Experiment set30S262 for Pseudomonas simiae WCS417

Compare to:

TSB 0.5x with 6-methoxy-2(3H)-benzoxazolone 1250 uM; timepoint 2

200 most important genes:

  gene name fitness t score description  
PS417_22520 -2.6 -2.1 histidine kinase compare
PS417_23770 -2.3 -1.8 exodeoxyribonuclease V subunit alpha compare
PS417_28070 -2.1 -8.5 phosphate ABC transporter ATP-binding protein compare
PS417_27795 -2.1 -0.6 orotate phosphoribosyltransferase compare
PS417_23370 -1.9 -6.6 protoheme IX farnesyltransferase compare
PS417_18310 -1.8 -0.9 hypothetical protein compare
PS417_23380 -1.7 -3.9 cytochrome o ubiquinol oxidase subunit III compare
PS417_23375 -1.7 -2.5 cytochrome C oxidase compare
PS417_23390 -1.6 -8.2 ubiquinol oxidase subunit II compare
PS417_23385 -1.5 -7.4 cytochrome o ubiquinol oxidase subunit I compare
PS417_28080 -1.5 -9.7 phosphate ABC transporter permease compare
PS417_21630 -1.4 -2.4 magnesium transporter compare
PS417_23950 -1.3 -1.4 polynucleotide phosphorylase/polyadenylase compare
PS417_06680 -1.2 -4.6 nuclease PIN compare
PS417_00385 -1.2 -1.4 Fur family transcriptional regulator compare
PS417_02555 -1.2 -7.2 exoribonuclease R compare
PS417_02485 -1.1 -2.1 tRNA delta(2)-isopentenylpyrophosphate transferase compare
PS417_21625 -1.0 -1.5 DNA-binding protein compare
PS417_27245 -1.0 -2.0 aminotransferase DegT compare
PS417_14065 -1.0 -6.4 UTP--glucose-1-phosphate uridylyltransferase compare
PS417_08135 -1.0 -2.7 3-phosphoshikimate 1-carboxyvinyltransferase compare
PS417_22815 -1.0 -4.6 permease compare
PS417_08125 -1.0 -0.4 prephenate dehydratase compare
PS417_13820 -0.9 -4.4 UDP-glucose 6-dehydrogenase compare
PS417_22570 -0.9 -0.5 H-NS histone compare
PS417_01915 -0.9 -0.3 ATP-dependent protease ATP-binding subunit HslU compare
PS417_12855 -0.9 -3.0 3-phosphoshikimate 1-carboxyvinyltransferase compare
PS417_28075 -0.9 -3.7 phosphate ABC transporter permease compare
PS417_16555 -0.9 -1.5 cupin compare
PS417_08540 -0.9 -2.2 RNA helicase compare
PS417_20715 -0.9 -1.5 cytochrome Cbb3 compare
PS417_01575 -0.9 -3.5 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (from data) compare
PS417_15975 -0.9 -2.2 glutamate carboxypeptidase compare
PS417_13795 -0.8 -5.9 UDP-4-amino-4-deoxy-L-arabinose formyltransferase compare
PS417_12695 -0.8 -3.9 mannitol dehydrogenase compare
PS417_01580 -0.8 -1.6 imidazole glycerol phosphate synthase compare
PS417_04420 -0.8 -5.7 histidinol dehydrogenase compare
PS417_13805 -0.8 -4.8 4-amino-4-deoxy-L-arabinose transferase compare
PS417_06375 -0.8 -0.4 deoxycytidine triphosphate deaminase compare
PS417_00705 -0.8 -1.5 MarR family transcriptional regulator compare
PS417_00370 -0.8 -1.0 hypothetical protein compare
PS417_00045 -0.8 -0.6 glycerol acyltransferase compare
PS417_23160 -0.8 -2.0 50S rRNA methyltransferase compare
PS417_23995 -0.7 -1.0 preprotein translocase subunit SecG compare
PS417_10810 -0.7 -1.4 hypothetical protein compare
