Experiment set30S257 for Pseudomonas simiae WCS417

Compare to:

TSB 0.5x with 6-methoxy-2(3H)-benzoxazolone 2500 uM; timepoint 1

200 most important genes:

  gene name fitness t score description  
PS417_23950 -4.5 -1.8 polynucleotide phosphorylase/polyadenylase compare
PS417_05975 -3.2 -1.1 chemotaxis protein CheW compare
PS417_01605 -2.5 -1.1 phosphoglycerate mutase compare
PS417_01560 -2.4 -3.3 imidazoleglycerol-phosphate dehydratase compare
PS417_27795 -2.4 -0.6 orotate phosphoribosyltransferase compare
PS417_23770 -1.9 -1.7 exodeoxyribonuclease V subunit alpha compare
PS417_23380 -1.9 -2.8 cytochrome o ubiquinol oxidase subunit III compare
PS417_08090 -1.8 -1.1 3-oxoacyl-ACP reductase compare
PS417_28070 -1.8 -6.5 phosphate ABC transporter ATP-binding protein compare
PS417_23385 -1.8 -8.7 cytochrome o ubiquinol oxidase subunit I compare
PS417_06685 -1.8 -1.2 beta-ketoadipyl CoA thiolase compare
PS417_23375 -1.8 -3.1 cytochrome C oxidase compare
PS417_07305 -1.5 -2.1 3-beta hydroxysteroid dehydrogenase compare
PS417_00045 -1.5 -0.8 glycerol acyltransferase compare
PS417_06680 -1.4 -5.0 nuclease PIN compare
PS417_18310 -1.4 -0.6 hypothetical protein compare
PS417_07140 -1.4 -2.1 peptidase M48 compare
PS417_23390 -1.4 -5.1 ubiquinol oxidase subunit II compare
PS417_23370 -1.3 -3.4 protoheme IX farnesyltransferase compare
PS417_23915 -1.3 -2.4 pantoate--beta-alanine ligase compare
PS417_24600 -1.3 -6.6 hydrogenase compare
PS417_00180 -1.3 -1.4 tryptophan synthase subunit alpha compare
PS417_28080 -1.3 -8.1 phosphate ABC transporter permease compare
PS417_03560 -1.3 -1.1 GTP-binding protein compare
PS417_22795 -1.2 -1.7 exclusion suppressor FxsA compare
PS417_19955 -1.1 -1.6 hypothetical protein compare
PS417_01575 -1.1 -3.4 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (from data) compare
PS417_03380 -1.1 -1.5 hypothetical protein compare
PS417_05100 -1.0 -1.9 RNA polymerase sigma factor compare
PS417_17070 -1.0 -1.9 RNA polymerase subunit sigma-24 compare
PS417_27245 -1.0 -2.3 aminotransferase DegT compare
PS417_02385 -1.0 -1.6 esterase compare
PS417_03260 -1.0 -0.8 5S ribosomal RNA compare
PS417_15915 -1.0 -1.1 hypothetical protein compare
PS417_00510 -1.0 -1.1 membrane protein compare
PS417_19275 -1.0 -1.1 hypothetical protein compare
PS417_20115 -0.9 -1.4 hypothetical protein compare
PS417_26850 -0.9 -1.0 twin-arginine translocation pathway signal protein compare
PS417_06075 -0.9 -1.6 hypothetical protein compare
PS417_02555 -0.9 -4.9 exoribonuclease R compare
PS417_27425 -0.9 -4.4 exopolyphosphatase compare
PS417_26900 -0.9 -1.1 L-cystine transporter tcyP compare
PS417_02225 -0.9 -1.3 bifunctional glutamine-synthetase adenylyltransferase/deadenyltransferase compare
PS417_17645 -0.9 -1.2 RND transporter compare
PS417_09325 -0.9 -2.3 peptidase S41 compare
PS417_13990 -0.9 -2.0 LysR family transcriptional regulator compare
PS417_06200 -0.9 -3.4 protein-PII uridylyltransferase compare
PS417_15390 -0.8 -2.3 hypothetical protein compare
