Experiment set30S216 for Pseudomonas simiae WCS417

Compare to:

TSB 0.5x with 6-methoxy-2(3H)-benzoxazolone 2500 uM; timepoint 2

200 most important genes:

  gene name fitness t score description  
PS417_06245 -3.2 -2.8 zinc metallopeptidase RseP compare
PS417_28070 -2.5 -8.0 phosphate ABC transporter ATP-binding protein compare
PS417_23375 -2.4 -3.7 cytochrome C oxidase compare
PS417_28080 -2.2 -9.7 phosphate ABC transporter permease compare
PS417_23380 -2.0 -5.1 cytochrome o ubiquinol oxidase subunit III compare
PS417_23385 -2.0 -12.1 cytochrome o ubiquinol oxidase subunit I compare
PS417_27795 -2.0 -0.7 orotate phosphoribosyltransferase compare
PS417_00045 -1.9 -1.2 glycerol acyltransferase compare
PS417_23370 -1.9 -6.4 protoheme IX farnesyltransferase compare
PS417_23995 -1.7 -1.7 preprotein translocase subunit SecG compare
PS417_08090 -1.7 -1.4 3-oxoacyl-ACP reductase compare
PS417_20715 -1.6 -1.9 cytochrome Cbb3 compare
PS417_23390 -1.6 -8.8 ubiquinol oxidase subunit II compare
PS417_02280 -1.5 -1.9 GlcNAc-PI de-N-acetylase compare
PS417_26990 -1.2 -0.8 RNA pyrophosphohydrolase compare
PS417_28085 -1.2 -7.4 phosphate-binding protein compare
PS417_01285 -1.2 -1.9 haloacid dehalogenase compare
PS417_03560 -1.1 -1.5 GTP-binding protein compare
PS417_28075 -1.1 -4.2 phosphate ABC transporter permease compare
PS417_24460 -1.1 -3.4 hypothetical protein compare
PS417_27245 -1.0 -1.8 aminotransferase DegT compare
PS417_23160 -1.0 -1.5 50S rRNA methyltransferase compare
PS417_02555 -1.0 -6.0 exoribonuclease R compare
PS417_00385 -1.0 -1.2 Fur family transcriptional regulator compare
PS417_02485 -0.9 -1.7 tRNA delta(2)-isopentenylpyrophosphate transferase compare
PS417_15805 -0.9 -2.6 transporter compare
PS417_06680 -0.9 -3.8 nuclease PIN compare
PS417_11705 -0.9 -3.8 cyclic peptide transporter compare
PS417_23915 -0.9 -2.2 pantoate--beta-alanine ligase compare
PS417_27135 -0.9 -0.8 glutamine synthetase compare
PS417_01850 -0.9 -2.5 phosphoribosyl-ATP pyrophosphatase (EC 3.6.1.31) (from data) compare
PS417_02885 -0.9 -1.4 hypothetical protein compare
PS417_20785 -0.9 -1.0 transcriptional regulator compare
PS417_22690 -0.9 -3.9 phosphogluconate dehydratase compare
PS417_12695 -0.8 -3.3 mannitol dehydrogenase compare
PS417_01095 -0.8 -0.9 amino acid ABC transporter ATP-binding protein compare
PS417_01580 -0.8 -1.7 imidazole glycerol phosphate synthase compare
PS417_01915 -0.8 -0.3 ATP-dependent protease ATP-binding subunit HslU compare
PS417_07510 -0.8 -3.6 aspartyl beta-hydroxylase compare
PS417_25975 -0.8 -5.2 Acyl-CoA dehydrogenase (EC 1.3.8.7) (from data) compare
PS417_13755 -0.8 -2.9 oxidoreductase compare
PS417_02720 -0.8 -1.1 TetR family transcriptional regulator compare
PS417_06200 -0.8 -3.9 protein-PII uridylyltransferase compare
PS417_01855 -0.8 -2.1 phosphoribosyl-AMP cyclohydrolase compare
PS417_01605 -0.8 -1.0 phosphoglycerate mutase compare
PS417_01560 -0.8 -2.3 imidazoleglycerol-phosphate dehydratase compare
