Experiment set30S255 for Pseudomonas simiae WCS417

Compare to:

TSB 0.5x with 6-methoxy-2(3H)-benzoxazolone 1250 uM; timepoint 1

200 most important genes:

  gene name fitness t score description  
PS417_00045 -3.4 -1.3 glycerol acyltransferase compare
PS417_27795 -2.4 -0.6 orotate phosphoribosyltransferase compare
PS417_08135 -2.0 -3.7 3-phosphoshikimate 1-carboxyvinyltransferase compare
PS417_23380 -2.0 -4.3 cytochrome o ubiquinol oxidase subunit III compare
PS417_27075 -1.7 -2.7 thiol-disulfide isomerase compare
PS417_23375 -1.7 -3.3 cytochrome C oxidase compare
PS417_23950 -1.5 -1.2 polynucleotide phosphorylase/polyadenylase compare
PS417_28070 -1.5 -5.4 phosphate ABC transporter ATP-binding protein compare
PS417_06680 -1.5 -5.7 nuclease PIN compare
PS417_18310 -1.4 -0.6 hypothetical protein compare
PS417_00385 -1.4 -1.5 Fur family transcriptional regulator compare
PS417_02885 -1.3 -1.7 hypothetical protein compare
PS417_27245 -1.3 -2.2 aminotransferase DegT compare
PS417_01605 -1.3 -1.3 phosphoglycerate mutase compare
PS417_03455 -1.3 -2.4 type III secretion protein compare
PS417_01915 -1.2 -0.3 ATP-dependent protease ATP-binding subunit HslU compare
PS417_23385 -1.2 -5.2 cytochrome o ubiquinol oxidase subunit I compare
PS417_23390 -1.1 -5.8 ubiquinol oxidase subunit II compare
PS417_23490 -1.0 -1.6 dihydrofolate reductase compare
PS417_24605 -1.0 -3.3 thiamine-phosphate pyrophosphorylase compare
PS417_23370 -1.0 -3.5 protoheme IX farnesyltransferase compare
PS417_13175 -1.0 -2.2 iron transporter compare
PS417_03260 -1.0 -0.9 5S ribosomal RNA compare
PS417_26775 -1.0 -4.6 thiazole synthase compare
PS417_24675 -1.0 -2.3 lipoyl synthase compare
PS417_20705 -0.9 -1.9 cbb3-type cytochrome c oxidase subunit II compare
PS417_23995 -0.9 -1.0 preprotein translocase subunit SecG compare
PS417_09085 -0.9 -1.3 hypothetical protein compare
PS417_28080 -0.9 -6.1 phosphate ABC transporter permease compare
PS417_02880 -0.9 -0.3 copper chaperone compare
PS417_17440 -0.9 -1.7 beta-lactamase compare
PS417_07710 -0.9 -1.6 membrane protein compare
PS417_05975 -0.9 -0.6 chemotaxis protein CheW compare
PS417_19955 -0.9 -1.3 hypothetical protein compare
PS417_16160 -0.9 -2.0 ABC transporter substrate-binding protein compare
PS417_02280 -0.9 -1.4 GlcNAc-PI de-N-acetylase compare
PS417_24615 -0.8 -0.6 hypothetical protein compare
PS417_11485 -0.8 -1.5 AraC family transcriptional regulator compare
PS417_02555 -0.8 -5.1 exoribonuclease R compare
PS417_24705 -0.8 -1.2 D-alanyl-D-alanine carboxypeptidase compare
PS417_27945 -0.8 -1.4 type VI secretion protein ImpA compare
PS417_13300 -0.8 -2.5 short-chain dehydrogenase compare
PS417_25905 -0.8 -2.5 AsnC family transcriptional regulator compare
PS417_07795 -0.8 -2.2 hypothetical protein compare
PS417_00185 -0.8 -1.4 tryptophan synthase subunit beta compare
PS417_02745 -0.8 -1.0 FMN-dependent NADH-azoreductase compare
PS417_05475 -0.8 -2.2 arginase compare
PS417_27300 -0.8 -0.6 cell division protein ZapA compare