PS417_22620 -0.8 -2.6 pyruvate kinase compare
PS417_26730 -0.8 -0.5 pyrroline-5-carboxylate reductase compare
PS417_08545 -0.8 -1.1 aromatic ring-opening dioxygenase LigB compare
PS417_00375 -0.8 -2.2 membrane protein compare
PS417_06770 -0.8 -2.4 multidrug transporter compare
PS417_26990 -0.8 -0.5 RNA pyrophosphohydrolase compare
PS417_27295 -0.8 -3.9 hypothetical protein compare
PS417_21070 -0.8 -2.2 aconitate hydratase compare
PS417_08320 -0.8 -1.1 metal-chelation protein CHAD compare
PS417_16105 -0.8 -2.3 LysR family transcriptional regulator compare
PS417_05010 -0.8 -1.8 IclR family transcriptional regulator compare
PS417_22990 -0.8 -1.2 iron dicitrate transport regulator FecR compare
PS417_13305 -0.8 -0.8 hypothetical protein compare
PS417_24615 -0.8 -0.7 hypothetical protein compare
PS417_02070 -0.8 -0.9 membrane protein compare
PS417_19305 -0.8 -2.2 acireductone dioxygenase compare
PS417_03350 -0.8 -2.1 cytochrome C peroxidase compare
PS417_28075 -0.8 -2.5 phosphate ABC transporter permease compare
PS417_02255 -0.8 -1.4 lipopolysaccharide kinase compare
PS417_16815 -0.7 -0.8 acyl-CoA dehydrogenase compare
PS417_26725 -0.7 -3.0 hypothetical protein compare
PS417_06245 -0.7 -0.8 zinc metallopeptidase RseP compare
PS417_26985 -0.7 -3.2 phosphoenolpyruvate-protein phosphotransferase compare
PS417_08135 -0.7 -1.9 3-phosphoshikimate 1-carboxyvinyltransferase compare
PS417_18690 -0.7 -2.5 aromatic amino acid aminotransferase compare
PS417_04420 -0.7 -4.7 histidinol dehydrogenase compare
PS417_23490 -0.7 -1.0 dihydrofolate reductase compare
PS417_19135 -0.7 -1.6 DeoR faimly transcriptional regulator compare
PS417_17680 -0.7 -2.0 ABC transporter compare
PS417_05535 -0.7 -1.1 Fis family transcriptional regulator compare
PS417_00550 -0.7 -0.9 hypothetical protein compare
PS417_22205 -0.7 -3.4 potassium transporter TrkH compare
PS417_09085 -0.7 -1.1 hypothetical protein compare
PS417_08410 -0.7 -0.9 hypothetical protein compare
PS417_05810 -0.7 -3.3 damage-inducible protein CinA compare
PS417_17805 -0.7 -1.7 microcin B17 processing protein McbC compare
PS417_17590 -0.7 -1.2 ABC transporter substrate-binding protein compare
PS417_15745 -0.7 -0.9 lipid carrier protein compare
PS417_15800 -0.7 -3.3 photosynthetic protein synthase I compare
PS417_12375 -0.7 -1.5 serine/threonine protein phosphatase compare
PS417_00825 -0.7 -1.7 recombinase RecF compare
PS417_27585 -0.7 -0.6 diaminopimelate epimerase compare
PS417_06375 -0.7 -0.3 deoxycytidine triphosphate deaminase compare
PS417_01565 -0.7 -3.4 imidazole glycerol phosphate synthase compare
PS417_10710 -0.7 -1.5 GNAT family acetyltransferase compare
PS417_02720 -0.7 -0.8 TetR family transcriptional regulator compare
PS417_10145 -0.7 -1.4 hypothetical protein compare
PS417_19935 -0.7 -2.5 hypothetical protein compare
PS417_22520 -0.7 -0.7 histidine kinase compare
PS417_23105 -0.7 -0.9 hypothetical protein compare
PS417_27865 -0.7 -1.3 LysR family transcriptional regulator compare
