NCBI) | compare |
| b1523 | yneG | +0.7 | 1.9 | hypothetical protein (NCBI) | compare |
| b2471 | yffB | +0.7 | 2.8 | hypothetical protein (NCBI) | compare |
| b4702 | mgtL | +0.7 | 1.1 | regulatory leader peptide for mgtA (NCBI) | compare |
| b3181 | greA | +0.7 | 3.7 | transcription elongation factor: cleaves 3' nucleotide of paused mRNA (VIMSS) | compare |
| b0912 | ihfB | +0.7 | 3.6 | integration host factor subunit beta (NCBI) | compare |
| b1144 | ymfJ | +0.7 | 2.1 | orf, hypothetical protein (VIMSS) | compare |
| b2904 | gcvH | +0.7 | 2.1 | glycine cleavage system protein H (NCBI) | compare |
| b1141 | ymfG | +0.7 | 2.6 | e14 prophage; predicted excisionase (NCBI) | compare |
| b3858 | yihD | +0.7 | 2.3 | hypothetical protein (NCBI) | compare |
| b2189 | proL | +0.7 | 1.5 | tRNA-Pro (NCBI) | compare |
| b4000 | hupA | +0.7 | 2.6 | HU, DNA-binding transcriptional regulator, alpha subunit (NCBI) | compare |
| b1278 | pgpB | +0.7 | 2.1 | phosphatidylglycerophosphatase B (NCBI) | compare |
| b1569 | dicC | +0.7 | 2.8 | Qin prophage; DNA-binding transcriptional regulator for DicB (NCBI) | compare |
| b4370 | leuQ | +0.7 | 1.2 | tRNA-Leu (NCBI) | compare |
| b1842 | holE | +0.7 | 1.6 | DNA polymerase III, theta subunit (NCBI) | compare |
| b4595 | yciY | +0.7 | 1.8 | hypothetical protein (RefSeq) | compare |
| b1253 | yciA | +0.7 | 1.8 | predicted hydrolase (NCBI) | compare |
| b4201 | priB | +0.7 | 1.5 | primosomal replication protein N (NCBI) | compare |
| b4203 | rplI | +0.7 | 2.7 | 50S ribosomal protein L9 (NCBI) | compare |
| b0858 | ybjO | +0.7 | 1.9 | predicted inner membrane protein (NCBI) | compare |
| b0222 | lpcA | +0.7 | 2.3 | phosphoheptose isomerase (NCBI) | compare |
| b1961 | dcm | +0.6 | 1.2 | DNA cytosine methylase (NCBI) | compare |
| b0682 | ybfN | +0.6 | 2.2 | predicted lipoprotein (NCBI) | compare |
| b0739 | tolA | +0.6 | 2.2 | cell envelope integrity inner membrane protein TolA (NCBI) | compare |
| b2279 | nuoK | +0.6 | 1.2 | NADH dehydrogenase subunit K (NCBI) | compare |
| b0843 | ybjH | +0.6 | 2.5 | hypothetical protein (NCBI) | compare |
| b4102 | phnF | +0.6 | 2.9 | predicted DNA-binding transcriptional regulator of phosphonate uptake and biodegradation (NCBI) | compare |
| b4041 | plsB | +0.6 | 1.5 | glycerol-3-phosphate acyltransferase (VIMSS) | compare |
| b0549 | ybcO | +0.6 | 1.0 | DLP12 prophage; predicted protein (NCBI) | compare |
| b2398 | yfeC | +0.6 | 2.0 | orf, hypothetical protein (VIMSS) | compare |
| b2903 | gcvP | +0.6 | 4.9 | glycine dehydrogenase (NCBI) | compare |
| b3504 | yhiS | +0.6 | 0.6 | hypothetical protein (RefSeq) | compare |
| b2912 | ygfA | +0.6 | 2.2 | putative ligase (VIMSS) | compare |
| b0852 | rimK | +0.6 | 2.9 | ribosomal protein S6 modification protein (NCBI) | compare |
| b0862 | artQ | +0.6 | 1.8 | arginine transporter subunit (NCBI) | compare |
| b1542 | ydfI | +0.6 | 2.0 | predicted mannonate dehydrogenase (NCBI) | compare |