PS417_00650 -0.8 -0.9 LysR family transcriptional regulator compare
PS417_02255 -0.8 -2.2 lipopolysaccharide kinase compare
PS417_04420 -0.8 -5.4 histidinol dehydrogenase compare
PS417_17215 -0.7 -1.6 peptidylprolyl isomerase compare
PS417_09325 -0.7 -2.3 peptidase S41 compare
PS417_27425 -0.7 -3.4 exopolyphosphatase compare
PS417_06530 -0.7 -1.1 membrane protein compare
PS417_20855 -0.7 -0.7 hypothetical protein compare
PS417_08130 -0.7 -1.6 aspartate aminotransferase compare
PS417_00085 -0.7 -2.1 16S rRNA methyltransferase compare
PS417_06280 -0.7 -2.7 ribonuclease HII compare
PS417_08685 -0.7 -1.6 flagellar hook-length control protein FliK compare
PS417_22205 -0.7 -3.5 potassium transporter TrkH compare
PS417_24835 -0.6 -3.5 hypothetical protein compare
PS417_24290 -0.6 -2.9 hypothetical protein compare
PS417_02880 -0.6 -0.3 copper chaperone compare
PS417_08125 -0.6 -0.3 prephenate dehydratase compare
PS417_11930 -0.6 -3.3 hypothetical protein compare
PS417_09150 -0.6 -2.6 energy transducer TonB compare
PS417_01920 -0.6 -0.4 ATP-dependent protease subunit HslV compare
PS417_15800 -0.6 -3.7 photosynthetic protein synthase I compare
PS417_03380 -0.6 -1.0 hypothetical protein compare
PS417_15215 -0.6 -1.3 protein activator of alkane oxidation PraA compare
PS417_05695 -0.6 -3.2 transcriptional regulator compare
PS417_17645 -0.6 -1.5 RND transporter compare
PS417_13120 -0.6 -3.5 aspartyl beta-hydroxylase compare
PS417_11945 -0.6 -1.4 hypothetical protein compare
PS417_15200 -0.6 -2.2 protein activator of alkane oxidation PraB compare
PS417_21085 -0.6 -3.1 GntR family transcriptional regulator compare
PS417_08580 -0.6 -3.0 histidine kinase compare
PS417_07140 -0.6 -1.4 peptidase M48 compare
PS417_05475 -0.6 -2.0 arginase compare
PS417_22520 -0.6 -0.7 histidine kinase compare
PS417_10675 -0.6 -0.9 TetR family transcriptional regulator compare
PS417_28220 -0.6 -1.6 LysR family transcriptional regulator compare
PS417_15970 -0.6 -3.3 hypothetical protein compare
PS417_04380 -0.6 -0.3 ABC transporter permease compare
PS417_17685 -0.6 -1.1 allantoate amidohydrolase compare
PS417_01575 -0.6 -2.7 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (from data) compare
PS417_03260 -0.6 -0.6 5S ribosomal RNA compare
PS417_27295 -0.6 -3.2 hypothetical protein compare
PS417_16310 -0.6 -2.2 membrane protein compare
PS417_08990 -0.6 -2.3 ABC transporter substrate-binding protein compare
PS417_25295 -0.5 -2.3 hypothetical protein compare
PS417_24225 -0.5 -1.8 hypothetical protein compare
PS417_19605 -0.5 -1.2 hypothetical protein compare
PS417_23900 -0.5 -3.1 poly(A) polymerase compare
PS417_25390 -0.5 -2.2 MFS transporter compare
PS417_01620 -0.5 -1.6 preprotein translocase subunit SecB compare
PS417_10265 -0.5 -2.3 peptidase compare
PS417_00375 -0.5 -2.0 membrane protein compare
PS417_04390 -0.5 -1.5 toluene tolerance protein compare
PS417_19350 -0.5 -2.0 GTP cyclohydrolase compare
PS417_27690 -0.5 -1.7 XRE family transcriptional regulator compare