PS417_01850 -0.7 -2.5 phosphoribosyl-ATP pyrophosphatase (EC 3.6.1.31) (from data) compare
PS417_08620 -0.7 -0.4 hypothetical protein compare
PS417_12985 -0.7 -1.6 DNA-binding protein compare
PS417_04380 -0.6 -0.2 ABC transporter permease compare
PS417_04585 -0.6 -0.5 hypothetical protein compare
PS417_04390 -0.6 -0.8 toluene tolerance protein compare
PS417_09730 -0.6 -1.6 adenylylsulfate kinase compare
PS417_23135 -0.6 -1.2 GTP-binding protein compare
PS417_18470 -0.6 -1.7 hypothetical protein compare
PS417_18800 -0.6 -2.0 hypothetical protein compare
PS417_00975 -0.6 -1.2 hypothetical protein compare
PS417_04875 -0.6 -0.9 molybdenum cofactor biosynthesis protein MoaE compare
PS417_00385 -0.6 -0.7 Fur family transcriptional regulator compare
PS417_04960 -0.6 -1.2 hypothetical protein compare
PS417_21625 -0.6 -0.8 DNA-binding protein compare
PS417_25270 -0.6 -1.7 NrdR family transcriptional regulator compare
PS417_13235 -0.6 -2.0 siderophore biosynthesis protein compare
PS417_05985 -0.6 -1.1 chemotaxis protein CheY compare
PS417_10050 -0.6 -1.0 hypothetical protein compare
PS417_14980 -0.6 -0.7 universal stress protein UspA compare
PS417_24800 -0.6 -2.5 UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase compare
PS417_02980 -0.6 -0.8 chemotaxis protein compare
PS417_18810 -0.6 -1.6 hypothetical protein compare
PS417_06895 -0.6 -2.0 DNA-binding protein compare
PS417_17415 -0.6 -2.2 histidine kinase compare
PS417_00845 -0.6 -1.1 transcriptional regulator compare
PS417_28230 -0.6 -1.9 transcriptional regulator compare
PS417_26775 -0.6 -1.7 thiazole synthase compare
PS417_08540 -0.6 -1.2 RNA helicase compare
PS417_18205 -0.6 -0.7 aldehyde dehydrogenase compare
PS417_25295 -0.6 -2.5 hypothetical protein compare
PS417_05815 -0.6 -1.7 recombinase RecA compare
PS417_18425 -0.6 -1.0 sporulation protein compare
PS417_14045 -0.6 -1.3 alkyl hydroperoxide reductase compare
PS417_00080 -0.6 -3.3 potassium transporter peripheral membrane component compare
PS417_16310 -0.6 -2.3 membrane protein compare
PS417_13120 -0.6 -2.6 aspartyl beta-hydroxylase compare
PS417_00380 -0.6 -0.8 zinc ABC transporter ATP-binding protein compare
PS417_02110 -0.6 -1.2 acyl carrier protein compare
PS417_17440 -0.6 -1.2 beta-lactamase compare
PS417_12520 -0.6 -1.4 hypothetical protein compare
PS417_04170 -0.6 -2.4 stringent starvation protein A compare
PS417_17345 -0.6 -2.9 hypothetical protein compare
PS417_18070 -0.6 -0.8 general secretion pathway protein GspH compare
PS417_13255 -0.6 -0.8 ABC transporter compare
PS417_01855 -0.6 -1.6 phosphoribosyl-AMP cyclohydrolase compare
PS417_15640 -0.6 -1.8 DNA methylase compare
PS417_21430 -0.6 -0.6 3-oxoacyl-ACP synthase compare
PS417_21400 -0.6 -2.1 TetR family transcriptional regulator compare
PS417_17140 -0.6 -1.1 LysR family transcriptional regulator compare
PS417_07620 -0.6 -0.5 beta-hexosaminidase compare
PS417_17305 -0.6 -0.9 hypothetical protein compare
PS417_17160 -0.6 -1.6 1-aminocyclopropane-1-carboxylate deaminase compare
