| | gene | name | fitness | t score | description | |
|---|
| b3261 | fis | +2.5 | 10.2 | DNA-binding protein Fis (NCBI) | compare |
| b3979 | thrT | +1.9 | 1.6 | tRNA-Thr (NCBI) | compare |
| b3643 | rph | +1.7 | 4.2 | ribonuclease PH (NCBI) | compare |
| b0059 | hepA | +1.3 | 11.8 | ATP-dependent helicase HepA (NCBI) | compare |
| b1936 | intG | +1.2 | 2.1 | predicted defective phage integrase (pseudogene) (RefSeq) | compare |
| b2904 | gcvH | +1.2 | 4.8 | glycine cleavage system protein H (NCBI) | compare |
| b3341 | rpsG | +1.2 | 2.6 | 30S ribosomal protein S7 (NCBI) | compare |
| b3977 | tyrU | +1.2 | 2.0 | tRNA-Tyr (NCBI) | compare |
| b2808 | gcvA | +1.2 | 6.3 | DNA-binding transcriptional dual regulator (NCBI) | compare |
| b2903 | gcvP | +1.0 | 8.9 | glycine dehydrogenase (NCBI) | compare |
| b1724 | ydiZ | +1.0 | 2.1 | hypothetical protein (NCBI) | compare |
| b1164 | ycgZ | +1.0 | 2.9 | hypothetical protein (NCBI) | compare |
| b2071 | yegJ | +1.0 | 2.2 | hypothetical protein (NCBI) | compare |
| b2058 | wcaB | +0.9 | 2.0 | predicted acyl transferase (NCBI) | compare |
| b2189 | proL | +0.9 | 2.8 | tRNA-Pro (NCBI) | compare |
| b0746 | valZ | +0.9 | 3.1 | tRNA-Val (NCBI) | compare |
| b3260 | dusB | +0.9 | 2.4 | tRNA-dihydrouridine synthase B (NCBI) | compare |
| b1038 | csgF | +0.8 | 3.0 | predicted transport protein (NCBI) | compare |
| b2905 | gcvT | +0.8 | 6.1 | glycine cleavage system aminomethyltransferase T (NCBI) | compare |
| b1462 | b1462 | +0.8 | 3.7 | orf, hypothetical protein (VIMSS) | compare |
| b0232 | yafN | +0.8 | 0.5 | predicted antitoxin of the YafO-YafN toxin-antitoxin system (NCBI) | compare |
| b4000 | hupA | +0.8 | 5.1 | HU, DNA-binding transcriptional regulator, alpha subunit (NCBI) | compare |
| b0881 | clpS | +0.8 | 2.2 | ATP-dependent Clp protease adaptor protein ClpS (NCBI) | compare |
| b4460 | araH | +0.8 | 1.4 | fused L-arabinose transporter subunits of ABC superfamily: membrane components (RefSeq) | compare |
| b3387 | dam | +0.8 | 6.9 | DNA adenine methylase (NCBI) | compare |
| b1942 | fliJ | +0.8 | 2.2 | flagellar biosynthesis chaperone (NCBI) | compare |
| b1278 | pgpB | +0.8 | 3.4 | phosphatidylglycerophosphatase B (NCBI) | compare |
| b3181 | greA | +0.8 | 3.1 | transcription elongation factor: cleaves 3' nucleotide of paused mRNA (VIMSS) | compare |
| b1728 | ydjM | +0.7 | 2.5 | predicted inner membrane protein regulated by LexA (RefSeq) | compare |
| b1793 | yoaF | +0.7 | 3.1 | conserved outer membrane protein (NCBI) | compare |
| b2934 | cmtB | +0.7 | 0.9 | predicted mannitol-specific enzyme IIA component of PTS (NCBI) | compare |
| b1434 | ydcN | +0.7 | 2.3 | predicted DNA-binding transcriptional regulator (NCBI) | compare |
| b0014 | dnaK | +0.7 | 2.5 | molecular chaperone DnaK (NCBI) | compare |
