Experiment set30S259 for Pseudomonas simiae WCS417

Compare to:

TSB 0.5x with Dimethyl Sulfoxide 0.5 vol%; timepoint 2

200 most important genes:

  gene name fitness t score description  
PS417_22565 -3.2 -1.0 formyltetrahydrofolate deformylase compare
PS417_03260 -2.9 -1.2 5S ribosomal RNA compare
PS417_21430 -2.6 -3.0 3-oxoacyl-ACP synthase compare
PS417_27795 -2.0 -0.6 orotate phosphoribosyltransferase compare
PS417_18310 -1.8 -1.0 hypothetical protein compare
PS417_06680 -1.7 -6.2 nuclease PIN compare
PS417_20715 -1.7 -2.3 cytochrome Cbb3 compare
PS417_08540 -1.7 -3.5 RNA helicase compare
PS417_26990 -1.5 -1.0 RNA pyrophosphohydrolase compare
PS417_23380 -1.4 -3.6 cytochrome o ubiquinol oxidase subunit III compare
PS417_02555 -1.3 -8.5 exoribonuclease R compare
PS417_02485 -1.3 -2.3 tRNA delta(2)-isopentenylpyrophosphate transferase compare
PS417_16555 -1.3 -1.4 cupin compare
PS417_27075 -1.2 -2.0 thiol-disulfide isomerase compare
PS417_08025 -1.2 -2.3 acetylornithine aminotransferase compare
PS417_02560 -1.2 -2.1 23S rRNA methyltransferase compare
PS417_23950 -1.1 -1.3 polynucleotide phosphorylase/polyadenylase compare
PS417_23915 -1.0 -2.2 pantoate--beta-alanine ligase compare
PS417_23390 -1.0 -6.2 ubiquinol oxidase subunit II compare
PS417_23375 -1.0 -2.4 cytochrome C oxidase compare
PS417_24615 -1.0 -1.0 hypothetical protein compare
PS417_23385 -1.0 -6.8 cytochrome o ubiquinol oxidase subunit I compare
PS417_23370 -1.0 -4.5 protoheme IX farnesyltransferase compare
PS417_19955 -1.0 -2.0 hypothetical protein compare
PS417_24500 -1.0 -2.8 DEAD/DEAH box helicase compare
PS417_21845 -0.9 -1.4 membrane protein compare
PS417_01605 -0.9 -0.9 phosphoglycerate mutase compare
PS417_01915 -0.8 -0.2 ATP-dependent protease ATP-binding subunit HslU compare
PS417_20855 -0.8 -1.0 hypothetical protein compare
PS417_25765 -0.8 -2.2 transcriptional regulator compare
PS417_06770 -0.8 -2.7 multidrug transporter compare
PS417_04365 -0.8 -1.0 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase compare
PS417_13165 -0.8 -2.3 peroxidase compare
PS417_00755 -0.8 -0.7 biofilm PGA synthesis protein PgaD compare
PS417_04375 -0.8 -1.1 ABC transporter ATP-binding protein compare
PS417_05695 -0.7 -3.7 transcriptional regulator compare
PS417_23770 -0.7 -1.0 exodeoxyribonuclease V subunit alpha compare
PS417_27245 -0.7 -1.8 aminotransferase DegT compare
PS417_02370 -0.7 -1.2 ADP-ribose pyrophosphatase compare
PS417_07565 -0.7 -1.3 hypothetical protein compare
PS417_15805 -0.7 -2.1 transporter compare
PS417_03380 -0.7 -1.4 hypothetical protein compare
PS417_19645 -0.7 -3.1 chemotaxis protein compare
PS417_02255 -0.7 -1.6 lipopolysaccharide kinase compare
PS417_03000 -0.7 -2.9 translation initiation factor Sui1 compare
PS417_23160 -0.7 -1.4 50S rRNA methyltransferase compare
PS417_02880 -0.7 -0.3 copper chaperone compare
PS417_16825 -0.7 -3.1 membrane protein compare
