Experiment set30S265 for Pseudomonas simiae WCS417

Compare to:

TSB 0.5x with 6-methoxy-2(3H)-benzoxazolone 2500 uM; timepoint 2

200 most important genes:

  gene name fitness t score description  
PS417_00045 -4.2 -1.4 glycerol acyltransferase compare
PS417_22450 -3.5 -2.0 ATP-dependent DNA helicase RuvA compare
PS417_00385 -3.0 -1.7 Fur family transcriptional regulator compare
PS417_07560 -2.7 -2.5 universal stress protein UspA compare
PS417_05975 -2.4 -1.1 chemotaxis protein CheW compare
PS417_03560 -2.4 -2.1 GTP-binding protein compare
PS417_00175 -2.3 -1.8 CigR compare
PS417_04365 -2.2 -1.4 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase compare
PS417_08125 -2.0 -0.6 prephenate dehydratase compare
PS417_01605 -1.9 -1.2 phosphoglycerate mutase compare
PS417_23915 -1.9 -2.9 pantoate--beta-alanine ligase compare
PS417_21480 -1.7 -1.5 23S rRNA pseudouridylate synthase compare
PS417_23370 -1.6 -5.7 protoheme IX farnesyltransferase compare
PS417_28070 -1.6 -8.2 phosphate ABC transporter ATP-binding protein compare
PS417_23375 -1.5 -2.1 cytochrome C oxidase compare
PS417_23380 -1.5 -2.7 cytochrome o ubiquinol oxidase subunit III compare
PS417_01920 -1.5 -0.6 ATP-dependent protease subunit HslV compare
PS417_27640 -1.4 -1.0 TetR family transcriptional regulator compare
PS417_06680 -1.4 -4.5 nuclease PIN compare
PS417_18310 -1.3 -0.7 hypothetical protein compare
PS417_23385 -1.2 -5.6 cytochrome o ubiquinol oxidase subunit I compare
PS417_02270 -1.2 -4.7 carbamoyltransferase compare
PS417_04180 -1.2 -2.2 GntR family transcriptional regulator compare
PS417_00180 -1.2 -1.6 tryptophan synthase subunit alpha compare
PS417_06245 -1.2 -1.2 zinc metallopeptidase RseP compare
PS417_23390 -1.2 -7.7 ubiquinol oxidase subunit II compare
PS417_08090 -1.2 -0.9 3-oxoacyl-ACP reductase compare
PS417_01145 -1.1 -1.1 taurine transporter ATP-binding subunit compare
PS417_26990 -1.1 -0.7 RNA pyrophosphohydrolase compare
PS417_24835 -1.1 -3.1 hypothetical protein compare
PS417_01850 -1.1 -2.3 phosphoribosyl-ATP pyrophosphatase (EC 3.6.1.31) (from data) compare
PS417_26730 -1.1 -0.6 pyrroline-5-carboxylate reductase compare
PS417_21625 -1.1 -1.2 DNA-binding protein compare
PS417_27290 -1.0 -1.6 hypothetical protein compare
PS417_27865 -1.0 -1.2 LysR family transcriptional regulator compare
PS417_27705 -1.0 -1.6 amino acid dehydrogenase compare
PS417_02555 -1.0 -5.6 exoribonuclease R compare
PS417_06600 -1.0 -1.0 leucine/isoleucine/valine transporter ATP-binding subunit compare
PS417_28080 -1.0 -6.6 phosphate ABC transporter permease compare
PS417_19065 -1.0 -1.2 monooxygenase compare
PS417_16555 -1.0 -1.3 cupin compare
PS417_23995 -1.0 -0.9 preprotein translocase subunit SecG compare
PS417_02485 -1.0 -1.6 tRNA delta(2)-isopentenylpyrophosphate transferase compare
PS417_27245 -1.0 -2.1 aminotransferase DegT compare
PS417_23770 -1.0 -1.1 exodeoxyribonuclease V subunit alpha compare
PS417_20715 -1.0 -1.2 cytochrome Cbb3 compare
