Experiment set30S218 for Pseudomonas simiae WCS417

Compare to:

LB_control

200 most important genes:

  gene name fitness t score description  
PS417_27795 -2.6 -0.6 orotate phosphoribosyltransferase compare
PS417_02280 -2.4 -2.2 GlcNAc-PI de-N-acetylase compare
PS417_22450 -2.1 -1.3 ATP-dependent DNA helicase RuvA compare
PS417_01920 -2.0 -0.7 ATP-dependent protease subunit HslV compare
PS417_01605 -1.9 -1.6 phosphoglycerate mutase compare
PS417_26175 -1.7 -1.7 sarcosine oxidase subunit gamma compare
PS417_18310 -1.7 -0.7 hypothetical protein compare
PS417_24615 -1.6 -1.2 hypothetical protein compare
PS417_22520 -1.6 -1.7 histidine kinase compare
PS417_23915 -1.6 -3.8 pantoate--beta-alanine ligase compare
PS417_20715 -1.5 -2.0 cytochrome Cbb3 compare
PS417_06680 -1.5 -5.2 nuclease PIN compare
PS417_04365 -1.5 -1.3 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase compare
PS417_22060 -1.4 -1.5 hypothetical protein compare
PS417_00045 -1.4 -0.9 glycerol acyltransferase compare
PS417_27245 -1.4 -3.5 aminotransferase DegT compare
PS417_01915 -1.3 -0.3 ATP-dependent protease ATP-binding subunit HslU compare
PS417_07305 -1.2 -2.4 3-beta hydroxysteroid dehydrogenase compare
PS417_24500 -1.2 -3.6 DEAD/DEAH box helicase compare
PS417_04390 -1.2 -2.1 toluene tolerance protein compare
PS417_06245 -1.2 -1.5 zinc metallopeptidase RseP compare
PS417_27300 -1.1 -0.8 cell division protein ZapA compare
PS417_21430 -1.1 -1.5 3-oxoacyl-ACP synthase compare
PS417_11485 -1.0 -1.7 AraC family transcriptional regulator compare
PS417_01560 -1.0 -2.0 imidazoleglycerol-phosphate dehydratase compare
PS417_16160 -1.0 -2.0 ABC transporter substrate-binding protein compare
PS417_27865 -1.0 -1.6 LysR family transcriptional regulator compare
PS417_02880 -1.0 -0.3 copper chaperone compare
PS417_06945 -1.0 -1.3 membrane protein compare
PS417_02415 -0.9 -2.7 phosphoserine phosphatase compare
PS417_20025 -0.9 -1.7 alpha-ribazole phosphatase compare
PS417_21630 -0.9 -1.2 magnesium transporter compare
PS417_06685 -0.9 -0.9 beta-ketoadipyl CoA thiolase compare
PS417_26990 -0.8 -0.6 RNA pyrophosphohydrolase compare
PS417_23490 -0.8 -1.2 dihydrofolate reductase compare
PS417_23770 -0.8 -1.0 exodeoxyribonuclease V subunit alpha compare
PS417_08135 -0.8 -1.9 3-phosphoshikimate 1-carboxyvinyltransferase compare
PS417_02255 -0.8 -1.9 lipopolysaccharide kinase compare
PS417_15875 -0.8 -2.1 LuxR family transcriptional regulator compare
PS417_23390 -0.8 -5.1 ubiquinol oxidase subunit II compare
PS417_05040 -0.8 -2.1 amino acid dehydrogenase compare
PS417_01630 -0.8 -1.6 hypothetical protein compare
PS417_02805 -0.8 -1.7 urease subunit gamma compare
PS417_06040 -0.8 -2.4 hypothetical protein compare
PS417_10390 -0.8 -2.4 RNA polymerase subunit sigma24 compare
PS417_02115 -0.8 -4.0 acyltransferase compare
PS417_23995 -0.8 -0.9 preprotein translocase subunit SecG compare
PS417_07470 -0.8 -1.0 hypothetical protein compare