PS417_22520 -0.7 -1.0 histidine kinase compare
PS417_05500 -0.6 -1.3 2,3-diketo-5-methylthio-1-phosphopentane phosphatase compare
PS417_19065 -0.6 -1.1 monooxygenase compare
PS417_02280 -0.6 -0.7 GlcNAc-PI de-N-acetylase compare
PS417_15800 -0.6 -4.2 photosynthetic protein synthase I compare
PS417_23900 -0.6 -2.9 poly(A) polymerase compare
PS417_03560 -0.6 -0.7 GTP-binding protein compare
PS417_26370 -0.6 -2.2 RNA helicase compare
PS417_01855 -0.6 -0.8 phosphoribosyl-AMP cyclohydrolase compare
PS417_25815 -0.6 -2.2 magnesium transporter ApaG compare
PS417_02695 -0.6 -1.5 protein hupE compare
PS417_27295 -0.6 -1.9 hypothetical protein compare
PS417_06280 -0.6 -2.1 ribonuclease HII compare
PS417_00385 -0.6 -0.8 Fur family transcriptional regulator compare
PS417_19720 -0.6 -1.4 DNA-binding protein compare
PS417_24600 -0.6 -3.4 hydrogenase compare
PS417_00045 -0.6 -0.5 glycerol acyltransferase compare
PS417_05985 -0.6 -2.2 chemotaxis protein CheY compare
PS417_01850 -0.6 -2.5 phosphoribosyl-ATP pyrophosphatase (EC 3.6.1.31) (from data) compare
PS417_11585 -0.6 -1.2 LuxR family transcriptional regulator compare
PS417_04270 -0.6 -3.2 ribonuclease G compare
PS417_09235 -0.6 -1.0 molecular chaperone compare
PS417_04875 -0.6 -1.3 molybdenum cofactor biosynthesis protein MoaE compare
PS417_03935 -0.6 -1.9 N-acetyl-anhydromuranmyl-L-alanine amidase compare
PS417_28070 -0.6 -3.1 phosphate ABC transporter ATP-binding protein compare
PS417_19755 -0.6 -1.5 flagellar motor switch protein FliM compare
PS417_27640 -0.6 -0.6 TetR family transcriptional regulator compare
PS417_13755 -0.6 -2.1 oxidoreductase compare
PS417_08135 -0.5 -1.6 3-phosphoshikimate 1-carboxyvinyltransferase compare
PS417_09085 -0.5 -0.9 hypothetical protein compare
PS417_20775 -0.5 -1.2 coproporphyrinogen III oxidase compare
PS417_25825 -0.5 -2.8 sulfurtransferase compare
PS417_07140 -0.5 -1.5 peptidase M48 compare
PS417_25650 -0.5 -1.1 anhydro-N-acetylmuramic acid kinase compare
PS417_24455 -0.5 -2.0 membrane protein compare
PS417_04435 -0.5 -4.2 uracil phosphoribosyltransferase compare
PS417_27585 -0.5 -1.5 diaminopimelate epimerase compare
PS417_26260 -0.5 -1.3 hypothetical protein compare
PS417_17215 -0.5 -1.2 peptidylprolyl isomerase compare
PS417_27300 -0.5 -0.5 cell division protein ZapA compare
PS417_27705 -0.5 -1.2 amino acid dehydrogenase compare
PS417_24525 -0.5 -1.0 nuclease compare
PS417_00620 -0.5 -2.1 GntR family transcriptional regulator compare
PS417_17855 -0.5 -2.2 major facilitator transporter compare
PS417_19605 -0.5 -1.2 hypothetical protein compare
PS417_21055 -0.5 -2.5 threonyl-tRNA synthetase compare
PS417_15520 -0.5 -1.1 hypothetical protein compare
PS417_05635 -0.5 -3.3 membrane protein compare
PS417_15790 -0.5 -1.5 hypothetical protein compare
PS417_24180 -0.5 -4.4 hypothetical protein compare
PS417_11360 -0.5 -2.1 energy transducer TonB compare
PS417_27590 -0.5 -3.2 hypothetical protein compare