| b4594 | ymgJ | +0.6 | 1.9 | hypothetical protein (RefSeq) | compare |
| b1266 | yciV | +0.6 | 2.2 | hypothetical protein (NCBI) | compare |
| b0741 | pal | +0.6 | 2.3 | peptidoglycan-associated outer membrane lipoprotein (NCBI) | compare |
| b0688 | pgm | +0.6 | 2.0 | phosphoglucomutase (NCBI) | compare |
| b2317 | dedA | +0.6 | 1.9 | conserved inner membrane protein (NCBI) | compare |
| b3290 | trkA | +0.6 | 1.7 | potassium transporter peripheral membrane component (NCBI) | compare |
| b1300 | puuC | +0.6 | 3.0 | gamma-Glu-gamma-aminobutyraldehyde dehydrogenase, NAD(P)H-dependent (NCBI) | compare |
| b0752 | zitB | +0.6 | 1.9 | zinc transporter ZitB (NCBI) | compare |
| b1931 | yedK | +0.6 | 2.1 | hypothetical protein (NCBI) | compare |
| b2597 | yfiA | +0.6 | 1.3 | cold shock protein associated with 30S ribosomal subunit (NCBI) | compare |
| b4438 | cyaR | +0.6 | 1.1 | sRNA effector of ompX mRNA instability, cAMP-induced; hfq-dependent (RefSeq) | compare |
| b2990 | hybG | +0.6 | 1.7 | hydrogenase 2 accessory protein (NCBI) | compare |
| b1255 | yciC | +0.5 | 1.3 | hypothetical protein (NCBI) | compare |
| b1804 | rnd | +0.5 | 2.2 | ribonuclease D (NCBI) | compare |
| b2807 | ygdD | +0.5 | 2.6 | conserved inner membrane protein (NCBI) | compare |
| b1377 | ompN | +0.5 | 2.5 | outer membrane pore protein N, non-specific (NCBI) | compare |
| b1236 | galU | +0.5 | 2.3 | glucose-1-phosphate uridylyltransferase (NCBI) | compare |
| b2248 | yfaX | +0.5 | 1.0 | predicted DNA-binding transcriptional regulator (NCBI) | compare |
| b1628 | rsxB | +0.5 | 1.4 | electron transport complex protein RnfB (NCBI) | compare |
| b0389 | yaiA | +0.5 | 1.4 | hypothetical protein (NCBI) | compare |
| b4545 | ypdJ | +0.5 | 0.9 | no description | compare |
| b1180 | ycgM | +0.5 | 2.3 | predicted isomerase/hydrolase (NCBI) | compare |
| b1575 | dicB | +0.5 | 0.8 | Qin prophage; cell division inhibition protein (NCBI) | compare |
| b4171 | miaA | +0.5 | 1.6 | tRNA delta(2)-isopentenylpyrophosphate transferase (NCBI) | compare |
| b1789 | yeaL | +0.5 | 1.9 | conserved inner membrane protein (NCBI) | compare |
| b0661 | miaB | +0.5 | 3.5 | isopentenyl-adenosine A37 tRNA methylthiolase (NCBI) | compare |
| b3977 | tyrU | +0.5 | 0.5 | tRNA-Tyr (NCBI) | compare |
| b1827 | kdgR | +0.5 | 1.3 | predicted DNA-binding transcriptional regulator (NCBI) | compare |
| b2969 | yghE | +0.5 | 2.1 | predicted secretion pathway protein, L-type protein (pseudogene) (RefSeq) | compare |
| b2684 | mprA | +0.5 | 1.9 | DNA-binding transcriptional repressor of microcin B17 synthesis and multidrug efflux (NCBI) | compare |
| b2236 | yfaE | +0.5 | 1.8 | predicted 2Fe-2S cluster-containing protein (NCBI) | compare |
| b3157 | yhbT | +0.5 | 1.8 | predicted lipid carrier protein (NCBI) | compare |
| b1085 | b1085 | +0.5 | 1.6 | orf, hypothetical protein (VIMSS) | compare |
| b3341 | rpsG | +0.5 | 0.6 | 30S ribosomal protein S7 (NCBI) | compare |