PS417_24620 -0.5 -1.2 hypothetical protein compare
PS417_06205 -0.5 -3.3 methionine aminopeptidase compare
PS417_16390 -0.5 -3.1 peroxiredoxin compare
PS417_20985 -0.5 -0.3 porin compare
PS417_20705 -0.5 -1.1 cbb3-type cytochrome c oxidase subunit II compare
PS417_12855 -0.5 -1.9 3-phosphoshikimate 1-carboxyvinyltransferase compare
PS417_02115 -0.5 -2.3 acyltransferase compare
PS417_15875 -0.5 -1.2 LuxR family transcriptional regulator compare
PS417_14110 -0.5 -2.6 2-nitropropane dioxygenase compare
PS417_05570 -0.5 -3.2 DeoR faimly transcriptional regulator compare
PS417_04650 -0.5 -0.4 D-alanine--D-alanine ligase compare
PS417_17190 -0.5 -2.2 MarR family transcriptional regulator compare
PS417_12740 -0.5 -1.9 secretion protein HlyD compare
PS417_05405 -0.5 -2.8 L-alanine and D-alanine permease (from data) compare
PS417_14915 -0.5 -1.8 host specificity protein compare
PS417_19305 -0.5 -2.0 acireductone dioxygenase compare
PS417_12785 -0.5 -2.5 hypothetical protein compare
PS417_19155 -0.5 -2.8 DSBA oxidoreductase compare
PS417_22780 -0.5 -2.6 XRE family transcriptional regulator compare
PS417_15390 -0.5 -1.4 hypothetical protein compare
PS417_13790 -0.5 -1.6 UDP phosphate 4-deoxy-4-formamido-L-arabinose transferase compare
PS417_25780 -0.5 -2.0 molecular chaperone DnaJ compare
PS417_02110 -0.5 -1.2 acyl carrier protein compare
PS417_26770 -0.5 -1.0 tRNA (guanine-N7)-methyltransferase compare
PS417_18205 -0.5 -1.5 aldehyde dehydrogenase compare
PS417_04375 -0.5 -0.7 ABC transporter ATP-binding protein compare
PS417_09160 -0.5 -1.2 GNAT family acetyltransferase compare
PS417_27875 -0.5 -2.3 histidine kinase compare
PS417_13290 -0.5 -1.9 AraC family transcriptional regulator compare
PS417_20775 -0.4 -1.4 coproporphyrinogen III oxidase compare
PS417_25905 -0.4 -1.4 AsnC family transcriptional regulator compare
PS417_09085 -0.4 -0.8 hypothetical protein compare
PS417_18040 -0.4 -1.2 general secretion pathway protein GspN compare
PS417_21270 -0.4 -1.1 translation initiation factor 2 compare
PS417_26480 -0.4 -2.3 membrane protein compare
PS417_15745 -0.4 -1.4 lipid carrier protein compare
PS417_06825 -0.4 -2.2 hypothetical protein compare
PS417_07440 -0.4 -1.4 cyclic nucleotide-binding protein compare
PS417_00180 -0.4 -0.9 tryptophan synthase subunit alpha compare
PS417_04340 -0.4 -2.0 ribosome hibernation promoting factor HPF compare
PS417_21430 -0.4 -0.6 3-oxoacyl-ACP synthase compare
PS417_18425 -0.4 -1.0 sporulation protein compare
PS417_15210 -0.4 -1.8 protein activator of alkane oxidation PraB compare
PS417_00390 -0.4 -2.4 ABC transporter substrate-binding protein compare
PS417_19835 -0.4 -0.8 flagellar biosynthesis protein FliS compare
PS417_22825 -0.4 -2.7 hypothetical protein compare
PS417_18370 -0.4 -0.9 hypothetical protein compare
PS417_23250 -0.4 -2.0 S-adenosylmethionine tRNA ribosyltransferase compare
PS417_27705 -0.4 -1.0 amino acid dehydrogenase compare
PS417_14805 -0.4 -1.4 AraC family transcriptional regulator compare