| b2688 | gshA | +0.7 | 5.3 | glutamate--cysteine ligase (NCBI) | compare |
| b1334 | fnr | +0.7 | 2.4 | DNA-binding transcriptional dual regulator, global regulator of anaerobic growth (NCBI) | compare |
| b2504 | yfgG | +0.7 | 1.6 | Negative regulator of nickel and cobalt uptake (YfgG) (from data) | compare |
| b1429 | tehA | +0.7 | 0.9 | potassium-tellurite ethidium and proflavin transporter (NCBI) | compare |
| b1190 | dadX | +0.7 | 3.7 | alanine racemase (NCBI) | compare |
| b1357 | ydaS | +0.7 | 1.8 | Rac prophage; predicted DNA-binding transcriptional regulator (NCBI) | compare |
| b0865 | ybjP | +0.7 | 2.7 | predicted lipoprotein (NCBI) | compare |
| b2951 | yggS | +0.7 | 4.4 | predicted enzyme (NCBI) | compare |
| b2684 | mprA | +0.7 | 2.3 | DNA-binding transcriptional repressor of microcin B17 synthesis and multidrug efflux (NCBI) | compare |
| b0998 | torD | +0.7 | 1.4 | chaperone protein TorD (NCBI) | compare |
| b0051 | ksgA | +0.7 | 3.4 | dimethyladenosine transferase (NCBI) | compare |
| b3844 | fre | +0.7 | 3.5 | NAD(P)H-flavin reductase (NCBI) | compare |
| b2125 | yehT | +0.7 | 3.1 | orf, hypothetical protein (VIMSS) | compare |
| b2829 | ptsP | +0.6 | 5.3 | fused PTS enzyme: PEP-protein phosphotransferase (enzyme I)/GAF domain containing protein (NCBI) | compare |
| b2300 | yfcE | +0.6 | 2.9 | orf, hypothetical protein (VIMSS) | compare |
| b1847 | yebF | +0.6 | 1.6 | predicted protein (RefSeq) | compare |
| b1542 | ydfI | +0.6 | 2.4 | predicted mannonate dehydrogenase (NCBI) | compare |
| b2659 | b2659 | +0.6 | 1.9 | orf, hypothetical protein (VIMSS) | compare |
| b2990 | hybG | +0.6 | 1.4 | hydrogenase 2 accessory protein (NCBI) | compare |
| b0018 | mokC | +0.6 | 1.2 | regulatory protein for HokC, overlaps CDS of hokC (NCBI) | compare |
| b4533 | ynfO | +0.6 | 1.9 | Qin prophage; predicted protein (NCBI) | compare |
| b1642 | slyA | +0.6 | 1.4 | transcriptional regulator for cryptic hemolysin (VIMSS) | compare |
| b4201 | priB | +0.6 | 1.9 | primosomal replication protein N (NCBI) | compare |
| b4458 | oxyS | +0.6 | 1.1 | global regulatory RNA (NCBI) | compare |
| b4538 | yoeF | +0.6 | 1.3 | hypothetical protein (RefSeq) | compare |
| b1726 | yniB | +0.6 | 2.0 | predicted inner membrane protein (NCBI) | compare |
| b3052 | rfaE | +0.6 | 3.0 | fused heptose 7-phosphate kinase/heptose 1-phosphate adenyltransferase (NCBI) | compare |
| b2080 | b2080 | +0.6 | 1.8 | orf, hypothetical protein (VIMSS) | compare |
| b1849 | purT | +0.6 | 3.3 | phosphoribosylglycinamide formyltransferase 2 (NCBI) | compare |
| b1841 | yobA | +0.6 | 1.3 | hypothetical protein (NCBI) | compare |
| b4532 | yncN | +0.6 | 3.1 | orf, hypothetical protein (VIMSS) | compare |
| b1085 | b1085 | +0.6 | 1.2 | orf, hypothetical protein (VIMSS) | compare |
| b1259 | yciG | +0.6 | 1.3 | orf, hypothetical protein (VIMSS) | compare |