PS417_27040 -0.7 -1.5 3-phosphoglycerate dehydrogenase compare
PS417_23160 -0.7 -0.9 50S rRNA methyltransferase compare
PS417_07565 -0.7 -0.9 hypothetical protein compare
PS417_04380 -0.7 -0.3 ABC transporter permease compare
PS417_02895 -0.7 -1.3 precorrin-6Y C5,15-methyltransferase compare
PS417_19675 -0.7 -2.2 chemotaxis protein CheY compare
PS417_23545 -0.7 -1.3 gamma-glutamyl kinase compare
PS417_02560 -0.7 -1.5 23S rRNA methyltransferase compare
PS417_23385 -0.7 -4.4 cytochrome o ubiquinol oxidase subunit I compare
PS417_27075 -0.7 -1.6 thiol-disulfide isomerase compare
PS417_09300 -0.7 -2.2 peptidylprolyl isomerase compare
PS417_19065 -0.7 -1.0 monooxygenase compare
PS417_12870 -0.7 -1.5 enoyl-CoA hydratase compare
PS417_23370 -0.7 -3.3 protoheme IX farnesyltransferase compare
PS417_05235 -0.7 -1.8 peptidase inhibitor I42 compare
PS417_08320 -0.7 -2.3 metal-chelation protein CHAD compare
PS417_24370 -0.7 -0.8 (2Fe-2S)-binding protein compare
PS417_26230 -0.7 -2.2 electron transfer flavoprotein subunit alpha compare
PS417_13145 -0.7 -1.4 50S ribosomal protein L21 compare
PS417_03260 -0.7 -0.5 5S ribosomal RNA compare
PS417_01030 -0.7 -1.1 glutamine ABC transporter substrate-binding protein compare
PS417_10245 -0.7 -1.4 hypothetical protein compare
PS417_26370 -0.7 -2.6 RNA helicase compare
PS417_17610 -0.6 -0.9 AsnC family transcriptional regulator compare
PS417_24115 -0.6 -1.7 hypothetical protein compare
PS417_19955 -0.6 -1.4 hypothetical protein compare
PS417_05475 -0.6 -2.9 arginase compare
PS417_11510 -0.6 -1.2 AraC family transcriptional regulator compare
PS417_22815 -0.6 -2.5 permease compare
PS417_02885 -0.6 -1.0 hypothetical protein compare
PS417_05865 -0.6 -1.7 hypothetical protein compare
PS417_09930 -0.6 -1.2 hypothetical protein compare
PS417_27875 -0.6 -3.7 histidine kinase compare
PS417_18205 -0.6 -1.7 aldehyde dehydrogenase compare
PS417_13185 -0.6 -1.8 RND transporter compare
PS417_07560 -0.6 -1.1 universal stress protein UspA compare
PS417_26340 -0.6 -3.0 betaine-aldehyde dehydrogenase compare
PS417_23375 -0.6 -1.6 cytochrome C oxidase compare
PS417_04690 -0.6 -1.5 transcriptional regulator compare
PS417_19630 -0.6 -1.4 LuxR family transcriptional regulator compare
PS417_26420 -0.6 -0.6 hypothetical protein compare
PS417_25270 -0.6 -1.8 NrdR family transcriptional regulator compare
PS417_22575 -0.6 -3.3 exonuclease I compare
PS417_27945 -0.6 -0.9 type VI secretion protein ImpA compare
PS417_26755 -0.6 -1.2 nucleoside-triphosphate diphosphatase compare
PS417_15285 -0.6 -0.8 type VI secretion protein compare
PS417_22445 -0.6 -1.3 ATP-dependent DNA helicase RuvB compare
PS417_06530 -0.6 -1.0 membrane protein compare
PS417_13625 -0.6 -1.8 cytochrome B561 compare
PS417_01575 -0.6 -2.2 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (from data) compare
PS417_08685 -0.6 -1.0 flagellar hook-length control protein FliK compare
