Experiment set30S264 for Pseudomonas simiae WCS417

Compare to:

TSB 0.5x with 6-methoxy-2(3H)-benzoxazolone 2500 uM; timepoint 2

200 most important genes:

  gene name fitness t score description  
PS417_28070 -3.6 -10.6 phosphate ABC transporter ATP-binding protein compare
PS417_22520 -3.3 -2.0 histidine kinase compare
PS417_22565 -3.1 -1.0 formyltetrahydrofolate deformylase compare
PS417_00045 -2.9 -1.3 glycerol acyltransferase compare
PS417_23380 -2.9 -4.7 cytochrome o ubiquinol oxidase subunit III compare
PS417_28080 -2.5 -9.1 phosphate ABC transporter permease compare
PS417_08125 -2.4 -0.8 prephenate dehydratase compare
PS417_23375 -2.4 -4.1 cytochrome C oxidase compare
PS417_23385 -2.3 -10.8 cytochrome o ubiquinol oxidase subunit I compare
PS417_01605 -2.2 -1.3 phosphoglycerate mutase compare
PS417_27795 -2.1 -0.6 orotate phosphoribosyltransferase compare
PS417_23370 -2.0 -7.4 protoheme IX farnesyltransferase compare
PS417_06530 -1.8 -2.1 membrane protein compare
PS417_23390 -1.7 -7.7 ubiquinol oxidase subunit II compare
PS417_23770 -1.7 -2.0 exodeoxyribonuclease V subunit alpha compare
PS417_18310 -1.7 -0.9 hypothetical protein compare
PS417_03560 -1.6 -1.6 GTP-binding protein compare
PS417_06680 -1.6 -6.0 nuclease PIN compare
PS417_01920 -1.6 -0.7 ATP-dependent protease subunit HslV compare
PS417_27245 -1.4 -3.5 aminotransferase DegT compare
PS417_27135 -1.4 -1.0 glutamine synthetase compare
PS417_20775 -1.3 -3.4 coproporphyrinogen III oxidase compare
PS417_02385 -1.2 -2.0 esterase compare
PS417_20715 -1.2 -1.6 cytochrome Cbb3 compare
PS417_00375 -1.2 -4.1 membrane protein compare
PS417_23950 -1.1 -1.3 polynucleotide phosphorylase/polyadenylase compare
PS417_28085 -1.1 -7.5 phosphate-binding protein compare
PS417_28075 -1.1 -2.6 phosphate ABC transporter permease compare
PS417_00385 -1.1 -1.3 Fur family transcriptional regulator compare
PS417_20785 -1.1 -1.2 transcriptional regulator compare
PS417_22450 -1.1 -0.9 ATP-dependent DNA helicase RuvA compare
PS417_02485 -1.1 -2.1 tRNA delta(2)-isopentenylpyrophosphate transferase compare
PS417_01855 -1.1 -2.9 phosphoribosyl-AMP cyclohydrolase compare
PS417_23915 -1.0 -3.2 pantoate--beta-alanine ligase compare
PS417_24745 -1.0 -2.2 gamma-glutamyl phosphate reductase compare
PS417_02555 -1.0 -6.8 exoribonuclease R compare
PS417_27425 -1.0 -4.3 exopolyphosphatase compare
PS417_10245 -1.0 -2.4 hypothetical protein compare
PS417_21430 -1.0 -1.0 3-oxoacyl-ACP synthase compare
PS417_07575 -1.0 -3.5 multifunctional fatty acid oxidation complex subunit alpha compare
PS417_05815 -1.0 -4.6 recombinase RecA compare
PS417_16555 -0.9 -1.5 cupin compare
PS417_13820 -0.9 -4.5 UDP-glucose 6-dehydrogenase compare
PS417_15805 -0.9 -2.4 transporter compare
PS417_11705 -0.9 -2.7 cyclic peptide transporter compare
PS417_01915 -0.9 -0.3 ATP-dependent protease ATP-binding subunit HslU compare
PS417_00180 -0.9 -1.4 tryptophan synthase subunit alpha compare
PS417_27295 -0.8 -3.6 hypothetical protein compare