| b1824 | yobF | +0.5 | 2.2 | hypothetical protein (NCBI) | compare |
| b0661 | miaB | +0.5 | 4.6 | isopentenyl-adenosine A37 tRNA methylthiolase (NCBI) | compare |
| b0296 | ykgM | +0.5 | 1.7 | 50S ribosomal protein L31 (NCBI) | compare |
| b0440 | hupB | +0.5 | 2.4 | HU, DNA-binding transcriptional regulator, beta subunit (NCBI) | compare |
| b2432 | yfeY | +0.5 | 2.2 | hypothetical protein (NCBI) | compare |
| b1454 | yncG | +0.5 | 2.1 | predicted enzyme (NCBI) | compare |
| b1299 | puuR | +0.5 | 3.2 | DNA-binding transcriptional repressor (NCBI) | compare |
| b3620 | rfaF | +0.5 | 3.1 | ADP-heptose:LPS heptosyltransferase II (NCBI) | compare |
| b1842 | holE | +0.5 | 0.9 | DNA polymerase III, theta subunit (NCBI) | compare |
| b1823 | cspC | +0.5 | 1.5 | stress protein, member of the CspA-family (NCBI) | compare |
| b4030 | yjbA | +0.5 | 2.2 | phosphate-starvation-inducible protein PsiE (NCBI) | compare |
| b3229 | sspA | +0.5 | 2.4 | stringent starvation protein A (NCBI) | compare |
| b1575 | dicB | +0.5 | 1.3 | Qin prophage; cell division inhibition protein (NCBI) | compare |
| b2597 | yfiA | +0.5 | 1.5 | cold shock protein associated with 30S ribosomal subunit (NCBI) | compare |
| b1977 | asnT | +0.5 | 1.3 | tRNA-Asn (NCBI) | compare |
| b1138 | ymfE | +0.5 | 1.1 | e14 prophage; predicted inner membrane protein (NCBI) | compare |
| b4171 | miaA | +0.5 | 2.0 | tRNA delta(2)-isopentenylpyrophosphate transferase (NCBI) | compare |
| b4653 | yicT | +0.5 | 1.4 | no description | compare |
| b1109 | ndh | +0.5 | 2.8 | respiratory NADH dehydrogenase 2/cupric reductase (NCBI) | compare |
| b4592 | yccB | +0.5 | 1.5 | hypothetical protein (RefSeq) | compare |
| b1961 | dcm | +0.5 | 1.1 | DNA cytosine methylase (NCBI) | compare |
| b2330 | yfcB | +0.5 | 0.8 | putative adenine-specific methylase (VIMSS) | compare |
| b1148 | ymfM | +0.5 | 1.9 | e14 prophage; predicted protein (NCBI) | compare |
| b3119 | tdcR | +0.5 | 1.5 | threonine dehydratase operon activator protein (VIMSS) | compare |
| b1222 | narX | +0.5 | 2.6 | sensory histidine kinase in two-component regulatory system with NarL (NCBI) | compare |
| b1629 | rsxC | +0.5 | 2.7 | electron transport complex protein RnfC (NCBI) | compare |
| b1569 | dicC | +0.5 | 2.0 | Qin prophage; DNA-binding transcriptional regulator for DicB (NCBI) | compare |
| b0196 | rcsF | +0.5 | 2.0 | predicted outer membrane protein, signal (NCBI) | compare |
| b1914 | uvrY | +0.5 | 2.4 | response regulator (NCBI) | compare |
| b1426 | ydcH | +0.5 | 1.2 | orf, hypothetical protein (VIMSS) | compare |
| b0630 | lipB | +0.5 | 1.2 | protein of lipoate biosynthesis (VIMSS) | compare |
| b3998 | nfi | +0.5 | 3.1 | endonuclease V (deoxyinosine 3'endoduclease) (VIMSS) | compare |
| b1651 | gloA | +0.5 | 2.2 | glyoxalase I, Ni-dependent (NCBI) | compare |