PS417_13790 -0.7 -2.3 UDP phosphate 4-deoxy-4-formamido-L-arabinose transferase compare
PS417_05475 -0.7 -3.5 arginase compare
PS417_04270 -0.7 -4.7 ribonuclease G compare
PS417_06200 -0.7 -3.3 protein-PII uridylyltransferase compare
PS417_15805 -0.7 -2.0 transporter compare
PS417_05695 -0.7 -3.9 transcriptional regulator compare
PS417_28085 -0.7 -5.4 phosphate-binding protein compare
PS417_01850 -0.7 -2.7 phosphoribosyl-ATP pyrophosphatase (EC 3.6.1.31) (from data) compare
PS417_26900 -0.7 -1.4 L-cystine transporter tcyP compare
PS417_27490 -0.7 -2.1 hypothetical protein compare
PS417_28220 -0.7 -2.0 LysR family transcriptional regulator compare
PS417_00375 -0.7 -2.7 membrane protein compare
PS417_01855 -0.7 -1.8 phosphoribosyl-AMP cyclohydrolase compare
PS417_15800 -0.7 -3.8 photosynthetic protein synthase I compare
PS417_01290 -0.6 -0.9 ADP-ribose diphosphatase compare
PS417_22690 -0.6 -1.2 phosphogluconate dehydratase compare
PS417_19805 -0.6 -2.0 flagellar M-ring protein FliF compare
PS417_11485 -0.6 -1.1 AraC family transcriptional regulator compare
PS417_26990 -0.6 -0.5 RNA pyrophosphohydrolase compare
PS417_04390 -0.6 -1.0 toluene tolerance protein compare
PS417_06280 -0.6 -2.0 ribonuclease HII compare
PS417_27945 -0.6 -0.8 type VI secretion protein ImpA compare
PS417_25650 -0.6 -1.4 anhydro-N-acetylmuramic acid kinase compare
PS417_06530 -0.6 -1.3 membrane protein compare
PS417_13165 -0.6 -1.2 peroxidase compare
PS417_27705 -0.6 -1.3 amino acid dehydrogenase compare
PS417_12520 -0.6 -1.7 hypothetical protein compare
PS417_04385 -0.6 -0.9 organic solvent ABC transporter substrate-binding protein compare
PS417_23900 -0.6 -3.3 poly(A) polymerase compare
PS417_02160 -0.6 -1.0 hypothetical protein compare
PS417_24800 -0.6 -3.1 UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase compare
PS417_17630 -0.6 -1.9 RNA polymerase sigma factor compare
PS417_26835 -0.6 -2.4 3-mercaptopyruvate sulfurtransferase compare
PS417_27425 -0.6 -3.0 exopolyphosphatase compare
PS417_02805 -0.5 -1.3 urease subunit gamma compare
PS417_04705 -0.5 -1.2 hypothetical protein compare
PS417_19360 -0.5 -2.4 hypothetical protein compare
PS417_07710 -0.5 -1.1 membrane protein compare
PS417_09325 -0.5 -1.8 peptidase S41 compare
PS417_08155 -0.5 -0.7 integration host factor subunit beta compare
PS417_18070 -0.5 -1.0 general secretion pathway protein GspH compare
PS417_07540 -0.5 -1.6 multifunctional fatty acid oxidation complex subunit alpha compare
PS417_01955 -0.5 -3.3 peptidase compare
PS417_25135 -0.5 -2.2 hypothetical protein compare
PS417_20775 -0.5 -1.6 coproporphyrinogen III oxidase compare
PS417_00180 -0.5 -1.1 tryptophan synthase subunit alpha compare
PS417_22825 -0.5 -2.5 hypothetical protein compare
PS417_03300 -0.5 -1.2 alanine acetyltransferase compare
PS417_05140 -0.5 -1.5 dipicolinate synthase compare
PS417_19755 -0.5 -1.3 flagellar motor switch protein FliM compare
PS417_18800 -0.5 -1.5 hypothetical protein compare