| b1259 | yciG | +0.5 | 1.0 | orf, hypothetical protein (VIMSS) | compare |
| b2237 | inaA | +0.5 | 2.0 | hypothetical protein (NCBI) | compare |
| b3630 | rfaP | +0.5 | 3.4 | kinase that phosphorylates core heptose of lipopolysaccharide (NCBI) | compare |
| b2125 | yehT | +0.5 | 2.0 | orf, hypothetical protein (VIMSS) | compare |
| b1531 | marA | +0.5 | 1.3 | multiple antibiotic resistance; transcriptional activator of defense systems (VIMSS) | compare |
| b4519 | icdC | +0.5 | 1.8 | no description | compare |
| b4656 | yjhY | +0.5 | 3.3 | no description | compare |
| b2688 | gshA | +0.5 | 2.4 | glutamate--cysteine ligase (NCBI) | compare |
| b3619 | rfaD | +0.5 | 2.1 | ADP-L-glycero-D-mannoheptose-6-epimerase, NAD(P)-binding (NCBI) | compare |
| b2175 | spr | +0.5 | 1.5 | predicted peptidase, outer membrane lipoprotein (NCBI) | compare |
| b2217 | rcsB | +0.5 | 3.2 | DNA-binding response regulator in two-component regulatory system with RcsC and YojN (NCBI) | compare |
| b0296 | ykgM | +0.5 | 0.8 | 50S ribosomal protein L31 (NCBI) | compare |
| b2618 | b2618 | +0.5 | 1.3 | orf, hypothetical protein (VIMSS) | compare |
| b4538 | yoeF | +0.5 | 0.9 | hypothetical protein (RefSeq) | compare |
| b3775 | ppiC | +0.5 | 1.8 | peptidyl-prolyl cis-trans isomerase C (rotamase C) (NCBI) | compare |
| b3626 | rfaJ | +0.5 | 2.1 | UDP-D-glucose:(galactosyl)lipopolysaccharide glucosyltransferase (NCBI) | compare |
| b4581 | ybeM | +0.5 | 1.6 | no description | compare |
| b1270 | btuR | +0.5 | 2.6 | cob(I)yrinic acid a,c-diamide adenosyltransferase (NCBI) | compare |
| b1151 | ymfO | +0.4 | 1.4 | e14 prophage; conserved protein (RefSeq) | compare |
| b2170 | setB | +0.4 | 2.0 | lactose/glucose efflux system (NCBI) | compare |
| b1247 | oppF | +0.4 | 1.4 | oligopeptide transporter subunit (NCBI) | compare |
| b1176 | minC | +0.4 | 1.6 | septum formation inhibitor (NCBI) | compare |
| b2301 | yfcF | +0.4 | 1.5 | predicted enzyme (NCBI) | compare |
| b1556 | b1556 | +0.4 | 0.8 | orf, hypothetical protein (VIMSS) | compare |
| b1412 | azoR | +0.4 | 1.5 | acyl carrier protein phosphodiesterase (NCBI) | compare |
| b3238 | yhcN | +0.4 | 1.2 | orf, hypothetical protein (VIMSS) | compare |
| b4568 | ytjA | +0.4 | 1.0 | predicted protein (RefSeq) | compare |
| b3206 | npr | +0.4 | 1.6 | phosphohistidinoprotein-hexose phosphotransferase component of N-regulated PTS system (Npr) (NCBI) | compare |
| b1294 | sapA | +0.4 | 2.5 | predicted antimicrobial peptide transporter subunit (NCBI) | compare |
| b0836 | yliH | +0.4 | 1.1 | hypothetical protein (NCBI) | compare |
| b4585 | sroB | +0.4 | 0.6 | Novel sRNA, function unknown (RefSeq) | compare |
| b2951 | yggS | +0.4 | 1.6 | predicted enzyme (NCBI) | compare |
| b0737 | tolQ | +0.4 | 1.5 | membrane spanning protein in TolA-TolQ-TolR complex (NCBI) | compare |
| b3024 | ygiW | +0.4 | 1.3 | hypothetical protein (NCBI) | compare |
| b2905 | gcvT | +0.4 | 2.5 | glycine cleavage system aminomethyltransferase T (NCBI) | compare |