PS417_19065 -0.8 -1.0 monooxygenase compare
PS417_23315 -0.7 -1.1 transcriptional regulator compare
PS417_27865 -0.7 -2.0 LysR family transcriptional regulator compare
PS417_24790 -0.7 -2.3 hypothetical protein compare
PS417_05985 -0.7 -1.8 chemotaxis protein CheY compare
PS417_09655 -0.7 -2.7 RNA polymerase sigma factor compare
PS417_07940 -0.7 -2.0 hypothetical protein compare
PS417_21360 -0.7 -0.9 termination factor Rho compare
PS417_22085 -0.7 -1.7 aldehyde dehydrogenase compare
PS417_06200 -0.7 -3.0 protein-PII uridylyltransferase compare
PS417_09475 -0.7 -2.1 class V aminotransferase compare
PS417_22520 -0.7 -0.9 histidine kinase compare
PS417_09160 -0.7 -1.5 GNAT family acetyltransferase compare
PS417_23915 -0.7 -1.1 pantoate--beta-alanine ligase compare
PS417_24320 -0.7 -2.4 large-conductance mechanosensitive channel compare
PS417_21625 -0.7 -0.9 DNA-binding protein compare
PS417_10445 -0.7 -2.4 LysR family transcriptional regulator compare
PS417_01300 -0.7 -2.8 thioesterase compare
PS417_25915 -0.7 -2.1 carbon-nitrogen hydrolase compare
PS417_10710 -0.7 -2.0 GNAT family acetyltransferase compare
PS417_04380 -0.7 -0.3 ABC transporter permease compare
PS417_11865 -0.7 -1.6 xylose isomerase compare
PS417_24600 -0.6 -4.1 hydrogenase compare
PS417_02255 -0.6 -1.8 lipopolysaccharide kinase compare
PS417_08090 -0.6 -0.6 3-oxoacyl-ACP reductase compare
PS417_02845 -0.6 -2.0 ABC transporter permease compare
PS417_07170 -0.6 -2.0 hypothetical protein compare
PS417_01565 -0.6 -2.8 imidazole glycerol phosphate synthase compare
PS417_17805 -0.6 -1.8 microcin B17 processing protein McbC compare
PS417_18150 -0.6 -1.6 chemotaxis protein CheY compare
PS417_05125 -0.6 -2.7 sugar ABC transporter substrate-binding protein compare
PS417_01850 -0.6 -2.7 phosphoribosyl-ATP pyrophosphatase (EC 3.6.1.31) (from data) compare
PS417_15505 -0.6 -1.9 glutaminase compare
PS417_08540 -0.6 -1.4 RNA helicase compare
PS417_09575 -0.6 -1.1 glutathione S-transferase compare
PS417_05830 -0.6 -1.3 hypothetical protein compare
PS417_24500 -0.6 -1.5 DEAD/DEAH box helicase compare
PS417_25825 -0.6 -2.4 sulfurtransferase compare
PS417_05010 -0.6 -1.2 IclR family transcriptional regulator compare
PS417_10840 -0.6 -1.5 amidase compare
PS417_20125 -0.6 -2.3 phosphoribosylglycinamide formyltransferase compare
PS417_16515 -0.6 -1.7 Clp protease ClpS compare
PS417_00390 -0.6 -2.7 ABC transporter substrate-binding protein compare
PS417_19555 -0.6 -2.5 RNA polymerase sigma70 compare
PS417_11540 -0.6 -2.4 NAD synthetase compare
PS417_00375 -0.6 -1.2 membrane protein compare
PS417_16195 -0.6 -0.7 AraC family transcriptional regulator compare
PS417_13165 -0.6 -1.1 peroxidase compare
PS417_22575 -0.6 -2.8 exonuclease I compare
PS417_13425 -0.6 -1.3 cupin compare
PS417_22205 -0.5 -2.9 potassium transporter TrkH compare
PS417_02560 -0.5 -0.9 23S rRNA methyltransferase compare
PS417_26990 -0.5 -0.4 RNA pyrophosphohydrolase compare