PS417_07400 -0.6 -1.5 hypothetical protein compare
PS417_15410 -0.6 -1.7 hypothetical protein compare
PS417_19350 -0.6 -2.2 GTP cyclohydrolase compare
PS417_24230 -0.6 -2.8 ATP-dependent protease compare
PS417_16310 -0.6 -2.2 membrane protein compare
PS417_27705 -0.6 -1.3 amino acid dehydrogenase compare
PS417_00295 -0.6 -2.7 hypothetical protein compare
PS417_27870 -0.6 -1.9 ATP-dependent DNA helicase RecG compare
PS417_23360 -0.6 -0.8 hypothetical protein compare
PS417_14815 -0.6 -1.6 diguanylate cyclase compare
PS417_05815 -0.6 -2.9 recombinase RecA compare
PS417_18595 -0.6 -2.5 3-isopropylmalate dehydratase compare
PS417_24535 -0.6 -1.7 membrane protein compare
PS417_01135 -0.6 -1.7 taurine dioxygenase compare
PS417_13580 -0.6 -2.2 AraC family transcriptional regulator compare
PS417_02340 -0.5 -2.6 LysR family transcriptional regulator compare
PS417_09680 -0.5 -1.3 hydrolase compare
PS417_22855 -0.5 -2.2 ssDNA exonuclease RecJ compare
PS417_04435 -0.5 -3.6 uracil phosphoribosyltransferase compare
PS417_17140 -0.5 -1.9 LysR family transcriptional regulator compare
PS417_23580 -0.5 -0.8 peptidylprolyl isomerase compare
PS417_02555 -0.5 -3.5 exoribonuclease R compare
PS417_20775 -0.5 -1.5 coproporphyrinogen III oxidase compare
PS417_01590 -0.5 -1.0 polysaccharide deacetylase compare
PS417_27800 -0.5 -0.7 exodeoxyribonuclease III compare
PS417_14245 -0.5 -1.1 hypothetical protein compare
PS417_27135 -0.5 -0.5 glutamine synthetase compare
PS417_00355 -0.5 -1.4 metal ABC transporter permease compare
PS417_17480 -0.5 -1.9 branched-chain amino acid ABC transporter substrate-binding protein compare
PS417_11055 -0.5 -1.8 AraC family transcriptional regulator compare
PS417_08565 -0.5 -3.0 peptide methionine sulfoxide reductase compare
PS417_03080 -0.5 -0.8 hypothetical protein compare
PS417_22260 -0.5 -1.8 segregation and condensation protein B compare
PS417_10455 -0.5 -1.5 membrane protein compare
PS417_06600 -0.5 -0.6 leucine/isoleucine/valine transporter ATP-binding subunit compare
PS417_06025 -0.5 -1.7 alpha/beta hydrolase compare
PS417_18820 -0.5 -3.5 methylmalonyl-CoA epimerase compare
PS417_25915 -0.5 -1.5 carbon-nitrogen hydrolase compare
PS417_13425 -0.5 -0.9 cupin compare
PS417_10715 -0.5 -1.2 Cro/Cl family transcriptional regulator compare
PS417_03380 -0.5 -0.9 hypothetical protein compare
PS417_10910 -0.5 -1.9 FAD-dependent oxidoreductase compare
PS417_03560 -0.5 -0.5 GTP-binding protein compare
PS417_02045 -0.5 -1.9 3-oxoacyl-ACP synthase compare
PS417_11110 -0.5 -2.2 xylose isomerase compare
PS417_14910 -0.5 -2.4 C4-dicarboxylate ABC transporter compare
PS417_00315 -0.5 -1.9 MFS transporter compare
PS417_15640 -0.5 -2.5 DNA methylase compare
PS417_04300 -0.5 -1.1 FagA protein compare
PS417_18915 -0.5 -1.7 hypothetical protein compare
PS417_21575 -0.5 -2.5 chemotaxis protein compare
PS417_18605 -0.5 -2.8 LysR family transcriptional regulator compare
PS417_14210 -0.5 -1.2 hypothetical protein compare
