Experiment set30S215 for Pseudomonas simiae WCS417

Compare to:

TSB 0.5x with 6-methoxy-2(3H)-benzoxazolone 1250 uM; timepoint 2

200 most important genes:

  gene name fitness t score description  
PS417_20715 -2.2 -2.1 cytochrome Cbb3 compare
PS417_23370 -2.1 -8.2 protoheme IX farnesyltransferase compare
PS417_27795 -2.0 -0.7 orotate phosphoribosyltransferase compare
PS417_23380 -1.8 -5.4 cytochrome o ubiquinol oxidase subunit III compare
PS417_18310 -1.7 -1.0 hypothetical protein compare
PS417_23385 -1.6 -11.4 cytochrome o ubiquinol oxidase subunit I compare
PS417_16555 -1.5 -2.3 cupin compare
PS417_22565 -1.5 -0.8 formyltetrahydrofolate deformylase compare
PS417_08540 -1.5 -3.4 RNA helicase compare
PS417_26990 -1.5 -1.0 RNA pyrophosphohydrolase compare
PS417_23390 -1.5 -10.2 ubiquinol oxidase subunit II compare
PS417_28070 -1.4 -5.6 phosphate ABC transporter ATP-binding protein compare
PS417_06685 -1.3 -1.5 beta-ketoadipyl CoA thiolase compare
PS417_18425 -1.3 -2.6 sporulation protein compare
PS417_20775 -1.3 -2.8 coproporphyrinogen III oxidase compare
PS417_06680 -1.3 -4.7 nuclease PIN compare
PS417_23375 -1.3 -3.5 cytochrome C oxidase compare
PS417_27195 -1.2 -1.9 N-acetylglutamate synthase compare
PS417_23770 -1.2 -1.5 exodeoxyribonuclease V subunit alpha compare
PS417_04650 -1.1 -0.7 D-alanine--D-alanine ligase compare
PS417_22520 -1.0 -1.5 histidine kinase compare
PS417_07620 -1.0 -1.0 beta-hexosaminidase compare
PS417_23995 -1.0 -1.3 preprotein translocase subunit SecG compare
PS417_21480 -0.9 -1.4 23S rRNA pseudouridylate synthase compare
PS417_18165 -0.9 -2.6 membrane protein compare
PS417_11400 -0.9 -1.1 phosphoglycerate mutase compare
PS417_02555 -0.9 -6.0 exoribonuclease R compare
PS417_21430 -0.9 -1.3 3-oxoacyl-ACP synthase compare
PS417_17610 -0.9 -1.3 AsnC family transcriptional regulator compare
PS417_06200 -0.9 -3.6 protein-PII uridylyltransferase compare
PS417_03260 -0.9 -1.0 5S ribosomal RNA compare
PS417_22795 -0.9 -1.8 exclusion suppressor FxsA compare
PS417_00385 -0.8 -1.2 Fur family transcriptional regulator compare
PS417_28080 -0.8 -6.4 phosphate ABC transporter permease compare
PS417_27585 -0.8 -1.6 diaminopimelate epimerase compare
PS417_00180 -0.8 -1.6 tryptophan synthase subunit alpha compare
PS417_01850 -0.8 -3.1 phosphoribosyl-ATP pyrophosphatase (EC 3.6.1.31) (from data) compare
PS417_27245 -0.8 -2.2 aminotransferase DegT compare
PS417_01565 -0.8 -5.1 imidazole glycerol phosphate synthase compare
PS417_27425 -0.8 -4.7 exopolyphosphatase compare
PS417_08135 -0.8 -2.1 3-phosphoshikimate 1-carboxyvinyltransferase compare
PS417_02885 -0.8 -1.3 hypothetical protein compare
PS417_12695 -0.7 -4.1 mannitol dehydrogenase compare
PS417_04390 -0.7 -1.4 toluene tolerance protein compare
PS417_24615 -0.7 -0.5 hypothetical protein compare
PS417_00045 -0.7 -0.7 glycerol acyltransferase compare
PS417_24500 -0.7 -2.4 DEAD/DEAH box helicase compare
PS417_13755 -0.7 -1.7 oxidoreductase compare
PS417_01560 -0.7 -2.3 imidazoleglycerol-phosphate dehydratase compare