PS417_11485 -0.9 -1.9 AraC family transcriptional regulator compare
PS417_27425 -0.9 -4.9 exopolyphosphatase compare
PS417_07140 -0.9 -1.2 peptidase M48 compare
PS417_01580 -0.9 -1.4 imidazole glycerol phosphate synthase compare
PS417_03260 -0.9 -0.8 5S ribosomal RNA compare
PS417_26850 -0.9 -0.9 twin-arginine translocation pathway signal protein compare
PS417_09235 -0.9 -1.0 molecular chaperone compare
PS417_04375 -0.9 -1.0 ABC transporter ATP-binding protein compare
PS417_23545 -0.9 -1.5 gamma-glutamyl kinase compare
PS417_01575 -0.9 -2.8 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (from data) compare
PS417_25270 -0.9 -1.5 NrdR family transcriptional regulator compare
PS417_16255 -0.9 -1.4 RNA polymerase sigma factor compare
PS417_13165 -0.9 -0.7 peroxidase compare
PS417_02255 -0.8 -1.3 lipopolysaccharide kinase compare
PS417_01570 -0.8 -2.0 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase compare
PS417_05830 -0.8 -2.0 hypothetical protein compare
PS417_25135 -0.8 -2.5 hypothetical protein compare
PS417_08025 -0.8 -1.4 acetylornithine aminotransferase compare
PS417_06355 -0.8 -2.6 protein-L-isoaspartate O-methyltransferase compare
PS417_11175 -0.8 -1.9 AraC family transcriptional regulator compare
PS417_21430 -0.8 -0.8 3-oxoacyl-ACP synthase compare
PS417_02885 -0.8 -1.1 hypothetical protein compare
PS417_01915 -0.8 -0.2 ATP-dependent protease ATP-binding subunit HslU compare
PS417_25825 -0.8 -2.4 sulfurtransferase compare
PS417_08365 -0.8 -0.9 hypothetical protein compare
PS417_10665 -0.8 -1.1 hypothetical protein compare
PS417_12660 -0.8 -1.0 hypothetical protein compare
PS417_19655 -0.8 -2.7 chemotaxis protein CheW compare
PS417_08135 -0.8 -1.7 3-phosphoshikimate 1-carboxyvinyltransferase compare
PS417_22690 -0.8 -1.9 phosphogluconate dehydratase compare
PS417_28230 -0.8 -1.7 transcriptional regulator compare
PS417_08540 -0.8 -1.5 RNA helicase compare
PS417_19650 -0.8 -3.5 chemotaxis protein CheW compare
PS417_07510 -0.7 -3.5 aspartyl beta-hydroxylase compare
PS417_08320 -0.7 -2.1 metal-chelation protein CHAD compare
PS417_10405 -0.7 -0.9 filamentous hemagglutinin compare
PS417_08420 -0.7 -2.7 lipoprotein compare
PS417_25030 -0.7 -2.4 hypothetical protein compare
PS417_04420 -0.7 -4.8 histidinol dehydrogenase compare
PS417_11360 -0.7 -2.1 energy transducer TonB compare
PS417_16105 -0.7 -1.7 LysR family transcriptional regulator compare
PS417_10220 -0.7 -2.1 hypothetical protein compare
PS417_15100 -0.7 -1.4 BatB protein compare
PS417_12570 -0.7 -3.2 AP endonuclease compare
PS417_10675 -0.7 -0.8 TetR family transcriptional regulator compare
PS417_02360 -0.7 -1.4 nitrate reductase compare
PS417_10720 -0.7 -2.0 chemotaxis protein CheY compare
PS417_10860 -0.7 -1.9 flagellar basal body rod protein FlgG compare
PS417_19660 -0.7 -4.8 cobalamin biosynthesis protein CobQ compare
PS417_26050 -0.7 -3.1 response regulator compare
PS417_04170 -0.7 -2.8 stringent starvation protein A compare