PS417_13235 -0.5 -3.0 siderophore biosynthesis protein compare
PS417_18265 -0.5 -1.4 AsnC family transcriptional regulator compare
PS417_15970 -0.5 -1.7 hypothetical protein compare
PS417_06200 -0.5 -2.4 protein-PII uridylyltransferase compare
PS417_17125 -0.5 -1.2 transcriptional regulator compare
PS417_14240 -0.5 -1.3 isochorismatase compare
PS417_14235 -0.5 -1.0 hypothetical protein compare
PS417_03310 -0.5 -1.8 carbonate dehydratase compare
PS417_00220 -0.5 -1.2 hypothetical protein compare
PS417_25985 -0.4 -1.2 dethiobiotin synthetase compare
PS417_26395 -0.4 -1.5 hypothetical protein compare
PS417_14590 -0.4 -1.0 LysR family transcriptional regulator compare
PS417_20045 -0.4 -2.8 threonine-phosphate decarboxylase compare
PS417_19910 -0.4 -2.4 aromatic amino acid aminotransferase compare
PS417_26580 -0.4 -2.1 malonate transporter compare
PS417_15160 -0.4 -1.2 hypothetical protein compare
PS417_24680 -0.4 -3.9 murein transglycosylase compare
PS417_11945 -0.4 -0.9 hypothetical protein compare
PS417_07275 -0.4 -1.4 5-carboxymethyl-2-hydroxymuconate isomerase compare
PS417_27425 -0.4 -2.9 exopolyphosphatase compare
PS417_17490 -0.4 -1.1 ABC transporter ATP-binding protein compare
PS417_09085 -0.4 -0.8 hypothetical protein compare
PS417_14045 -0.4 -1.6 alkyl hydroperoxide reductase compare
PS417_13300 -0.4 -2.5 short-chain dehydrogenase compare
PS417_05575 -0.4 -2.9 Glycerol kinase (EC 2.7.1.30) (from data) compare
PS417_18865 -0.4 -2.5 hypothetical protein compare
PS417_15975 -0.4 -1.0 glutamate carboxypeptidase compare
PS417_22115 -0.4 -1.5 transcriptional regulator compare
PS417_26645 -0.4 -1.4 chemotaxis protein compare
PS417_11965 -0.4 -1.3 GCN5 family acetyltransferase compare
PS417_17545 -0.4 -1.3 2-oxoisovalerate dehydrogenase compare
PS417_20070 -0.4 -1.7 hydrolase Nlp/P60 compare
PS417_27745 -0.4 -2.0 gamma-glutamyl-gamma-aminobutyraldehyde dehydrogenase (EC 1.2.1.99); 4-guanidinobutyraldehyde dehydrogenase (EC 1.2.1.54) (from data) compare
PS417_25390 -0.4 -1.7 MFS transporter compare
PS417_04015 -0.4 -1.6 choline ABC transporter permease compare
PS417_12530 -0.4 -1.9 LysR family transcriptional regulator compare
PS417_17650 -0.4 -1.4 proteinase compare
PS417_12920 -0.4 -2.2 endoribonuclease compare
PS417_11410 -0.4 -1.0 phospholipase compare
PS417_12855 -0.4 -1.9 3-phosphoshikimate 1-carboxyvinyltransferase compare
PS417_04170 -0.4 -2.0 stringent starvation protein A compare
PS417_13215 -0.4 -1.9 Triostin synthetase I compare
PS417_15445 -0.4 -1.9 ABC transporter permease compare
PS417_03915 -0.4 -1.8 tRNA-Thr compare
PS417_12945 -0.4 -2.0 sulfonate ABC transporter ATP-binding protein compare
PS417_06375 -0.4 -0.2 deoxycytidine triphosphate deaminase compare
PS417_24790 -0.4 -1.7 hypothetical protein compare
PS417_21220 -0.4 -1.3 acetyl-CoA acetyltransferase compare


Specific Phenotypes

None in this experiment

For Pseudomonas simiae WCS417 in lb experiments