Experiment set30S250 for Pseudomonas simiae WCS417

Compare to:

TSB 0.5x with Dimethyl Sulfoxide 0.5 vol%; timepoint 1

200 most important genes:

  gene name fitness t score description  
PS417_06375 -3.4 -1.1 deoxycytidine triphosphate deaminase compare
PS417_27795 -2.5 -0.8 orotate phosphoribosyltransferase compare
PS417_23770 -2.3 -2.2 exodeoxyribonuclease V subunit alpha compare
PS417_08125 -2.3 -0.8 prephenate dehydratase compare
PS417_00045 -2.2 -1.5 glycerol acyltransferase compare
PS417_18310 -1.5 -0.8 hypothetical protein compare
PS417_02485 -1.5 -2.7 tRNA delta(2)-isopentenylpyrophosphate transferase compare
PS417_27245 -1.3 -3.0 aminotransferase DegT compare
PS417_04385 -1.3 -1.5 organic solvent ABC transporter substrate-binding protein compare
PS417_23950 -1.3 -1.4 polynucleotide phosphorylase/polyadenylase compare
PS417_01915 -1.2 -0.4 ATP-dependent protease ATP-binding subunit HslU compare
PS417_21430 -1.2 -1.8 3-oxoacyl-ACP synthase compare
PS417_23370 -1.2 -7.0 protoheme IX farnesyltransferase compare
PS417_01920 -1.2 -0.7 ATP-dependent protease subunit HslV compare
PS417_04365 -1.2 -1.4 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase compare
PS417_02885 -1.1 -1.9 hypothetical protein compare
PS417_23915 -1.1 -2.2 pantoate--beta-alanine ligase compare
PS417_06680 -1.0 -4.1 nuclease PIN compare
PS417_17645 -1.0 -2.2 RND transporter compare
PS417_15705 -1.0 -2.3 nitrate reductase compare
PS417_03260 -1.0 -1.2 5S ribosomal RNA compare
PS417_26990 -1.0 -0.8 RNA pyrophosphohydrolase compare
PS417_27875 -1.0 -6.4 histidine kinase compare
PS417_04585 -1.0 -0.9 hypothetical protein compare
PS417_02555 -0.9 -5.9 exoribonuclease R compare
PS417_02880 -0.9 -0.4 copper chaperone compare
PS417_02280 -0.9 -1.7 GlcNAc-PI de-N-acetylase compare
PS417_08540 -0.9 -2.3 RNA helicase compare
PS417_14400 -0.9 -2.7 hypothetical protein compare
PS417_06685 -0.9 -1.1 beta-ketoadipyl CoA thiolase compare
PS417_06530 -0.8 -1.2 membrane protein compare
PS417_25650 -0.8 -2.0 anhydro-N-acetylmuramic acid kinase compare
PS417_23380 -0.8 -2.5 cytochrome o ubiquinol oxidase subunit III compare
PS417_27300 -0.8 -0.8 cell division protein ZapA compare
PS417_17780 -0.8 -1.5 Ais protein compare
PS417_28070 -0.8 -4.6 phosphate ABC transporter ATP-binding protein compare
PS417_12855 -0.8 -2.7 3-phosphoshikimate 1-carboxyvinyltransferase compare
PS417_20025 -0.8 -1.9 alpha-ribazole phosphatase compare
PS417_18105 -0.7 -1.4 iron-dicitrate transporter substrate-binding subunit compare
PS417_24225 -0.7 -2.0 hypothetical protein compare
PS417_23385 -0.7 -5.1 cytochrome o ubiquinol oxidase subunit I compare
PS417_23375 -0.7 -2.1 cytochrome C oxidase compare
PS417_04380 -0.7 -0.4 ABC transporter permease compare
PS417_02805 -0.7 -1.8 urease subunit gamma compare
PS417_08170 -0.7 -4.1 capsular biosynthesis protein compare
PS417_14655 -0.7 -1.1 lysine transporter LysE compare