| b2050 | wcaI | +0.5 | 1.7 | predicted glycosyl transferase (NCBI) | compare |
| b2618 | b2618 | +0.5 | 1.8 | orf, hypothetical protein (VIMSS) | compare |
| b3484 | yhhI | +0.4 | 1.0 | predicted transposase (NCBI) | compare |
| b1013 | ycdC | +0.4 | 1.8 | predicted DNA-binding transcriptional regulator (NCBI) | compare |
| b1090 | plsX | +0.4 | 2.0 | glycerolphosphate auxotrophy in plsB background (VIMSS) | compare |
| b4450 | arcZ | +0.4 | 1.8 | sRNA antisense regulator of tpx and sdaA, Hfq-dependent (RefSeq) | compare |
| b1650 | nemA | +0.4 | 2.2 | N-ethylmaleimide reductase, FMN-linked (NCBI) | compare |
| b2786 | barA | +0.4 | 4.1 | hybrid sensory histidine kinase, in two-component regulatory system with UvrY (NCBI) | compare |
| b3621 | rfaC | +0.4 | 2.6 | ADP-heptose:LPS heptosyl transferase I (NCBI) | compare |
| b3545 | proK | +0.4 | 0.9 | tRNA-Pro (NCBI) | compare |
| b3206 | npr | +0.4 | 2.6 | phosphohistidinoprotein-hexose phosphotransferase component of N-regulated PTS system (Npr) (NCBI) | compare |
| b1355 | b1355 | +0.4 | 2.0 | orf, hypothetical protein (VIMSS) | compare |
| b4203 | rplI | +0.4 | 1.9 | 50S ribosomal protein L9 (NCBI) | compare |
| b3199 | yrbK | +0.4 | 1.2 | hypothetical protein (NCBI) | compare |
| b1233 | ychJ | +0.4 | 1.9 | hypothetical protein (NCBI) | compare |
| b4363 | yjjB | +0.4 | 1.9 | conserved inner membrane protein (RefSeq) | compare |
| b2532 | yfhQ | +0.4 | 1.9 | predicted methyltransferase (NCBI) | compare |
| b1418 | cybB | +0.4 | 1.5 | cytochrome b(561) (VIMSS) | compare |
| b0222 | lpcA | +0.4 | 1.5 | phosphoheptose isomerase (NCBI) | compare |
| b2572 | rseA | +0.4 | 2.6 | anti-sigma factor (NCBI) | compare |
| b3644 | yicC | +0.4 | 2.0 | hypothetical protein (NCBI) | compare |
| b2912 | ygfA | +0.4 | 1.8 | putative ligase (VIMSS) | compare |
| b2301 | yfcF | +0.4 | 2.2 | predicted enzyme (NCBI) | compare |
| b1627 | rsxA | +0.4 | 2.0 | Na(+)-translocating NADH-quinone reductase subunit E (NCBI) | compare |
| b1253 | yciA | +0.4 | 1.3 | predicted hydrolase (NCBI) | compare |
| b4373 | rimI | +0.4 | 1.0 | ribosomal-protein-alanine N-acetyltransferase (NCBI) | compare |
| b3631 | rfaG | +0.4 | 3.6 | glucosyltransferase I (NCBI) | compare |
| b0504 | ybbS | +0.4 | 1.5 | DNA-binding transcriptional activator of the allD operon (NCBI) | compare |
| b1241 | adhE | +0.4 | 3.0 | fused acetaldehyde-CoA dehydrogenase/iron-dependent alcohol dehydrogenase/pyruvate-formate lyase deactivase (NCBI) | compare |
| b1758 | b1758 | +0.4 | 0.7 | putative cytochrome oxidase (VIMSS) | compare |
| b2567 | rnc | +0.4 | 0.4 | ribonuclease III (NCBI) | compare |
| b1689 | b1689 | +0.4 | 1.7 | orf, hypothetical protein (VIMSS) | compare |
| b1988 | nac | +0.4 | 1.8 | DNA-binding transcriptional dual regulator of nitrogen assimilation (NCBI) | compare |