PS417_17470 -0.7 -1.7 LuxR family transcriptional regulator compare
PS417_16185 -0.7 -2.4 hypothetical protein compare
PS417_15285 -0.7 -0.9 type VI secretion protein compare
PS417_04990 -0.7 -2.0 GIY-YIG nuclease compare
PS417_15090 -0.7 -1.0 hypothetical protein compare
PS417_16455 -0.7 -3.0 hypothetical protein compare
PS417_01965 -0.7 -1.0 fimbriae biosynthesis protein compare
PS417_20705 -0.7 -1.1 cbb3-type cytochrome c oxidase subunit II compare
PS417_27940 -0.7 -0.9 type VI secretion protein compare
PS417_25145 -0.7 -1.1 hypothetical protein compare
PS417_23950 -0.7 -0.7 polynucleotide phosphorylase/polyadenylase compare
PS417_04415 -0.7 -3.4 ATP phosphoribosyltransferase (EC 2.4.2.17) (from data) compare
PS417_02880 -0.7 -0.3 copper chaperone compare
PS417_22580 -0.7 -1.9 membrane protein compare
PS417_21600 -0.6 -4.0 pilus assembly protein PilZ compare
PS417_17095 -0.6 -1.8 spore coat protein compare
PS417_24800 -0.6 -1.9 UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase compare
PS417_07440 -0.6 -2.2 cyclic nucleotide-binding protein compare
PS417_06530 -0.6 -0.9 membrane protein compare
PS417_03145 -0.6 -1.6 acetyl-CoA acetyltransferase compare
PS417_27295 -0.6 -2.4 hypothetical protein compare
PS417_17160 -0.6 -0.9 1-aminocyclopropane-1-carboxylate deaminase compare
PS417_09930 -0.6 -1.2 hypothetical protein compare
PS417_21830 -0.6 -1.7 TetR family transcriptional regulator compare
PS417_16720 -0.6 -0.8 membrane protein compare
PS417_23580 -0.6 -1.1 peptidylprolyl isomerase compare
PS417_28225 -0.6 -1.0 hypothetical protein compare
PS417_01200 -0.6 -2.9 phosphoesterase compare
PS417_02630 -0.6 -1.9 NAD synthetase compare
PS417_13805 -0.6 -3.9 4-amino-4-deoxy-L-arabinose transferase compare
PS417_07565 -0.6 -1.0 hypothetical protein compare
PS417_00185 -0.6 -1.2 tryptophan synthase subunit beta compare
PS417_06200 -0.6 -2.6 protein-PII uridylyltransferase compare
PS417_08435 -0.6 -1.0 pilus assembly protein PilZ compare
PS417_00390 -0.6 -2.7 ABC transporter substrate-binding protein compare
PS417_05160 -0.6 -0.8 DNA polymerase III subunit chi compare
PS417_05840 -0.6 -2.0 LuxR family transcriptional regulator compare
PS417_17440 -0.6 -1.2 beta-lactamase compare
PS417_14555 -0.6 -1.4 AsnC family transcriptional regulator compare
PS417_00375 -0.6 -2.0 membrane protein compare
PS417_14710 -0.6 -1.0 isochorismatase compare
PS417_07710 -0.6 -1.0 membrane protein compare
PS417_14655 -0.6 -0.7 lysine transporter LysE compare
PS417_06095 -0.6 -1.1 energy transducer TonB compare
PS417_08170 -0.6 -3.0 capsular biosynthesis protein compare
PS417_15390 -0.6 -1.3 hypothetical protein compare
PS417_00080 -0.6 -3.0 potassium transporter peripheral membrane component compare
PS417_17835 -0.6 -1.9 2-hydroxyhepta-2,4-diene-1,7-dioate isomerase compare
PS417_24675 -0.6 -1.4 lipoyl synthase compare
PS417_27870 -0.6 -1.0 ATP-dependent DNA helicase RecG compare
PS417_25710 -0.6 -0.8 indole-3-glycerol-phosphate synthase compare