PS417_09470 -0.5 -0.9 hypothetical protein compare
PS417_22210 -0.5 -1.5 AraC family transcriptional regulator compare
PS417_07170 -0.5 -1.5 hypothetical protein compare
PS417_20700 -0.5 -2.8 cbb3-type cytochrome c oxidase subunit I compare
PS417_27425 -0.5 -2.7 exopolyphosphatase compare
PS417_22795 -0.5 -1.1 exclusion suppressor FxsA compare
PS417_06075 -0.5 -1.3 hypothetical protein compare
PS417_14235 -0.5 -1.2 hypothetical protein compare
PS417_02385 -0.5 -1.1 esterase compare
PS417_13545 -0.5 -1.7 arginine aminotransferase compare
PS417_11375 -0.5 -2.1 hypothetical protein compare
PS417_19835 -0.5 -0.8 flagellar biosynthesis protein FliS compare
PS417_01715 -0.5 -0.9 hypothetical protein compare
PS417_26605 -0.5 -0.9 malonate decarboxylase subunit beta compare
PS417_26775 -0.5 -2.2 thiazole synthase compare
PS417_14755 -0.5 -1.2 UV damage repair endonuclease UvdE compare
PS417_02975 -0.5 -1.7 3-dehydroquinate dehydratase compare
PS417_10245 -0.5 -1.2 hypothetical protein compare
PS417_18055 -0.5 -1.1 general secretion pathway protein GspK compare
PS417_06200 -0.5 -2.3 protein-PII uridylyltransferase compare
PS417_00845 -0.5 -1.1 transcriptional regulator compare
PS417_15335 -0.5 -1.8 hypothetical protein compare
PS417_11075 -0.5 -1.7 hydroxypyruvate isomerase compare
PS417_16165 -0.4 -1.9 ABC transporter substrate-binding protein compare
PS417_01955 -0.4 -2.6 peptidase compare
PS417_04035 -0.4 -2.7 hypothetical protein compare
PS417_03100 -0.4 -0.8 pilus assembly protein compare
PS417_06730 -0.4 -1.0 3-carboxy-cis,cis-muconate cycloisomerase compare
PS417_19490 -0.4 -1.6 mechanosensitive ion channel protein compare
PS417_18070 -0.4 -0.9 general secretion pathway protein GspH compare
PS417_13580 -0.4 -1.1 AraC family transcriptional regulator compare
PS417_06350 -0.4 -3.1 stationary phase survival protein SurE compare
PS417_01030 -0.4 -1.0 glutamine ABC transporter substrate-binding protein compare
PS417_22570 -0.4 -0.3 H-NS histone compare
PS417_23545 -0.4 -1.0 gamma-glutamyl kinase compare
PS417_03310 -0.4 -2.4 carbonate dehydratase compare
PS417_27810 -0.4 -3.1 ribonuclease PH compare
PS417_06010 -0.4 -2.4 TetR family transcriptional regulator compare
PS417_00085 -0.4 -1.5 16S rRNA methyltransferase compare
PS417_15120 -0.4 -2.6 chromosome segregation protein SMC compare
PS417_03550 -0.4 -1.5 hypothetical protein compare
PS417_09300 -0.4 -1.8 peptidylprolyl isomerase compare
PS417_21065 -0.4 -1.4 3-methylitaconate isomerase compare
PS417_27250 -0.4 -2.9 glycine cleavage system protein H compare
PS417_26730 -0.4 -0.3 pyrroline-5-carboxylate reductase compare
PS417_12755 -0.4 -1.6 RND transporter compare
PS417_18395 -0.4 -1.0 D-ribose ABC transporter, permease component RbsC (from data) compare
PS417_11485 -0.4 -1.4 AraC family transcriptional regulator compare
PS417_17495 -0.4 -1.7 multidrug ABC transporter permease compare