PS417_00380 -0.7 -3.2 zinc ABC transporter ATP-binding protein compare
PS417_01855 -0.7 -1.9 phosphoribosyl-AMP cyclohydrolase compare
PS417_26835 -0.7 -2.6 3-mercaptopyruvate sulfurtransferase compare
PS417_05695 -0.7 -2.9 transcriptional regulator compare
PS417_02880 -0.7 -0.3 copper chaperone compare
PS417_03100 -0.7 -1.1 pilus assembly protein compare
PS417_17070 -0.7 -1.8 RNA polymerase subunit sigma-24 compare
PS417_22990 -0.7 -1.7 iron dicitrate transport regulator FecR compare
PS417_02485 -0.7 -1.3 tRNA delta(2)-isopentenylpyrophosphate transferase compare
PS417_15390 -0.7 -3.2 hypothetical protein compare
PS417_19955 -0.7 -1.5 hypothetical protein compare
PS417_09150 -0.7 -2.1 energy transducer TonB compare
PS417_04420 -0.7 -4.9 histidinol dehydrogenase compare
PS417_02975 -0.6 -3.2 3-dehydroquinate dehydratase compare
PS417_12855 -0.6 -2.8 3-phosphoshikimate 1-carboxyvinyltransferase compare
PS417_15805 -0.6 -2.0 transporter compare
PS417_04380 -0.6 -0.4 ABC transporter permease compare
PS417_06095 -0.6 -1.6 energy transducer TonB compare
PS417_15800 -0.6 -3.9 photosynthetic protein synthase I compare
PS417_14065 -0.6 -3.8 UTP--glucose-1-phosphate uridylyltransferase compare
PS417_05815 -0.6 -2.2 recombinase RecA compare
PS417_21630 -0.6 -0.9 magnesium transporter compare
PS417_16845 -0.6 -2.3 monovalent cation/H+ antiporter subunit E compare
PS417_27140 -0.6 -2.0 Gamma-glutamyl-putrescine synthetase (EC 6.3.1.11) (from data) compare
PS417_22015 -0.6 -1.4 hypothetical protein compare
PS417_04050 -0.6 -1.2 peptide ABC transporter ATP-binding protein compare
PS417_02805 -0.6 -1.2 urease subunit gamma compare
PS417_13790 -0.6 -3.1 UDP phosphate 4-deoxy-4-formamido-L-arabinose transferase compare
PS417_04180 -0.6 -1.5 GntR family transcriptional regulator compare
PS417_26850 -0.6 -0.9 twin-arginine translocation pathway signal protein compare
PS417_13820 -0.6 -3.6 UDP-glucose 6-dehydrogenase compare
PS417_01575 -0.6 -2.5 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (from data) compare
PS417_19755 -0.6 -1.5 flagellar motor switch protein FliM compare
PS417_08580 -0.6 -2.8 histidine kinase compare
PS417_08360 -0.6 -1.4 DoxX family protein compare
PS417_22690 -0.6 -1.3 phosphogluconate dehydratase compare
PS417_03560 -0.5 -0.8 GTP-binding protein compare
PS417_17630 -0.5 -2.0 RNA polymerase sigma factor compare
PS417_28220 -0.5 -2.2 LysR family transcriptional regulator compare
PS417_03935 -0.5 -2.1 N-acetyl-anhydromuranmyl-L-alanine amidase compare
PS417_05975 -0.5 -0.5 chemotaxis protein CheW compare
PS417_23160 -0.5 -2.2 50S rRNA methyltransferase compare
PS417_14590 -0.5 -1.2 LysR family transcriptional regulator compare
PS417_13805 -0.5 -3.6 4-amino-4-deoxy-L-arabinose transferase compare
PS417_17840 -0.5 -1.8 betaine-aldehyde dehydrogenase compare
PS417_09740 -0.5 -1.9 RNA polymerase subunit sigma-24 compare
PS417_22815 -0.5 -2.3 permease compare
PS417_24155 -0.5 -0.7 ATP-binding protein compare
PS417_28230 -0.5 -2.1 transcriptional regulator compare