PS417_23545 -0.8 -1.8 gamma-glutamyl kinase compare
PS417_07510 -0.8 -4.1 aspartyl beta-hydroxylase compare
PS417_23490 -0.8 -1.3 dihydrofolate reductase compare
PS417_14980 -0.8 -1.2 universal stress protein UspA compare
PS417_15800 -0.8 -4.3 photosynthetic protein synthase I compare
PS417_03260 -0.8 -0.5 5S ribosomal RNA compare
PS417_06245 -0.8 -0.8 zinc metallopeptidase RseP compare
PS417_15325 -0.8 -1.2 type VI secretion protein compare
PS417_01290 -0.7 -1.4 ADP-ribose diphosphatase compare
PS417_26990 -0.7 -0.4 RNA pyrophosphohydrolase compare
PS417_06685 -0.7 -0.9 beta-ketoadipyl CoA thiolase compare
PS417_09325 -0.7 -2.1 peptidase S41 compare
PS417_23995 -0.7 -0.9 preprotein translocase subunit SecG compare
PS417_13790 -0.7 -2.8 UDP phosphate 4-deoxy-4-formamido-L-arabinose transferase compare
PS417_01560 -0.7 -1.2 imidazoleglycerol-phosphate dehydratase compare
PS417_02880 -0.7 -0.3 copper chaperone compare
PS417_25975 -0.7 -3.6 Acyl-CoA dehydrogenase (EC 1.3.8.7) (from data) compare
PS417_11925 -0.7 -1.9 hypothetical protein compare
PS417_06200 -0.7 -3.1 protein-PII uridylyltransferase compare
PS417_12695 -0.7 -3.7 mannitol dehydrogenase compare
PS417_03100 -0.7 -1.1 pilus assembly protein compare
PS417_13120 -0.7 -4.6 aspartyl beta-hydroxylase compare
PS417_22620 -0.7 -2.0 pyruvate kinase compare
PS417_24835 -0.6 -4.2 hypothetical protein compare
PS417_26850 -0.6 -0.9 twin-arginine translocation pathway signal protein compare
PS417_07140 -0.6 -1.2 peptidase M48 compare
PS417_02225 -0.6 -1.1 bifunctional glutamine-synthetase adenylyltransferase/deadenyltransferase compare
PS417_04420 -0.6 -4.3 histidinol dehydrogenase compare
PS417_26805 -0.6 -0.9 cell division protein FtsE compare
PS417_14065 -0.6 -3.9 UTP--glucose-1-phosphate uridylyltransferase compare
PS417_02035 -0.6 -2.5 3-ketoacyl-ACP reductase compare
PS417_05025 -0.6 -1.5 maleylacetoacetate isomerase compare
PS417_01030 -0.6 -0.9 glutamine ABC transporter substrate-binding protein compare
PS417_25765 -0.6 -1.2 transcriptional regulator compare
PS417_17000 -0.6 -1.7 MerR family transcriptional regulator compare
PS417_09150 -0.6 -1.3 energy transducer TonB compare
PS417_27710 -0.6 -3.2 AsnC family transcriptional regulator compare
PS417_04290 -0.6 -2.0 hypothetical protein compare
PS417_01850 -0.6 -1.5 phosphoribosyl-ATP pyrophosphatase (EC 3.6.1.31) (from data) compare
PS417_01575 -0.6 -3.2 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (from data) compare
PS417_21630 -0.6 -1.2 magnesium transporter compare
PS417_16845 -0.5 -1.9 monovalent cation/H+ antiporter subunit E compare
PS417_02365 -0.5 -2.4 hypothetical protein compare
PS417_01580 -0.5 -1.2 imidazole glycerol phosphate synthase compare
PS417_05475 -0.5 -2.3 arginase compare
PS417_27595 -0.5 -1.7 recombinase XerC compare
PS417_11930 -0.5 -3.6 hypothetical protein compare
PS417_22205 -0.5 -2.4 potassium transporter TrkH compare
PS417_13620 -0.5 -1.3 thermostable hemolysin compare
PS417_08135 -0.5 -1.5 3-phosphoshikimate 1-carboxyvinyltransferase compare