PS417_18460 -0.4 -1.0 transcriptional regulator compare
PS417_09625 -0.4 -1.0 sugar ABC transporter substrate-binding protein compare
PS417_19885 -0.4 -2.1 flagellar basal body rod protein FlgG compare
PS417_04865 -0.4 -1.1 molybdenum cofactor biosynthesis protein MoaC compare
PS417_24170 -0.4 -3.9 cell division protein FtsK compare
PS417_10445 -0.4 -1.0 LysR family transcriptional regulator compare
PS417_18490 -0.4 -1.5 hypothetical protein compare
PS417_17805 -0.4 -1.4 microcin B17 processing protein McbC compare
PS417_15875 -0.4 -0.9 LuxR family transcriptional regulator compare
PS417_06845 -0.4 -0.9 lipoprotein compare
PS417_22530 -0.4 -1.7 hypothetical protein compare
PS417_14540 -0.4 -1.0 cytochrome C oxidase subunit III compare
PS417_05575 -0.4 -3.1 Glycerol kinase (EC 2.7.1.30) (from data) compare
PS417_26220 -0.4 -1.4 Rieske (2Fe-2S) protein compare
PS417_16510 -0.4 -1.2 Clp protease ClpX compare
PS417_05900 -0.4 -1.8 TetR family transcriptional regulator compare
PS417_06685 -0.4 -0.6 beta-ketoadipyl CoA thiolase compare
PS417_08150 -0.4 -1.4 hypothetical protein compare
PS417_11540 -0.4 -2.0 NAD synthetase compare
PS417_08420 -0.4 -1.4 lipoprotein compare
PS417_13495 -0.4 -2.1 nuclease compare
PS417_08155 -0.4 -0.5 integration host factor subunit beta compare
PS417_06040 -0.4 -1.7 hypothetical protein compare
PS417_08580 -0.4 -2.0 histidine kinase compare
PS417_05735 -0.4 -1.2 tail fiber protein compare
PS417_02415 -0.4 -1.3 phosphoserine phosphatase compare
PS417_21285 -0.4 -2.2 hypothetical protein compare
PS417_19655 -0.4 -1.6 chemotaxis protein CheW compare
PS417_13645 -0.4 -1.2 ABC transporter compare
PS417_02270 -0.4 -1.9 carbamoyltransferase compare
PS417_12380 -0.4 -1.9 peptidase S54 compare
PS417_07305 -0.4 -1.2 3-beta hydroxysteroid dehydrogenase compare
PS417_07400 -0.4 -1.7 hypothetical protein compare
PS417_23530 -0.4 -2.2 1,2-oxophytodienoate reductase compare
PS417_10840 -0.4 -1.6 amidase compare
PS417_12585 -0.4 -2.4 acriflavine resistance protein B compare
PS417_14050 -0.4 -1.7 recombinase compare
PS417_11410 -0.4 -1.6 phospholipase compare
PS417_01440 -0.4 -2.2 hypothetical protein compare
PS417_24790 -0.4 -1.9 hypothetical protein compare
PS417_11080 -0.4 -1.6 dehydrogenase compare
PS417_01135 -0.4 -1.5 taurine dioxygenase compare
PS417_06525 -0.4 -2.6 beta-lactamase compare
PS417_07765 -0.4 -1.6 hypothetical protein compare
PS417_14915 -0.4 -1.3 host specificity protein compare
PS417_20825 -0.4 -1.1 drug:proton antiporter compare
PS417_05100 -0.4 -1.3 RNA polymerase sigma factor compare
PS417_05815 -0.4 -1.8 recombinase RecA compare
PS417_22825 -0.4 -2.1 hypothetical protein compare
PS417_20160 -0.4 -1.4 cysteine synthase compare
PS417_06500 -0.4 -0.9 hypothetical protein compare


Specific Phenotypes

None in this experiment

For Pseudomonas simiae WCS417 in no stress control experiments

For no stress control Dimethyl Sulfoxide across organisms