PS417_19650 -0.5 -2.1 chemotaxis protein CheW compare
PS417_14980 -0.5 -0.8 universal stress protein UspA compare
PS417_18440 -0.5 -1.8 hypothetical protein compare
PS417_08990 -0.5 -2.1 ABC transporter substrate-binding protein compare
PS417_07140 -0.5 -1.4 peptidase M48 compare
PS417_12915 -0.5 -1.9 DNA-binding protein compare
PS417_28265 -0.5 -1.0 pyridoxamine kinase compare
PS417_13755 -0.5 -1.9 oxidoreductase compare
PS417_24835 -0.5 -2.6 hypothetical protein compare
PS417_23915 -0.5 -1.5 pantoate--beta-alanine ligase compare
PS417_01195 -0.5 -1.6 RNA-binding protein S4 compare
PS417_21270 -0.5 -1.3 translation initiation factor 2 compare
PS417_18420 -0.5 -2.0 deoxyribonuclease compare
PS417_04760 -0.5 -2.1 hypothetical protein compare
PS417_19190 -0.5 -1.6 BolA family transcriptional regulator compare
PS417_13425 -0.5 -1.5 cupin compare
PS417_19425 -0.5 -0.7 allantoicase compare
PS417_05165 -0.5 -1.5 cytosol aminopeptidase compare
PS417_04290 -0.5 -1.4 hypothetical protein compare
PS417_05830 -0.5 -1.2 hypothetical protein compare
PS417_05500 -0.5 -1.1 2,3-diketo-5-methylthio-1-phosphopentane phosphatase compare
PS417_25730 -0.5 -3.1 phosphoglycolate phosphatase compare
PS417_19275 -0.5 -0.8 hypothetical protein compare
PS417_28140 -0.5 -2.7 asparaginase compare
PS417_25975 -0.5 -2.3 Acyl-CoA dehydrogenase (EC 1.3.8.7) (from data) compare
PS417_19450 -0.5 -3.0 Patatin compare
PS417_08930 -0.5 -1.7 hypothetical protein compare
PS417_15710 -0.4 -0.7 nitrate reductase compare
PS417_26530 -0.4 -0.7 hypothetical protein compare
PS417_26120 -0.4 -0.9 hypothetical protein compare
PS417_09300 -0.4 -1.6 peptidylprolyl isomerase compare
PS417_04180 -0.4 -1.3 GntR family transcriptional regulator compare
PS417_10390 -0.4 -1.7 RNA polymerase subunit sigma24 compare
PS417_07575 -0.4 -2.5 multifunctional fatty acid oxidation complex subunit alpha compare
PS417_24185 -0.4 -2.0 hypothetical protein compare
PS417_11790 -0.4 -2.8 ABC transporter substrate-binding protein compare
PS417_06825 -0.4 -1.8 hypothetical protein compare
PS417_02475 -0.4 -1.3 N-acetylmuramoyl-L-alanine amidase compare
PS417_14275 -0.4 -2.1 hypothetical protein compare
PS417_19800 -0.4 -1.7 flagellar motor switch protein FliG compare
PS417_12585 -0.4 -2.7 acriflavine resistance protein B compare
PS417_27295 -0.4 -2.4 hypothetical protein compare
PS417_00185 -0.4 -0.8 tryptophan synthase subunit beta compare
PS417_07510 -0.4 -1.7 aspartyl beta-hydroxylase compare
PS417_16400 -0.4 -1.4 NAD(P)H-quinone oxidoreductase compare
PS417_21680 -0.4 -2.5 succinylglutamate desuccinylase compare
PS417_10330 -0.4 -1.8 histidine kinase compare
PS417_13990 -0.4 -1.3 LysR family transcriptional regulator compare
PS417_12870 -0.4 -0.8 enoyl-CoA hydratase compare
PS417_17105 -0.4 -1.5 spore coat protein compare
PS417_27195 -0.4 -0.6 N-acetylglutamate synthase compare
PS417_23250 -0.4 -2.1 S-adenosylmethionine tRNA ribosyltransferase compare