| b2435 | amiA | +0.4 | 1.7 | N-acetylmuramoyl-l-alanine amidase I (NCBI) | compare |
| b1461 | ydcE | +0.4 | 1.1 | 4-oxalocrotonate tautomerase (NCBI) | compare |
| b3706 | trmE | +0.4 | 1.5 | tRNA modification GTPase (NCBI) | compare |
| b1300 | puuC | +0.4 | 1.7 | gamma-Glu-gamma-aminobutyraldehyde dehydrogenase, NAD(P)H-dependent (NCBI) | compare |
| b2539 | hcaF | +0.4 | 1.9 | 3-phenylpropionate dioxygenase, small (beta) subunit (NCBI) | compare |
| b1630 | rsxD | +0.4 | 2.8 | electron transport complex protein RnfD (NCBI) | compare |
| b0195 | yaeB | +0.4 | 2.8 | hypothetical protein (NCBI) | compare |
| b1539 | ydfG | +0.4 | 1.4 | L-allo-threonine dehydrogenase, NAD(P)-binding (NCBI) | compare |
| b0949 | uup | +0.4 | 2.1 | fused predicted transporter subunits of ABC superfamily: ATP-binding components (NCBI) | compare |
| b3391 | hofQ | +0.4 | 3.1 | predicted fimbrial transporter (NCBI) | compare |
| b1021 | ycdP | +0.4 | 1.9 | predicted inner membrane protein (NCBI) | compare |
| b4371 | rsmC | +0.4 | 2.6 | 16S ribosomal RNA m2G1207 methyltransferase (NCBI) | compare |
| b1930 | yedF | +0.4 | 2.3 | hypothetical protein (NCBI) | compare |
| b1514 | lsrC | +0.4 | 0.7 | AI2 transporter (NCBI) | compare |
| b4589 | ylcI | +0.4 | 1.3 | hypothetical protein (RefSeq) | compare |
| b3858 | yihD | +0.4 | 1.7 | hypothetical protein (NCBI) | compare |
| b4436 | ryeC | +0.4 | 0.6 | Novel sRNA, function unknown; paralogous to the other QUAD sRNA genes unknown (RefSeq) | compare |
| b1960 | vsr | +0.4 | 1.8 | DNA mismatch endonuclease of very short patch repair (NCBI) | compare |
| b2237 | inaA | +0.4 | 1.9 | hypothetical protein (NCBI) | compare |
| b3929 | rraA | +0.4 | 2.3 | ribonuclease activity regulator protein RraA (NCBI) | compare |
| b4011 | yjaA | +0.4 | 1.2 | hypothetical protein (NCBI) | compare |
| b4227 | ytfQ | +0.4 | 2.1 | predicted sugar transporter subunit: periplasmic-binding component of ABC superfamily (NCBI) | compare |
| b3871 | bipA | +0.4 | 2.9 | GTP-binding protein (NCBI) | compare |
| b1916 | sdiA | +0.4 | 2.7 | DNA-binding transcriptional activator (NCBI) | compare |
| b1827 | kdgR | +0.4 | 1.7 | predicted DNA-binding transcriptional regulator (NCBI) | compare |
| b1518 | lsrG | +0.4 | 1.0 | autoinducer-2 (AI-2) modifying protein LsrG (NCBI) | compare |
| b1984 | asnW | +0.3 | 0.7 | tRNA-Asn (NCBI) | compare |
| b2741 | rpoS | +0.3 | 2.1 | RNA polymerase sigma factor (NCBI) | compare |
| b3624 | rfaZ | +0.3 | 1.1 | lipopolysaccharide core biosynthesis protein (NCBI) | compare |
| b2357 | yfdN | +0.3 | 1.3 | CPS-53 (KpLE1) prophage; predicted protein (NCBI) | compare |
| b0999 | cbpM | +0.3 | 1.6 | modulator of CbpA co-chaperone (NCBI) | compare |
| b4609 | ryfD | +0.3 | 1.0 | Novel sRNA, function unknown (RefSeq) | compare |