PS417_23390 -0.7 -4.6 ubiquinol oxidase subunit II compare
PS417_24600 -0.7 -3.7 hydrogenase compare
PS417_06335 -0.6 -2.4 S-formylglutathione hydrolase compare
PS417_01605 -0.6 -0.8 phosphoglycerate mutase compare
PS417_01405 -0.6 -2.8 sugar transporter compare
PS417_14065 -0.6 -3.4 UTP--glucose-1-phosphate uridylyltransferase compare
PS417_13990 -0.6 -1.3 LysR family transcriptional regulator compare
PS417_19350 -0.6 -2.8 GTP cyclohydrolase compare
PS417_07140 -0.6 -1.5 peptidase M48 compare
PS417_22945 -0.6 -2.0 phosphoribosylglycinamide formyltransferase compare
PS417_27195 -0.6 -1.1 N-acetylglutamate synthase compare
PS417_18425 -0.6 -1.4 sporulation protein compare
PS417_19955 -0.6 -1.6 hypothetical protein compare
PS417_04410 -0.6 -1.7 hypothetical protein compare
PS417_17610 -0.6 -1.6 AsnC family transcriptional regulator compare
PS417_21165 -0.6 -1.9 LysR family transcriptional regulator compare
PS417_24500 -0.6 -2.4 DEAD/DEAH box helicase compare
PS417_09245 -0.6 -1.5 recombinase RdgC compare
PS417_25790 -0.6 -2.4 aminoglycoside phosphotransferase compare
PS417_09160 -0.6 -2.0 GNAT family acetyltransferase compare
PS417_28080 -0.6 -4.9 phosphate ABC transporter permease compare
PS417_19675 -0.6 -2.4 chemotaxis protein CheY compare
PS417_20610 -0.6 -1.1 hypothetical protein compare
PS417_26370 -0.6 -2.8 RNA helicase compare
PS417_08135 -0.6 -1.6 3-phosphoshikimate 1-carboxyvinyltransferase compare
PS417_13175 -0.6 -1.1 iron transporter compare
PS417_24675 -0.6 -1.4 lipoyl synthase compare
PS417_14580 -0.6 -2.8 saccharopine dehydrogenase compare
PS417_14455 -0.5 -1.1 polyketide cyclase compare
PS417_16815 -0.5 -1.3 acyl-CoA dehydrogenase compare
PS417_02440 -0.5 -1.7 flagellar motor protein MotB compare
PS417_18490 -0.5 -2.0 hypothetical protein compare
PS417_26775 -0.5 -4.1 thiazole synthase compare
PS417_22175 -0.5 -1.5 amino acid transporter LysE compare
PS417_06200 -0.5 -2.7 protein-PII uridylyltransferase compare
PS417_00385 -0.5 -0.9 Fur family transcriptional regulator compare
PS417_04915 -0.5 -1.7 glutamine ABC transporter ATP-binding protein compare
PS417_11585 -0.5 -1.1 LuxR family transcriptional regulator compare
PS417_26660 -0.5 -2.8 protein PilI compare
PS417_25275 -0.5 -1.8 hypothetical protein compare
PS417_15975 -0.5 -1.5 glutamate carboxypeptidase compare
PS417_09305 -0.5 -2.3 hypothetical protein compare
PS417_13250 -0.5 -2.5 ABC transporter compare
PS417_22565 -0.5 -0.3 formyltetrahydrofolate deformylase compare
PS417_11485 -0.5 -1.5 AraC family transcriptional regulator compare
PS417_27940 -0.5 -1.6 type VI secretion protein compare
PS417_20705 -0.5 -1.1 cbb3-type cytochrome c oxidase subunit II compare
PS417_15790 -0.5 -2.5 hypothetical protein compare
PS417_18070 -0.5 -0.9 general secretion pathway protein GspH compare
PS417_05165 -0.5 -2.3 cytosol aminopeptidase compare
PS417_12160 -0.5 -2.4 Fis family transcriptional regulator compare
PS417_16310 -0.5 -1.8 membrane protein compare