| b2111 | yehD | +0.4 | 1.5 | predicted fimbrial-like adhesin protein (NCBI) | compare |
| b4521 | ycgI | +0.4 | 1.6 | hypothetical protein (NCBI) | compare |
| b3787 | rffD | +0.4 | 3.0 | UDP-N-acetyl-D-mannosaminuronic acid dehydrogenase (NCBI) | compare |
| b0710 | ybgI | +0.4 | 1.4 | conserved metal-binding protein (NCBI) | compare |
| b4017 | arpA | +0.4 | 2.0 | regulator of acetyl CoA synthetase (NCBI) | compare |
| b4692 | oweE | +0.4 | 1.5 | no description | compare |
| b1930 | yedF | +0.4 | 1.4 | hypothetical protein (NCBI) | compare |
| b2095 | gatZ | +0.4 | 2.4 | D-tagatose 1,6-bisphosphate aldolase 2, subunit (NCBI) | compare |
| b3074 | ygjH | +0.4 | 1.7 | hypothetical protein (NCBI) | compare |
| b1602 | pntB | +0.4 | 1.8 | pyridine nucleotide transhydrogenase (NCBI) | compare |
| b0560 | nohB | +0.4 | 0.5 | DLP12 prophage; DNA packaging protein (NCBI) | compare |
| b3512 | GadE | +0.4 | 1.8 | acid-responsive regulator of gadA and gadBC (Katherine Huang) | compare |
| b1109 | ndh | +0.4 | 1.4 | respiratory NADH dehydrogenase 2/cupric reductase (NCBI) | compare |
| b1639 | ydhA | +0.4 | 2.1 | orf, hypothetical protein (VIMSS) | compare |
| b0885 | aat | +0.4 | 2.1 | leucyl/phenylalanyl-tRNA--protein transferase (NCBI) | compare |
| b4415 | hokE | +0.4 | 1.4 | toxic polypeptide, small (NCBI) | compare |
| b0866 | ybjQ | +0.4 | 0.6 | hypothetical protein (NCBI) | compare |
| b0099 | mutT | +0.4 | 0.8 | nucleoside triphosphate pyrophosphohydrolase, marked preference for dGTP (NCBI) | compare |
| b0005 | yaaX | +0.4 | 1.4 | hypothetical protein (NCBI) | compare |
| b4076 | nrfG | +0.4 | 1.5 | heme lyase (NrfEFG) for insertion of heme into c552, subunit NrfG (NCBI) | compare |
| b1581 | rspA | +0.4 | 0.7 | predicted dehydratase (NCBI) | compare |
| b1976 | b1976 | +0.4 | 1.2 | orf, hypothetical protein (VIMSS) | compare |
| b4375 | prfC | +0.4 | 1.5 | peptide chain release factor 3 (NCBI) | compare |
| b1946 | fliN | +0.4 | 1.9 | flagellar motor switch protein (NCBI) | compare |
| b1307 | pspD | +0.4 | 0.8 | peripheral inner membrane phage-shock protein (NCBI) | compare |
| b1760 | ynjH | +0.4 | 1.4 | hypothetical protein (NCBI) | compare |
| b2792 | yqcC | +0.4 | 2.1 | hypothetical protein (NCBI) | compare |
| b0423 | thiI | +0.4 | 1.9 | thiamine biosynthesis protein ThiI (NCBI) | compare |
| b4571 | wbbL | +0.4 | 1.1 | no description | compare |
| b3998 | nfi | +0.4 | 2.4 | endonuclease V (deoxyinosine 3'endoduclease) (VIMSS) | compare |
| b3037 | ygiB | +0.4 | 1.7 | conserved outer membrane protein (RefSeq) | compare |
| b1148 | ymfM | +0.4 | 0.9 | e14 prophage; predicted protein (NCBI) | compare |
| b4451 | ryhB | +0.4 | 0.9 | Regulatory sRNA mediating positive Fur regulon response; requires Hfq for function; global iron regulator; degraded by RNase E when bound to target (RefSeq) | compare |
| b2136 | yohD | +0.4 | 1.6 | orf, hypothetical protein (VIMSS) | compare |