PS417_04270 -0.6 -2.8 ribonuclease G compare
PS417_20880 -0.6 -1.1 GntR family transcriptional regulator compare
PS417_10520 -0.6 -2.2 succinyl-CoA:3-ketoacid-CoA transferase compare
PS417_14200 -0.6 -1.1 hypothetical protein compare
PS417_12535 -0.6 -1.5 nitrilase compare
PS417_23845 -0.6 -1.7 hemin ABC transporter ATP-binding protein compare
PS417_15910 -0.5 -2.3 lysine transporter LysE compare
PS417_06445 -0.5 -1.1 iron-siderophore ABC transporter permease compare
PS417_16165 -0.5 -2.2 ABC transporter substrate-binding protein compare
PS417_00175 -0.5 -0.8 CigR compare
PS417_00065 -0.5 -0.7 3-methyladenine DNA glycosylase compare
PS417_06040 -0.5 -1.4 hypothetical protein compare
PS417_06600 -0.5 -0.6 leucine/isoleucine/valine transporter ATP-binding subunit compare
PS417_18420 -0.5 -1.5 deoxyribonuclease compare
PS417_02270 -0.5 -1.9 carbamoyltransferase compare
PS417_24605 -0.5 -1.3 thiamine-phosphate pyrophosphorylase compare
PS417_12110 -0.5 -0.7 ATP-binding protein compare
PS417_19590 -0.5 -1.5 enoyl-CoA hydratase compare
PS417_15270 -0.5 -3.2 membrane protein compare
PS417_00900 -0.5 -1.0 4-aminobutyrate aminotransferase compare
PS417_25975 -0.5 -2.7 Acyl-CoA dehydrogenase (EC 1.3.8.7) (from data) compare
PS417_19805 -0.5 -1.2 flagellar M-ring protein FliF compare
PS417_11305 -0.5 -1.6 general secretion pathway protein GspF compare
PS417_05830 -0.5 -0.9 hypothetical protein compare
PS417_15065 -0.5 -0.8 GntR family transcriptional regulator compare
PS417_04180 -0.5 -1.5 GntR family transcriptional regulator compare
PS417_08600 -0.5 -2.6 LuxR family transcriptional regulator compare
PS417_02870 -0.5 -1.8 TonB-dependent receptor compare
PS417_16750 -0.5 -0.9 ABC transporter ATP-binding protein compare
PS417_19755 -0.5 -1.0 flagellar motor switch protein FliM compare
PS417_11055 -0.5 -2.1 AraC family transcriptional regulator compare
PS417_16005 -0.5 -1.3 ATPase compare
PS417_16975 -0.5 -1.4 GNAT family acetyltransferase compare
PS417_15885 -0.5 -0.6 GCN5 family acetyltransferase compare
PS417_11535 -0.5 -0.8 nicotinate phosphoribosyltransferase compare
PS417_02475 -0.5 -1.0 N-acetylmuramoyl-L-alanine amidase compare
PS417_07510 -0.5 -1.9 aspartyl beta-hydroxylase compare
PS417_18350 -0.5 -1.1 hypothetical protein compare
PS417_13075 -0.5 -0.7 hypothetical protein compare
PS417_11275 -0.5 -1.8 general secretion pathway protein GspG compare
PS417_17190 -0.5 -2.1 MarR family transcriptional regulator compare
PS417_07000 -0.5 -1.9 hypothetical protein compare
PS417_18600 -0.5 -1.3 isopropylmalate isomerase compare
PS417_04435 -0.5 -3.4 uracil phosphoribosyltransferase compare
PS417_16535 -0.5 -1.6 NUDIX hydrolase compare
PS417_13640 -0.5 -1.3 ribose ABC transporter permease compare
PS417_13425 -0.5 -0.7 cupin compare
PS417_06190 -0.5 -2.0 sodium:proton antiporter compare


Specific Phenotypes

None in this experiment

For Pseudomonas simiae WCS417 in stress experiments

For stress 6-methoxy-2(3H)-benzoxazolone across organisms