PS417_14805 -0.5 -1.3 AraC family transcriptional regulator compare
PS417_03785 -0.5 -1.5 pilus assembly protein PilV compare
PS417_06845 -0.5 -1.2 lipoprotein compare
PS417_22990 -0.5 -0.9 iron dicitrate transport regulator FecR compare
PS417_15560 -0.5 -1.9 hypothetical protein compare
PS417_23215 -0.5 -2.6 RNA methyltransferase compare
PS417_19275 -0.5 -0.9 hypothetical protein compare
PS417_21015 -0.5 -1.9 EstX protein compare
PS417_00380 -0.5 -2.4 zinc ABC transporter ATP-binding protein compare
PS417_18905 -0.5 -1.7 acyl-CoA dehydrogenase compare
PS417_02415 -0.5 -2.8 phosphoserine phosphatase compare
PS417_17925 -0.5 -1.6 acyl-CoA dehydrogenase compare
PS417_23150 -0.5 -1.6 Cro/Cl family transcriptional regulator compare
PS417_13805 -0.5 -3.5 4-amino-4-deoxy-L-arabinose transferase compare
PS417_21480 -0.5 -0.7 23S rRNA pseudouridylate synthase compare
PS417_02560 -0.5 -1.2 23S rRNA methyltransferase compare
PS417_20725 -0.5 -1.3 cbb3-type cytochrome c oxidase subunit II compare
PS417_26995 -0.5 -3.0 phosphoserine phosphatase compare
PS417_03625 -0.5 -2.6 lipid A 3-O-deacylase compare
PS417_08540 -0.5 -1.3 RNA helicase compare
PS417_04270 -0.5 -3.4 ribonuclease G compare
PS417_23160 -0.5 -1.5 50S rRNA methyltransferase compare
PS417_00080 -0.5 -3.3 potassium transporter peripheral membrane component compare
PS417_05695 -0.5 -2.6 transcriptional regulator compare
PS417_01875 -0.5 -0.8 polyhydroxyalkanoic acid system protein compare
PS417_23900 -0.5 -2.8 poly(A) polymerase compare
PS417_22350 -0.5 -1.5 Fis family transcriptional regulator compare
PS417_24840 -0.5 -1.4 hypothetical protein compare
PS417_04310 -0.5 -2.2 hypothetical protein compare
PS417_12400 -0.5 -2.1 oxidoreductase compare
PS417_24115 -0.5 -1.4 hypothetical protein compare
PS417_28220 -0.5 -1.2 LysR family transcriptional regulator compare
PS417_27815 -0.5 -1.0 hypothetical protein compare
PS417_11180 -0.4 -1.7 TetR family transcriptional regulator compare
PS417_27875 -0.4 -2.8 histidine kinase compare
PS417_16390 -0.4 -3.0 peroxiredoxin compare
PS417_26420 -0.4 -0.9 hypothetical protein compare
PS417_05570 -0.4 -2.5 DeoR faimly transcriptional regulator compare
PS417_15540 -0.4 -0.9 NUDIX hydrolase compare
PS417_08380 -0.4 -3.3 ABC transporter ATP-binding protein compare
PS417_19955 -0.4 -1.0 hypothetical protein compare
PS417_08580 -0.4 -3.0 histidine kinase compare
PS417_19660 -0.4 -2.8 cobalamin biosynthesis protein CobQ compare
PS417_07470 -0.4 -0.7 hypothetical protein compare
PS417_03895 -0.4 -2.5 methyltransferase compare
PS417_27785 -0.4 -2.6 phosphoglucomutase compare
PS417_11340 -0.4 -1.9 prevent-host-death protein compare
PS417_12585 -0.4 -3.3 acriflavine resistance protein B compare
PS417_02725 -0.4 -1.4 hypothetical protein compare
PS417_05840 -0.4 -1.7 LuxR family transcriptional regulator compare
PS417_23475 -0.4 -0.9 hypothetical protein compare
PS417_00065 -0.4 -0.9 3-methyladenine DNA glycosylase compare