PS417_18070 -0.5 -1.0 general secretion pathway protein GspH compare
PS417_23105 -0.5 -0.7 hypothetical protein compare
PS417_00350 -0.5 -2.3 methionine ABC transporter substrate-binding protein compare
PS417_18780 -0.5 -1.3 flavin reductase compare
PS417_15085 -0.5 -1.5 ATPase AAA compare
PS417_20785 -0.5 -0.6 transcriptional regulator compare
PS417_21285 -0.5 -1.3 hypothetical protein compare
PS417_27815 -0.5 -1.2 hypothetical protein compare
PS417_20880 -0.5 -1.5 GntR family transcriptional regulator compare
PS417_28075 -0.5 -3.3 phosphate ABC transporter permease compare
PS417_09160 -0.5 -1.6 GNAT family acetyltransferase compare
PS417_20720 -0.5 -2.3 cbb3-type cytochrome c oxidase subunit I compare
PS417_21625 -0.5 -0.9 DNA-binding protein compare
PS417_04415 -0.5 -3.2 ATP phosphoribosyltransferase (EC 2.4.2.17) (from data) compare
PS417_02510 -0.5 -1.7 ATP phosphoribosyltransferase regulatory subunit compare
PS417_06075 -0.5 -1.1 hypothetical protein compare
PS417_11705 -0.5 -2.1 cyclic peptide transporter compare
PS417_08310 -0.5 -2.2 alpha/beta hydrolase compare
PS417_11375 -0.5 -2.1 hypothetical protein compare
PS417_23900 -0.5 -2.7 poly(A) polymerase compare
PS417_00375 -0.4 -1.8 membrane protein compare
PS417_07510 -0.4 -2.6 aspartyl beta-hydroxylase compare
PS417_08840 -0.4 -3.0 serine/threonine protein kinase compare
PS417_07815 -0.4 -2.4 hypothetical protein compare
PS417_12535 -0.4 -1.4 nitrilase compare
PS417_05500 -0.4 -1.0 2,3-diketo-5-methylthio-1-phosphopentane phosphatase compare
PS417_12355 -0.4 -1.3 magnesium chelatase compare
PS417_13795 -0.4 -3.2 UDP-4-amino-4-deoxy-L-arabinose formyltransferase compare
PS417_00080 -0.4 -3.2 potassium transporter peripheral membrane component compare
PS417_06770 -0.4 -1.8 multidrug transporter compare
PS417_21680 -0.4 -3.2 succinylglutamate desuccinylase compare
PS417_04270 -0.4 -2.8 ribonuclease G compare
PS417_09235 -0.4 -0.8 molecular chaperone compare
PS417_06895 -0.4 -1.3 DNA-binding protein compare
PS417_08730 -0.4 -1.1 cytochrome C compare
PS417_03625 -0.4 -2.4 lipid A 3-O-deacylase compare
PS417_06245 -0.4 -0.7 zinc metallopeptidase RseP compare
PS417_27340 -0.4 -1.6 NADPH:quinone oxidoreductase compare
PS417_20700 -0.4 -2.3 cbb3-type cytochrome c oxidase subunit I compare
PS417_14515 -0.4 -1.1 acetylglucosaminylphosphatidylinositol deacetylase compare
PS417_05210 -0.4 -2.4 copper oxidase compare
PS417_23360 -0.4 -0.8 hypothetical protein compare
PS417_06350 -0.4 -3.1 stationary phase survival protein SurE compare
PS417_02990 -0.4 -1.3 hypothetical protein compare
PS417_22825 -0.4 -2.7 hypothetical protein compare
PS417_27360 -0.4 -1.9 CDP-6-deoxy-delta-3,4-glucoseen reductase compare
PS417_15285 -0.4 -0.8 type VI secretion protein compare
PS417_15675 -0.4 -2.6 chemotaxis protein compare
PS417_20705 -0.4 -0.9 cbb3-type cytochrome c oxidase subunit II compare
PS417_15775 -0.4 -1.4 short-chain dehydrogenase compare
PS417_18105 -0.4 -0.8 iron-dicitrate transporter substrate-binding subunit compare
PS417_15090 -0.4 -1.1 hypothetical protein compare