PS417_00380 -0.4 -0.7 zinc ABC transporter ATP-binding protein compare
PS417_12140 -0.4 -3.0 histidine kinase compare
PS417_08135 -0.4 -0.9 3-phosphoshikimate 1-carboxyvinyltransferase compare
PS417_27865 -0.4 -1.1 LysR family transcriptional regulator compare
PS417_06875 -0.4 -2.1 iron dicitrate transport regulator FecR compare
PS417_18010 -0.4 -2.0 acid phosphatase compare
PS417_05830 -0.4 -1.4 hypothetical protein compare
PS417_28280 -0.4 -2.3 hypothetical protein compare
PS417_03995 -0.4 -1.7 Fe(II)-dependent oxygenase compare
PS417_13805 -0.4 -3.2 4-amino-4-deoxy-L-arabinose transferase compare
PS417_16105 -0.4 -2.1 LysR family transcriptional regulator compare
PS417_12390 -0.4 -1.3 hypothetical protein compare
PS417_06355 -0.4 -1.4 protein-L-isoaspartate O-methyltransferase compare
PS417_13105 -0.4 -2.6 MFS transporter compare
PS417_13870 -0.4 -2.0 hypothetical protein compare
PS417_02695 -0.4 -1.0 protein hupE compare
PS417_21625 -0.4 -0.7 DNA-binding protein compare
PS417_02820 -0.4 -1.5 urea ABC transporter ATP-binding protein compare
PS417_02360 -0.4 -1.5 nitrate reductase compare
PS417_11830 -0.4 -1.0 membrane protein compare
PS417_23770 -0.4 -0.6 exodeoxyribonuclease V subunit alpha compare
PS417_03800 -0.4 -1.5 pilus assembly protein compare
PS417_27070 -0.4 -3.1 alpha/beta hydrolase compare
PS417_19705 -0.4 -1.4 flagellar biosynthesis regulator FlhF compare
PS417_28440 -0.4 -1.5 hypothetical protein compare
PS417_13010 -0.4 -1.3 alpha/beta hydrolase compare
PS417_00825 -0.4 -1.2 recombinase RecF compare
PS417_00345 -0.4 -0.8 copper-binding protein compare
PS417_07770 -0.4 -1.1 hypothetical protein compare
PS417_04315 -0.4 -2.3 superoxide dismutase compare
PS417_05100 -0.4 -1.1 RNA polymerase sigma factor compare
PS417_15085 -0.4 -1.6 ATPase AAA compare
PS417_20520 -0.4 -1.6 3-phosphoglycerate kinase compare
PS417_05825 -0.4 -1.4 cytochrome D ubiquinol oxidase subunit II compare
PS417_26615 -0.4 -1.7 triphosphoribosyl-dephospho-CoA synthase compare
PS417_13820 -0.4 -2.6 UDP-glucose 6-dehydrogenase compare
PS417_25270 -0.4 -1.0 NrdR family transcriptional regulator compare
PS417_19135 -0.4 -1.5 DeoR faimly transcriptional regulator compare
PS417_02745 -0.4 -1.2 FMN-dependent NADH-azoreductase compare
PS417_02805 -0.4 -0.8 urease subunit gamma compare
PS417_19450 -0.4 -2.5 Patatin compare
PS417_27250 -0.4 -2.9 glycine cleavage system protein H compare
PS417_26640 -0.4 -2.4 hypothetical protein compare
PS417_17595 -0.4 -1.8 amino acid ABC transporter permease compare
PS417_22855 -0.4 -1.6 ssDNA exonuclease RecJ compare
PS417_26835 -0.4 -1.4 3-mercaptopyruvate sulfurtransferase compare
PS417_02210 -0.4 -2.4 diguanylate cyclase compare
PS417_00315 -0.4 -1.4 MFS transporter compare
PS417_07465 -0.4 -1.6 LysR family transcriptional regulator compare
PS417_26995 -0.4 -2.6 phosphoserine phosphatase compare


Specific Phenotypes

None in this experiment

For Pseudomonas simiae WCS417 in stress experiments

For stress 6-methoxy-2(3H)-benzoxazolone across organisms