PS417_25295 -0.5 -2.0 hypothetical protein compare
PS417_02805 -0.5 -1.2 urease subunit gamma compare
PS417_18070 -0.5 -0.8 general secretion pathway protein GspH compare
PS417_04865 -0.5 -0.6 molybdenum cofactor biosynthesis protein MoaC compare
PS417_14540 -0.5 -1.0 cytochrome C oxidase subunit III compare
PS417_12175 -0.5 -2.2 peptide ABC transporter permease compare
PS417_21865 -0.5 -2.5 hypothetical protein compare
PS417_13140 -0.5 -1.2 oxidoreductase compare
PS417_16400 -0.5 -1.1 NAD(P)H-quinone oxidoreductase compare
PS417_03915 -0.5 -1.7 tRNA-Thr compare
PS417_17480 -0.5 -2.2 branched-chain amino acid ABC transporter substrate-binding protein compare
PS417_12335 -0.5 -2.1 cobalt transporter compare
PS417_18885 -0.5 -0.9 GntR family transcriptional regulator compare
PS417_27425 -0.5 -3.0 exopolyphosphatase compare
PS417_20715 -0.5 -0.6 cytochrome Cbb3 compare
PS417_05140 -0.5 -1.4 dipicolinate synthase compare
PS417_15035 -0.5 -0.9 alkylhydroperoxidase compare
PS417_14580 -0.5 -1.6 saccharopine dehydrogenase compare
PS417_14815 -0.5 -1.2 diguanylate cyclase compare
PS417_25765 -0.5 -1.0 transcriptional regulator compare
PS417_04055 -0.5 -1.7 peptide transporter compare
PS417_08680 -0.5 -1.4 flagellar biosynthesis protein FlhB compare
PS417_14165 -0.5 -1.5 ArsR family transcriptional regulator compare
PS417_15590 -0.5 -1.4 hypothetical protein compare
PS417_09605 -0.5 -1.2 glycosyl transferase compare
PS417_17755 -0.5 -1.4 hypothetical protein compare
PS417_25315 -0.5 -1.7 membrane protein compare
PS417_00345 -0.5 -0.9 copper-binding protein compare
PS417_27800 -0.5 -0.6 exodeoxyribonuclease III compare
PS417_16555 -0.5 -0.6 cupin compare
PS417_15285 -0.5 -0.7 type VI secretion protein compare
PS417_04305 -0.5 -0.9 aspartate ammonia-lyase compare
PS417_16310 -0.5 -1.6 membrane protein compare
PS417_22570 -0.5 -0.3 H-NS histone compare
PS417_08410 -0.5 -0.9 hypothetical protein compare
PS417_01435 -0.5 -0.9 hypothetical protein compare
PS417_04690 -0.5 -1.8 transcriptional regulator compare
PS417_03380 -0.5 -0.8 hypothetical protein compare
PS417_05290 -0.5 -2.9 hypothetical protein compare
PS417_07075 -0.5 -2.4 tricarboxylic transport membrane protein compare
PS417_05580 -0.5 -2.9 glycerol uptake facilitator GlpF compare
PS417_13805 -0.5 -2.6 4-amino-4-deoxy-L-arabinose transferase compare
PS417_26530 -0.5 -0.9 hypothetical protein compare
PS417_19675 -0.5 -2.0 chemotaxis protein CheY compare
PS417_06770 -0.5 -1.6 multidrug transporter compare
PS417_01560 -0.5 -1.2 imidazoleglycerol-phosphate dehydratase compare
PS417_27135 -0.5 -0.4 glutamine synthetase compare
PS417_11405 -0.5 -2.0 precorrin 6A synthase compare
PS417_00960 -0.5 -1.6 transcriptional regulator compare
PS417_21285 -0.5 -2.2 hypothetical protein compare
PS417_25895 -0.5 -1.3 glyoxalase compare
PS417_20785 -0.5 -0.5 transcriptional regulator compare
PS417_09150 -0.5 -1.2 energy transducer TonB compare
PS417_08685 -0.5 -0.6 flagellar hook-length control protein FliK compare