PS417_03785 -0.4 -0.8 pilus assembly protein PilV compare
PS417_21430 -0.4 -0.7 3-oxoacyl-ACP synthase compare
PS417_12245 -0.4 -1.7 GNAT family acetyltransferase compare
PS417_09235 -0.4 -0.7 molecular chaperone compare
PS417_19195 -0.4 -1.7 hypothetical protein compare
PS417_18450 -0.4 -1.6 hydrolase compare
PS417_22620 -0.4 -1.0 pyruvate kinase compare
PS417_23505 -0.4 -1.0 cell division protein DedD compare
PS417_16390 -0.4 -2.8 peroxiredoxin compare
PS417_14940 -0.4 -1.0 LysR family transcriptional regulator compare
PS417_12335 -0.4 -2.2 cobalt transporter compare
PS417_06770 -0.4 -1.6 multidrug transporter compare
PS417_20855 -0.4 -0.5 hypothetical protein compare
PS417_28230 -0.4 -1.4 transcriptional regulator compare
PS417_02115 -0.4 -1.7 acyltransferase compare
PS417_04585 -0.4 -0.4 hypothetical protein compare
PS417_03100 -0.4 -0.8 pilus assembly protein compare
PS417_08745 -0.4 -1.8 hypothetical protein compare
PS417_14295 -0.4 -1.2 AraC family transcriptional regulator compare
PS417_22205 -0.4 -2.4 potassium transporter TrkH compare
PS417_16875 -0.4 -2.1 signal peptidase compare
PS417_05210 -0.4 -1.8 copper oxidase compare
PS417_17000 -0.4 -1.4 MerR family transcriptional regulator compare
PS417_07400 -0.4 -1.1 hypothetical protein compare
PS417_08670 -0.4 -1.9 molybdopterin biosynthesis protein B compare
PS417_20725 -0.4 -1.0 cbb3-type cytochrome c oxidase subunit II compare
PS417_13140 -0.4 -1.1 oxidoreductase compare
PS417_25635 -0.4 -2.0 biotin--protein ligase compare
PS417_26220 -0.4 -1.4 Rieske (2Fe-2S) protein compare
PS417_07270 -0.4 -1.9 LysR family transcriptional regulator compare
PS417_00445 -0.4 -2.2 histidine kinase compare
PS417_27875 -0.4 -2.5 histidine kinase compare
PS417_22575 -0.4 -2.4 exonuclease I compare
PS417_26725 -0.4 -1.5 hypothetical protein compare
PS417_17645 -0.4 -0.8 RND transporter compare
PS417_19675 -0.4 -1.6 chemotaxis protein CheY compare
PS417_03935 -0.4 -1.1 N-acetyl-anhydromuranmyl-L-alanine amidase compare
PS417_09305 -0.4 -1.9 hypothetical protein compare
PS417_27070 -0.4 -2.8 alpha/beta hydrolase compare
PS417_02045 -0.4 -1.5 3-oxoacyl-ACP synthase compare
PS417_20520 -0.4 -1.4 3-phosphoglycerate kinase compare
PS417_00175 -0.4 -0.6 CigR compare
PS417_11705 -0.4 -1.2 cyclic peptide transporter compare
PS417_05510 -0.4 -1.8 alpha/beta hydrolase compare
PS417_20160 -0.4 -1.6 cysteine synthase compare
PS417_14050 -0.4 -1.6 recombinase compare
PS417_15675 -0.4 -2.0 chemotaxis protein compare
PS417_07455 -0.4 -1.1 glutamine amidotransferase compare
PS417_09705 -0.4 -1.8 hypothetical protein compare
PS417_27290 -0.4 -1.0 hypothetical protein compare
PS417_20705 -0.4 -0.9 cbb3-type cytochrome c oxidase subunit II compare
PS417_03630 -0.3 -1.8 hypothetical protein compare


Specific Phenotypes

None in this experiment

For Pseudomonas simiae WCS417 in stress experiments

For stress 6-methoxy-2(3H)-benzoxazolone across organisms