PS417_00825 -0.6 -1.5 recombinase RecF compare
PS417_16950 -0.6 -1.8 fimbrial protein compare
PS417_21700 -0.6 -1.9 arginine N-succinyltransferase compare
PS417_09885 -0.6 -1.7 hypothetical protein compare
PS417_26280 -0.6 -1.2 NADPH:quinone reductase compare
PS417_23835 -0.6 -2.7 hypothetical protein compare
PS417_01310 -0.5 -1.4 ATPase compare
PS417_22205 -0.5 -2.8 potassium transporter TrkH compare
PS417_13820 -0.5 -2.3 UDP-glucose 6-dehydrogenase compare
PS417_22340 -0.5 -1.9 carbamate kinase compare
PS417_02370 -0.5 -1.2 ADP-ribose pyrophosphatase compare
PS417_16005 -0.5 -1.6 ATPase compare
PS417_17545 -0.5 -1.5 2-oxoisovalerate dehydrogenase compare
PS417_20620 -0.5 -2.0 glycosyl transferase family 2 compare
PS417_12915 -0.5 -1.3 DNA-binding protein compare
PS417_28515 -0.5 -0.9 16S rRNA methyltransferase compare
PS417_25915 -0.5 -1.7 carbon-nitrogen hydrolase compare
PS417_12520 -0.5 -1.0 hypothetical protein compare
PS417_05100 -0.5 -1.3 RNA polymerase sigma factor compare
PS417_21890 -0.5 -1.2 magnesium transporter CorA compare
PS417_22270 -0.5 -1.9 hypothetical protein compare
PS417_22595 -0.5 -2.8 hypothetical protein compare
PS417_20775 -0.5 -1.4 coproporphyrinogen III oxidase compare
PS417_12540 -0.5 -1.2 hypothetical protein compare
PS417_24225 -0.5 -1.1 hypothetical protein compare
PS417_02210 -0.5 -2.4 diguanylate cyclase compare
PS417_03365 -0.5 -2.5 transcriptional regulator compare
PS417_09140 -0.5 -1.3 biopolymer transporter ExbB compare
PS417_25295 -0.5 -1.8 hypothetical protein compare
PS417_26085 -0.5 -1.7 peptidase compare
PS417_27205 -0.5 -1.5 adenylate cyclase compare
PS417_07470 -0.5 -0.8 hypothetical protein compare
PS417_07275 -0.5 -1.3 5-carboxymethyl-2-hydroxymuconate isomerase compare
PS417_24240 -0.5 -1.6 membrane protein compare
PS417_24290 -0.5 -2.3 hypothetical protein compare
PS417_19955 -0.5 -1.0 hypothetical protein compare
PS417_05615 -0.5 -2.7 (2Fe-2S)-binding protein compare
PS417_27005 -0.5 -0.6 membrane protein compare
PS417_22300 -0.5 -0.9 LTXXQ domain protein compare
PS417_16680 -0.5 -0.8 MFS transporter compare
PS417_13245 -0.5 -1.6 saccharopine dehydrogenase compare
PS417_08990 -0.5 -2.4 ABC transporter substrate-binding protein compare
PS417_04835 -0.5 -0.8 hemolysin D compare
PS417_02115 -0.5 -2.2 acyltransferase compare
PS417_26160 -0.5 -2.1 hypothetical protein compare
PS417_14280 -0.5 -1.1 hypothetical protein compare
PS417_26120 -0.5 -1.1 hypothetical protein compare
PS417_22810 -0.5 -1.3 DNA base-flipping protein YbaZ compare
PS417_16560 -0.5 -1.0 GNAT family acetyltransferase compare
PS417_21870 -0.5 -0.7 glycerophosphodiester phosphodiesterase compare
PS417_03190 -0.5 -1.2 antibiotic biosynthesis monooxygenase compare
PS417_18270 -0.5 -1.9 alcohol dehydrogenase compare


Specific Phenotypes

None in this experiment

For Pseudomonas simiae WCS417 in stress experiments

For stress 6-methoxy-2(3H)-benzoxazolone across organisms