Experiment set30S214 for Pseudomonas simiae WCS417

Compare to:

TSB 0.5x with 6-methoxy-2(3H)-benzoxazolone 1250 uM; timepoint 2

200 most important genes:

  gene name fitness t score description  
PS417_21430 -2.6 -2.8 3-oxoacyl-ACP synthase compare
PS417_08125 -2.5 -0.7 prephenate dehydratase compare
PS417_28070 -2.4 -11.5 phosphate ABC transporter ATP-binding protein compare
PS417_00045 -2.3 -1.2 glycerol acyltransferase compare
PS417_27795 -2.1 -0.6 orotate phosphoribosyltransferase compare
PS417_23375 -2.0 -3.7 cytochrome C oxidase compare
PS417_23370 -2.0 -7.2 protoheme IX farnesyltransferase compare
PS417_22520 -1.9 -1.9 histidine kinase compare
PS417_23380 -1.9 -4.5 cytochrome o ubiquinol oxidase subunit III compare
PS417_18310 -1.8 -0.9 hypothetical protein compare
PS417_23390 -1.7 -10.7 ubiquinol oxidase subunit II compare
PS417_23385 -1.7 -9.2 cytochrome o ubiquinol oxidase subunit I compare
PS417_20715 -1.6 -1.9 cytochrome Cbb3 compare
PS417_28080 -1.5 -9.4 phosphate ABC transporter permease compare
PS417_27245 -1.4 -3.6 aminotransferase DegT compare
PS417_02555 -1.2 -7.9 exoribonuclease R compare
PS417_01850 -1.2 -3.5 phosphoribosyl-ATP pyrophosphatase (EC 3.6.1.31) (from data) compare
PS417_06680 -1.2 -4.9 nuclease PIN compare
PS417_02485 -1.2 -2.3 tRNA delta(2)-isopentenylpyrophosphate transferase compare
PS417_19605 -1.1 -2.0 hypothetical protein compare
PS417_23995 -1.1 -1.2 preprotein translocase subunit SecG compare
PS417_14980 -1.0 -1.4 universal stress protein UspA compare
PS417_19835 -1.0 -1.5 flagellar biosynthesis protein FliS compare
PS417_23900 -1.0 -6.1 poly(A) polymerase compare
PS417_13795 -1.0 -3.9 UDP-4-amino-4-deoxy-L-arabinose formyltransferase compare
PS417_22565 -1.0 -0.5 formyltetrahydrofolate deformylase compare
PS417_28075 -1.0 -4.5 phosphate ABC transporter permease compare
PS417_22690 -1.0 -2.8 phosphogluconate dehydratase compare
PS417_06200 -1.0 -5.0 protein-PII uridylyltransferase compare
PS417_14065 -0.9 -5.9 UTP--glucose-1-phosphate uridylyltransferase compare
PS417_09470 -0.9 -1.4 hypothetical protein compare
PS417_01580 -0.9 -1.7 imidazole glycerol phosphate synthase compare
PS417_08155 -0.9 -1.1 integration host factor subunit beta compare
PS417_23915 -0.9 -2.9 pantoate--beta-alanine ligase compare
PS417_23545 -0.9 -2.0 gamma-glutamyl kinase compare
PS417_16400 -0.8 -2.4 NAD(P)H-quinone oxidoreductase compare
PS417_05695 -0.8 -4.0 transcriptional regulator compare
PS417_01620 -0.8 -1.2 preprotein translocase subunit SecB compare
PS417_02280 -0.8 -1.1 GlcNAc-PI de-N-acetylase compare
PS417_19805 -0.8 -3.4 flagellar M-ring protein FliF compare
PS417_15805 -0.8 -2.2 transporter compare
PS417_20775 -0.8 -2.2 coproporphyrinogen III oxidase compare
PS417_00385 -0.8 -1.0 Fur family transcriptional regulator compare
PS417_28085 -0.8 -6.0 phosphate-binding protein compare
PS417_12855 -0.7 -2.6 3-phosphoshikimate 1-carboxyvinyltransferase compare
PS417_14590 -0.7 -1.7 LysR family transcriptional regulator compare
PS417_13820 -0.7 -3.7 UDP-glucose 6-dehydrogenase compare
PS417_04420 -0.7 -5.3 histidinol dehydrogenase compare
PS417_02880 -0.7 -0.3 copper chaperone compare
PS417_12695 -0.7 -2.4 mannitol dehydrogenase compare
PS417_25650 -0.7 -1.7 anhydro-N-acetylmuramic acid kinase compare
PS417_09915 -0.7 -1.6 hypothetical protein compare
PS417_04705 -0.7 -1.8 hypothetical protein compare
PS417_10145 -0.7 -2.5 hypothetical protein compare
PS417_04270 -0.7 -4.6 ribonuclease G compare
PS417_27295 -0.7 -3.0 hypothetical protein compare
PS417_04375 -0.7 -1.1 ABC transporter ATP-binding protein compare
PS417_04380 -0.7 -0.3 ABC transporter permease compare
PS417_13790 -0.7 -4.6 UDP phosphate 4-deoxy-4-formamido-L-arabinose transferase compare