| b1156 | tfaE | +0.4 | 1.5 | e14 prophage; predicted tail fiber assembly protein (NCBI) | compare |
| b4408 | csrB | +0.4 | 1.3 | CsrA-binding sRNA, antagonizing CsrA regulation (NCBI) | compare |
| b2829 | ptsP | +0.4 | 2.9 | fused PTS enzyme: PEP-protein phosphotransferase (enzyme I)/GAF domain containing protein (NCBI) | compare |
| b4609 | ryfD | +0.4 | 1.2 | Novel sRNA, function unknown (RefSeq) | compare |
| b3264 | envR | +0.4 | 1.5 | DNA-binding transcriptional regulator (NCBI) | compare |
| b3889 | yiiE | +0.4 | 1.1 | predicted transcriptional regulator (RefSeq) | compare |
| b0830 | yliB | +0.4 | 1.9 | predicted peptide transporter subunit: periplasmic-binding component of ABC superfamily (NCBI) | compare |
| b1642 | slyA | +0.4 | 0.6 | transcriptional regulator for cryptic hemolysin (VIMSS) | compare |
| b0616 | citE | +0.4 | 1.1 | citrate lyase beta chain (acyl lyase subunit) (VIMSS) | compare |
| b3786 | rffE | +0.4 | 2.7 | UDP-N-acetyl glucosamine-2-epimerase (NCBI) | compare |
| b3292 | zntR | +0.4 | 1.3 | zinc-responsive transcriptional regulator (NCBI) | compare |
| b2565 | recO | +0.4 | 1.9 | DNA repair protein RecO (NCBI) | compare |
| b2778 | ygcG | +0.4 | 1.7 | orf, hypothetical protein (VIMSS) | compare |
| b0759 | galE | +0.4 | 1.9 | UDP-galactose-4-epimerase (VIMSS) | compare |
| b1674 | ydhY | +0.4 | 1.7 | predicted 4Fe-4S ferridoxin-type protein (NCBI) | compare |
| b3670 | ilvN | +0.4 | 2.1 | acetolactate synthase small subunit (NCBI) | compare |
| b2956 | yggM | +0.4 | 1.7 | hypothetical protein (NCBI) | compare |
| b3871 | bipA | +0.4 | 2.7 | GTP-binding protein (NCBI) | compare |
| b4135 | yjdC | +0.4 | 1.9 | orf, hypothetical protein (VIMSS) | compare |
| b1336 | ydaH | +0.4 | 1.7 | putative pump protein (transport) (VIMSS) | compare |
| b3686 | ibpB | +0.4 | 2.1 | heat shock chaperone (NCBI) | compare |
| b2050 | wcaI | +0.4 | 1.5 | predicted glycosyl transferase (NCBI) | compare |
| b4606 | ypfM | +0.4 | 1.2 | hypothetical protein (RefSeq) | compare |
| b0979 | appB | +0.4 | 1.2 | cytochrome bd-II oxidase, subunit II (NCBI) | compare |
| b0137 | yadL | +0.4 | 2.3 | predicted fimbrial-like adhesin protein (NCBI) | compare |
| b4650 | yibS | +0.4 | 1.1 | no description | compare |
| b2393 | nupC | +0.4 | 1.8 | nucleoside (except guanosine) transporter (NCBI) | compare |
| b1429 | tehA | +0.4 | 0.4 | potassium-tellurite ethidium and proflavin transporter (NCBI) | compare |
| b1515 | lsrD | +0.4 | 1.3 | AI2 transporter (NCBI) | compare |
| b1728 | ydjM | +0.4 | 0.8 | predicted inner membrane protein regulated by LexA (RefSeq) | compare |
| b4104 | phnE | +0.4 | 1.4 | phosphonate/organophosphate ester transporter subunit (NCBI) | compare |
| b0210 | yafE | +0.4 | 1.1 | predicted S-adenosyl-L-methionine-dependent methyltransferase (NCBI) | compare |
| b0849 | grxA | +0.4 | 1.3 | glutaredoxin 1, redox coenzyme for ribonucleotide reductase (RNR1a) (NCBI) | compare |