| b1922 | fliA | +0.3 | 2.0 | flagellar biosynthesis; alternative sigma factor 28; regulation of flagellar operons (VIMSS) | compare |
| b4622 | ytcA | +0.3 | 1.8 | hypothetical protein (RefSeq) | compare |
| b2040 | rfbD | +0.3 | 2.7 | dTDP-4-dehydrorhamnose reductase subunit, NAD(P)-binding, of dTDP-L-rhamnose synthase (NCBI) | compare |
| b4066 | yjcF | +0.3 | 0.4 | hypothetical protein (NCBI) | compare |
| b3786 | rffE | +0.3 | 2.9 | UDP-N-acetyl glucosamine-2-epimerase (NCBI) | compare |
| b1419 | ydcA | +0.3 | 2.0 | hypothetical protein (NCBI) | compare |
| b2569 | lepA | +0.3 | 1.6 | GTP-binding protein LepA (NCBI) | compare |
| b4695 | ykgT | +0.3 | 1.2 | no description | compare |
| b1431 | ydcL | +0.3 | 2.1 | predicted lipoprotein (NCBI) | compare |
| b1704 | aroH | +0.3 | 1.8 | 3-deoxy-D-arabino-heptulosonate-7-phosphate synthase, tryptophan repressible (NCBI) | compare |
| b4606 | ypfM | +0.3 | 1.9 | hypothetical protein (RefSeq) | compare |
| b4519 | icdC | +0.3 | 1.5 | no description | compare |
| b4418 | sraB | +0.3 | 1.1 | unknown RNA (NCBI) | compare |
| b1795 | yeaQ | +0.3 | 1.5 | conserved inner membrane protein (NCBI) | compare |
| b1465 | narV | +0.3 | 0.7 | nitrate reductase 2 (NRZ), gamma subunit (NCBI) | compare |
| b4655 | ythA | +0.3 | 0.7 | expressed protein (RefSeq) | compare |
| b0236 | prfH | +0.3 | 1.4 | peptide chain release factor 2 (NCBI) | compare |
| b2266 | elaB | +0.3 | 1.2 | hypothetical protein (NCBI) | compare |
| b1632 | rsxE | +0.3 | 2.6 | NADH-ubiquinone oxidoreductase (NCBI) | compare |
| b4215 | ytfI | +0.3 | 0.9 | hypothetical protein (NCBI) | compare |
| b0365 | tauA | +0.3 | 2.0 | taurine transport system periplasmic protein (VIMSS) | compare |
| b1523 | yneG | +0.3 | 0.9 | hypothetical protein (NCBI) | compare |
| b3842 | rfaH | +0.3 | 2.2 | transcriptional activator RfaH (NCBI) | compare |
| b1633 | nth | +0.3 | 1.8 | DNA glycosylase and apyrimidinic (AP) lyase (endonuclease III) (NCBI) | compare |
| b1141 | ymfG | +0.3 | 1.9 | e14 prophage; predicted excisionase (NCBI) | compare |
| b2156 | lysP | +0.3 | 2.1 | lysine transporter (NCBI) | compare |
| b2947 | gshB | +0.3 | 1.8 | glutathione synthetase (NCBI) | compare |
| b0759 | galE | +0.3 | 2.1 | UDP-galactose-4-epimerase (VIMSS) | compare |
| b3085 | ygjP | +0.3 | 1.5 | orf, hypothetical protein (VIMSS) | compare |
| b1725 | yniA | +0.3 | 1.6 | predicted phosphotransferase/kinase (NCBI) | compare |
| b1804 | rnd | +0.3 | 1.8 | ribonuclease D (NCBI) | compare |
| b3630 | rfaP | +0.3 | 2.7 | kinase that phosphorylates core heptose of lipopolysaccharide (NCBI) | compare |
| b1868 | yecE | +0.3 | 1.0 | hypothetical protein (NCBI) | compare |
| b1088 | yceD | +0.3 | 1.2 | hypothetical protein (NCBI) | compare |
| b2937 | speB | +0.3 | 2.1 | agmatinase (NCBI) | compare |
| b4435 | isrC | +0.3 | 1.0 | unknown RNA (NCBI) | compare |