PS417_13795 -0.4 -2.4 UDP-4-amino-4-deoxy-L-arabinose formyltransferase compare
PS417_03380 -0.4 -0.7 hypothetical protein compare
PS417_26605 -0.4 -0.8 malonate decarboxylase subunit beta compare
PS417_27195 -0.4 -0.5 N-acetylglutamate synthase compare
PS417_23105 -0.4 -1.1 hypothetical protein compare
PS417_18355 -0.4 -2.8 DNA-binding protein compare
PS417_27075 -0.4 -0.9 thiol-disulfide isomerase compare
PS417_13900 -0.4 -2.6 chemotaxis protein CheR compare
PS417_13800 -0.4 -1.7 4-deoxy-4-formamido-L-arabinose-phospho-UDP deformylase compare
PS417_04340 -0.4 -2.0 ribosome hibernation promoting factor HPF compare
PS417_21670 -0.4 -1.9 6,7-dimethyl-8-ribityllumazine synthase compare
PS417_01565 -0.4 -1.5 imidazole glycerol phosphate synthase compare
PS417_19305 -0.4 -1.7 acireductone dioxygenase compare
PS417_18630 -0.4 -1.8 tRNA-dihydrouridine synthase C compare
PS417_00390 -0.4 -1.7 ABC transporter substrate-binding protein compare
PS417_14140 -0.4 -1.2 membrane protein compare
PS417_01435 -0.4 -0.8 hypothetical protein compare
PS417_28230 -0.4 -1.4 transcriptional regulator compare
PS417_19450 -0.4 -2.3 Patatin compare
PS417_22780 -0.4 -2.4 XRE family transcriptional regulator compare
PS417_12755 -0.4 -1.3 RND transporter compare
PS417_22575 -0.4 -2.7 exonuclease I compare
PS417_27940 -0.4 -0.6 type VI secretion protein compare
PS417_04965 -0.4 -0.8 hypothetical protein compare
PS417_11280 -0.4 -2.2 HxcX atypical pseudopilin compare
PS417_07895 -0.4 -2.1 hypothetical protein compare
PS417_20515 -0.4 -1.6 FMN-dependent NADH-azoreductase compare
PS417_06330 -0.4 -1.6 S-(hydroxymethyl)glutathione dehydrogenase compare
PS417_18485 -0.4 -2.4 membrane protein compare
PS417_08410 -0.4 -1.0 hypothetical protein compare
PS417_23505 -0.4 -1.1 cell division protein DedD compare
PS417_13580 -0.4 -1.0 AraC family transcriptional regulator compare
PS417_27070 -0.4 -2.4 alpha/beta hydrolase compare
PS417_15705 -0.4 -0.7 nitrate reductase compare
PS417_28145 -0.4 -1.5 AraC family transcriptional regulator compare
PS417_25915 -0.4 -1.5 carbon-nitrogen hydrolase compare
PS417_14540 -0.4 -0.9 cytochrome C oxidase subunit III compare
PS417_15390 -0.4 -1.7 hypothetical protein compare
PS417_20795 -0.4 -1.5 acyl-CoA dehydrogenase compare
PS417_12005 -0.4 -1.8 hypothetical protein compare
PS417_22765 -0.4 -2.0 InaA protein compare
PS417_26115 -0.4 -1.9 glutamine ABC transporter ATP-binding protein compare
PS417_23250 -0.4 -1.8 S-adenosylmethionine tRNA ribosyltransferase compare
PS417_27290 -0.4 -1.0 hypothetical protein compare
PS417_22615 -0.4 -1.8 hypothetical protein compare
PS417_10665 -0.4 -0.8 hypothetical protein compare
PS417_07410 -0.4 -1.7 hypothetical protein compare
PS417_27640 -0.4 -0.4 TetR family transcriptional regulator compare
PS417_18420 -0.4 -2.4 deoxyribonuclease compare
PS417_01360 -0.4 -1.9 4-oxalocrotonate tautomerase compare


Specific Phenotypes

None in this experiment

For Pseudomonas simiae WCS417 in stress experiments

For stress 6-methoxy-2(3H)-benzoxazolone across organisms