PS417_07655 -0.5 -1.5 glycerophosphodiester phosphodiesterase compare
PS417_04385 -0.5 -0.7 organic solvent ABC transporter substrate-binding protein compare
PS417_16495 -0.5 -1.6 leucyl/phenylalanyl-tRNA--protein transferase compare
PS417_04270 -0.5 -2.5 ribonuclease G compare
PS417_00080 -0.5 -2.8 potassium transporter peripheral membrane component compare
PS417_19350 -0.5 -1.8 GTP cyclohydrolase compare
PS417_04310 -0.5 -2.4 hypothetical protein compare
PS417_15800 -0.5 -2.5 photosynthetic protein synthase I compare
PS417_10335 -0.5 -1.4 peroxiredoxin compare
PS417_11585 -0.5 -1.1 LuxR family transcriptional regulator compare
PS417_24575 -0.5 -0.8 hypothetical protein compare
PS417_02080 -0.5 -1.7 histidine ammonia-lyase compare
PS417_18940 -0.5 -1.6 LysR family transcriptional regulator compare
PS417_28140 -0.5 -1.1 asparaginase compare
PS417_01095 -0.5 -0.7 amino acid ABC transporter ATP-binding protein compare
PS417_10225 -0.5 -2.0 chitinase compare
PS417_17000 -0.4 -1.2 MerR family transcriptional regulator compare
PS417_23080 -0.4 -2.1 sugar ABC transporter ATPase compare
PS417_03935 -0.4 -1.5 N-acetyl-anhydromuranmyl-L-alanine amidase compare
PS417_16055 -0.4 -1.3 biopolymer transporter TolR compare
PS417_08830 -0.4 -1.9 membrane protein compare
PS417_11670 -0.4 -1.0 multidrug transporter MATE compare
PS417_09305 -0.4 -1.8 hypothetical protein compare
PS417_10300 -0.4 -2.8 protease compare
PS417_02720 -0.4 -0.6 TetR family transcriptional regulator compare
PS417_21140 -0.4 -1.5 LysR family transcriptional regulator compare
PS417_04650 -0.4 -0.3 D-alanine--D-alanine ligase compare
PS417_27745 -0.4 -2.8 gamma-glutamyl-gamma-aminobutyraldehyde dehydrogenase (EC 1.2.1.99); 4-guanidinobutyraldehyde dehydrogenase (EC 1.2.1.54) (from data) compare
PS417_04420 -0.4 -2.5 histidinol dehydrogenase compare
PS417_21255 -0.4 -1.0 hypothetical protein compare
PS417_16420 -0.4 -2.5 membrane protein compare
PS417_13865 -0.4 -2.0 bestrophin compare
PS417_19360 -0.4 -1.2 hypothetical protein compare
PS417_10095 -0.4 -1.0 hypothetical protein compare
PS417_18490 -0.4 -1.1 hypothetical protein compare
PS417_20725 -0.4 -0.9 cbb3-type cytochrome c oxidase subunit II compare
PS417_07825 -0.4 -1.7 transposase compare
PS417_15895 -0.4 -1.2 iron dicitrate transport regulator FecR compare
PS417_13460 -0.4 -1.5 peptidase compare
PS417_21425 -0.4 -0.9 4-amino-4-deoxychorismate lyase compare
PS417_17550 -0.4 -1.6 branched-chain alpha-ketoacid dehydrogenase, E1 component beta subunit (EC 1.2.4.4) (from data) compare
PS417_20780 -0.4 -2.0 hypothetical protein compare
PS417_26230 -0.4 -2.2 electron transfer flavoprotein subunit alpha compare
PS417_15875 -0.4 -0.9 LuxR family transcriptional regulator compare
PS417_14210 -0.4 -1.6 hypothetical protein compare


Specific Phenotypes

None in this experiment

For Pseudomonas simiae WCS417 in stress experiments

For stress 6-methoxy-2(3H)-benzoxazolone across organisms