PS417_14295 -0.5 -1.5 AraC family transcriptional regulator compare
PS417_16515 -0.5 -2.1 Clp protease ClpS compare
PS417_15450 -0.5 -2.0 ABC transporter permease compare
PS417_26635 -0.5 -1.2 hypothetical protein compare
PS417_21285 -0.5 -2.3 hypothetical protein compare
PS417_23545 -0.5 -1.2 gamma-glutamyl kinase compare
PS417_20785 -0.5 -0.6 transcriptional regulator compare
PS417_27340 -0.5 -1.9 NADPH:quinone oxidoreductase compare
PS417_21760 -0.5 -0.7 hypothetical protein compare
PS417_10130 -0.5 -2.6 hypothetical protein compare
PS417_01850 -0.5 -1.9 phosphoribosyl-ATP pyrophosphatase (EC 3.6.1.31) (from data) compare
PS417_20775 -0.5 -1.6 coproporphyrinogen III oxidase compare
PS417_00185 -0.5 -1.0 tryptophan synthase subunit beta compare
PS417_02385 -0.5 -0.8 esterase compare
PS417_12390 -0.5 -1.1 hypothetical protein compare
PS417_08090 -0.5 -0.5 3-oxoacyl-ACP reductase compare
PS417_15115 -0.5 -1.9 exonuclease SbcD compare
PS417_01290 -0.5 -1.4 ADP-ribose diphosphatase compare
PS417_22825 -0.5 -3.2 hypothetical protein compare
PS417_27425 -0.5 -2.7 exopolyphosphatase compare
PS417_06500 -0.4 -1.1 hypothetical protein compare
PS417_13895 -0.4 -1.9 chemotaxis protein CheB compare
PS417_22935 -0.4 -1.8 hypothetical protein compare
PS417_26530 -0.4 -1.1 hypothetical protein compare
PS417_08515 -0.4 -1.3 hypothetical protein compare
PS417_28075 -0.4 -2.8 phosphate ABC transporter permease compare
PS417_26115 -0.4 -2.3 glutamine ABC transporter ATP-binding protein compare
PS417_01955 -0.4 -3.1 peptidase compare
PS417_27800 -0.4 -0.6 exodeoxyribonuclease III compare
PS417_24555 -0.4 -2.2 polyribonucleotide nucleotidyltransferase compare
PS417_01715 -0.4 -0.9 hypothetical protein compare
PS417_24535 -0.4 -1.1 membrane protein compare
PS417_18395 -0.4 -0.9 D-ribose ABC transporter, permease component RbsC (from data) compare
PS417_11545 -0.4 -1.6 spermidine/putrescine ABC transporter substrate-binding protein compare
PS417_02695 -0.4 -1.2 protein hupE compare
PS417_08770 -0.4 -1.7 hypothetical protein compare
PS417_08435 -0.4 -1.4 pilus assembly protein PilZ compare
PS417_24705 -0.4 -0.8 D-alanyl-D-alanine carboxypeptidase compare
PS417_26290 -0.4 -1.7 4-hydroxybenzoyl-CoA thioesterase compare
PS417_09150 -0.4 -1.1 energy transducer TonB compare
PS417_14755 -0.4 -1.1 UV damage repair endonuclease UvdE compare
PS417_19425 -0.4 -0.7 allantoicase compare
PS417_01385 -0.4 -1.5 NAD-dependent dehydratase compare
PS417_23530 -0.4 -2.2 1,2-oxophytodienoate reductase compare
PS417_23995 -0.4 -0.7 preprotein translocase subunit SecG compare
PS417_22620 -0.4 -1.4 pyruvate kinase compare
PS417_13455 -0.4 -1.4 alkaline proteinase inhibitor compare
PS417_21270 -0.4 -0.8 translation initiation factor 2 compare
PS417_03560 -0.4 -0.4 GTP-binding protein compare
PS417_21480 -0.4 -0.7 23S rRNA pseudouridylate synthase compare
PS417_24400 -0.4 -2.3 peptidase compare
PS417_19970 -0.4 -2.3 recombinase RmuC compare