PS417_08105 -0.4 -3.4 N-ethylammeline chlorohydrolase compare
PS417_05535 -0.4 -1.1 Fis family transcriptional regulator compare
PS417_08685 -0.4 -0.9 flagellar hook-length control protein FliK compare
PS417_23170 -0.4 -1.1 FeS assembly protein IscX compare
PS417_07695 -0.4 -2.0 NADPH-dependent 7-cyano-7-deazaguanine reductase compare
PS417_12585 -0.4 -2.4 acriflavine resistance protein B compare
PS417_12140 -0.4 -2.2 histidine kinase compare
PS417_17545 -0.4 -1.6 2-oxoisovalerate dehydrogenase compare
PS417_26295 -0.4 -1.4 gamma-butyrobetaine dioxygenase compare
PS417_26985 -0.4 -2.3 phosphoenolpyruvate-protein phosphotransferase compare
PS417_11180 -0.4 -1.7 TetR family transcriptional regulator compare
PS417_21830 -0.4 -1.0 TetR family transcriptional regulator compare
PS417_17495 -0.4 -2.4 multidrug ABC transporter permease compare
PS417_09805 -0.4 -1.8 CdaR family transcriptional regulator compare
PS417_02695 -0.4 -1.1 protein hupE compare
PS417_22205 -0.4 -2.5 potassium transporter TrkH compare
PS417_02280 -0.4 -0.7 GlcNAc-PI de-N-acetylase compare
PS417_27875 -0.4 -2.6 histidine kinase compare
PS417_02075 -0.4 -2.1 thioesterase compare
PS417_09325 -0.4 -1.2 peptidase S41 compare
PS417_06635 -0.4 -0.9 ferredoxin compare
PS417_01435 -0.4 -0.8 hypothetical protein compare
PS417_04410 -0.4 -1.2 hypothetical protein compare
PS417_00160 -0.4 -1.2 2-dehydro-3-deoxy-6-phosphogalactonate aldolase compare
PS417_23915 -0.4 -1.3 pantoate--beta-alanine ligase compare
PS417_21315 -0.4 -2.4 hydroxyacid dehydrogenase compare
PS417_25710 -0.4 -0.7 indole-3-glycerol-phosphate synthase compare
PS417_13050 -0.4 -1.3 N-acetylglucosamine-6-sulfatase compare
PS417_11055 -0.4 -1.4 AraC family transcriptional regulator compare
PS417_26770 -0.4 -1.1 tRNA (guanine-N7)-methyltransferase compare
PS417_05085 -0.4 -2.4 ribosomal subunit interface protein compare
PS417_27705 -0.4 -1.0 amino acid dehydrogenase compare
PS417_24370 -0.4 -0.6 (2Fe-2S)-binding protein compare
PS417_22300 -0.4 -0.9 LTXXQ domain protein compare
PS417_24790 -0.4 -2.0 hypothetical protein compare
PS417_18800 -0.4 -1.3 hypothetical protein compare
PS417_05140 -0.4 -1.2 dipicolinate synthase compare
PS417_07840 -0.4 -1.3 hypothetical protein compare
PS417_11000 -0.3 -1.7 L-arabonate dehydratase (EC 4.2.1.25) (from data) compare
PS417_05735 -0.3 -1.1 tail fiber protein compare
PS417_17645 -0.3 -1.0 RND transporter compare
PS417_12540 -0.3 -0.9 hypothetical protein compare
PS417_26255 -0.3 -2.1 hypothetical protein compare
PS417_24225 -0.3 -0.9 hypothetical protein compare
PS417_12400 -0.3 -1.8 oxidoreductase compare
PS417_18055 -0.3 -0.5 general secretion pathway protein GspK compare
PS417_16045 -0.3 -1.6 acyl-CoA dehydrogenase compare
PS417_27295 -0.3 -1.9 hypothetical protein compare
PS417_02725 -0.3 -1.1 hypothetical protein compare
PS417_02055 -0.3 -1.6 methyltransferase compare


Specific Phenotypes

None in this experiment

For Pseudomonas simiae WCS417 in stress experiments

For stress 6-methoxy-2(3H)-benzoxazolone across organisms