PS417_15090 -0.4 -1.3 hypothetical protein compare
PS417_22990 -0.4 -0.8 iron dicitrate transport regulator FecR compare
PS417_12540 -0.4 -1.8 hypothetical protein compare
PS417_15285 -0.4 -0.7 type VI secretion protein compare
PS417_13620 -0.4 -0.9 thermostable hemolysin compare
PS417_08320 -0.4 -1.6 metal-chelation protein CHAD compare
PS417_05475 -0.4 -1.8 arginase compare
PS417_16080 -0.4 -1.1 AraC family transcriptional regulator compare
PS417_06745 -0.4 -0.9 polysaccharide deacetylase compare
PS417_23765 -0.4 -1.9 hypothetical protein compare
PS417_11375 -0.4 -1.4 hypothetical protein compare
PS417_10720 -0.4 -1.4 chemotaxis protein CheY compare
PS417_07620 -0.4 -0.4 beta-hexosaminidase compare
PS417_26835 -0.4 -2.3 3-mercaptopyruvate sulfurtransferase compare
PS417_06030 -0.4 -1.7 hypothetical protein compare
PS417_14075 -0.4 -1.1 hypothetical protein compare
PS417_11360 -0.4 -1.4 energy transducer TonB compare
PS417_02435 -0.4 -2.4 flagellar motor protein MotA compare
PS417_19835 -0.4 -0.7 flagellar biosynthesis protein FliS compare
PS417_09680 -0.4 -1.2 hydrolase compare
PS417_14145 -0.4 -2.4 hypothetical protein compare
PS417_22445 -0.4 -1.1 ATP-dependent DNA helicase RuvB compare
PS417_07175 -0.4 -2.1 beta-lactamase compare
PS417_22520 -0.4 -0.6 histidine kinase compare
PS417_03705 -0.4 -2.0 2-alkenal reductase compare
PS417_07795 -0.4 -1.5 hypothetical protein compare
PS417_21015 -0.4 -1.2 EstX protein compare
PS417_23015 -0.4 -1.2 NGG1p interacting factor 3 protein, NIF3 compare
PS417_00495 -0.4 -1.3 ABC transporter permease compare
PS417_09605 -0.4 -1.0 glycosyl transferase compare
PS417_08685 -0.4 -1.0 flagellar hook-length control protein FliK compare
PS417_26605 -0.4 -0.9 malonate decarboxylase subunit beta compare
PS417_20245 -0.4 -1.7 copper resistance protein CopD compare
PS417_11865 -0.4 -1.6 xylose isomerase compare
PS417_02990 -0.4 -1.6 hypothetical protein compare
PS417_07170 -0.4 -1.5 hypothetical protein compare
PS417_17440 -0.4 -1.1 beta-lactamase compare
PS417_06045 -0.4 -1.1 membrane protein compare
PS417_10435 -0.4 -1.6 serine/threonine protein kinase compare
PS417_14905 -0.4 -1.5 C4-dicarboxylate ABC transporter compare
PS417_01875 -0.4 -0.8 polyhydroxyalkanoic acid system protein compare
PS417_17580 -0.4 -1.3 citrulline utilization hydrolase (from data) compare
PS417_22815 -0.4 -1.9 permease compare
PS417_17415 -0.4 -1.4 histidine kinase compare
PS417_14235 -0.4 -1.7 hypothetical protein compare
PS417_14935 -0.4 -0.9 transposase compare
PS417_21140 -0.4 -1.4 LysR family transcriptional regulator compare
PS417_24775 -0.4 -2.0 dehydratase compare
PS417_01815 -0.4 -0.7 peptide ABC transporter ATP-binding protein compare
PS417_27295 -0.4 -1.6 hypothetical protein compare


Specific Phenotypes

None in this experiment

For Pseudomonas simiae WCS417 in no stress control experiments

For no stress control Dimethyl Sulfoxide across organisms