PS417_02990 -0.7 -2.1 hypothetical protein compare
PS417_01575 -0.7 -3.9 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (from data) compare
PS417_05815 -0.7 -3.6 recombinase RecA compare
PS417_27705 -0.7 -1.5 amino acid dehydrogenase compare
PS417_19450 -0.7 -3.8 Patatin compare
PS417_22825 -0.7 -3.0 hypothetical protein compare
PS417_23770 -0.7 -1.0 exodeoxyribonuclease V subunit alpha compare
PS417_21625 -0.7 -1.0 DNA-binding protein compare
PS417_13805 -0.7 -4.7 4-amino-4-deoxy-L-arabinose transferase compare
PS417_06685 -0.7 -0.8 beta-ketoadipyl CoA thiolase compare
PS417_02805 -0.6 -1.3 urease subunit gamma compare
PS417_19505 -0.6 -1.5 2,4-diaminobutyrate 4-aminotransferase compare
PS417_17755 -0.6 -1.5 hypothetical protein compare
PS417_15325 -0.6 -1.0 type VI secretion protein compare
PS417_11880 -0.6 -2.7 oxidoreductase compare
PS417_26605 -0.6 -1.1 malonate decarboxylase subunit beta compare
PS417_08135 -0.6 -1.5 3-phosphoshikimate 1-carboxyvinyltransferase compare
PS417_07710 -0.6 -1.4 membrane protein compare
PS417_01030 -0.6 -1.5 glutamine ABC transporter substrate-binding protein compare
PS417_02630 -0.6 -1.7 NAD synthetase compare
PS417_23580 -0.6 -0.6 peptidylprolyl isomerase compare
PS417_07870 -0.6 -1.5 hypothetical protein compare
PS417_05140 -0.6 -1.7 dipicolinate synthase compare
PS417_25975 -0.6 -4.2 Acyl-CoA dehydrogenase (EC 1.3.8.7) (from data) compare
PS417_15065 -0.6 -1.0 GntR family transcriptional regulator compare
PS417_06850 -0.6 -1.2 methanol dehydrogenase compare
PS417_15800 -0.6 -3.8 photosynthetic protein synthase I compare
PS417_17000 -0.6 -2.4 MerR family transcriptional regulator compare
PS417_17610 -0.6 -1.2 AsnC family transcriptional regulator compare
PS417_10810 -0.6 -1.3 hypothetical protein compare
PS417_18780 -0.6 -1.1 flavin reductase compare
PS417_27585 -0.6 -1.1 diaminopimelate epimerase compare
PS417_09150 -0.6 -2.1 energy transducer TonB compare
PS417_17190 -0.6 -2.9 MarR family transcriptional regulator compare
PS417_00445 -0.6 -3.4 histidine kinase compare
PS417_19755 -0.6 -1.4 flagellar motor switch protein FliM compare
PS417_21745 -0.6 -4.4 ABC transporter for L-Arginine, substrate-binding component (from data) compare
PS417_06455 -0.6 -2.5 Fe(II)-dependent oxygenase compare
PS417_23950 -0.6 -0.8 polynucleotide phosphorylase/polyadenylase compare
PS417_13455 -0.6 -2.1 alkaline proteinase inhibitor compare
PS417_02510 -0.6 -3.3 ATP phosphoribosyltransferase regulatory subunit compare
PS417_01285 -0.6 -1.4 haloacid dehalogenase compare
PS417_18450 -0.6 -2.3 hydrolase compare
PS417_26770 -0.6 -1.4 tRNA (guanine-N7)-methyltransferase compare
PS417_15975 -0.6 -1.5 glutamate carboxypeptidase compare
PS417_15215 -0.6 -1.3 protein activator of alkane oxidation PraA compare
PS417_19800 -0.5 -2.2 flagellar motor switch protein FliG compare
PS417_20785 -0.5 -0.7 transcriptional regulator compare
PS417_15090 -0.5 -1.6 hypothetical protein compare
PS417_13140 -0.5 -1.2 oxidoreductase compare
PS417_21575 -0.5 -2.4 chemotaxis protein compare
PS417_22060 -0.5 -1.1 hypothetical protein compare
PS417_06730 -0.5 -1.0 3-carboxy-cis,cis-muconate cycloisomerase compare
PS417_24800 -0.5 -2.4 UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase compare
PS417_17645 -0.5 -1.4 RND transporter compare
PS417_05475 -0.5 -1.5 arginase compare
PS417_15160 -0.5 -1.4 hypothetical protein compare
PS417_16555 -0.5 -0.8 cupin compare
PS417_15135 -0.5 -1.0 hypothetical protein compare
PS417_09325 -0.5 -1.7 peptidase S41 compare
PS417_17680 -0.5 -1.4 ABC transporter compare
PS417_28230 -0.5 -2.0 transcriptional regulator compare
PS417_06280 -0.5 -1.8 ribonuclease HII compare
PS417_00510 -0.5 -0.9 membrane protein compare
PS417_15390 -0.5 -1.4 hypothetical protein compare
PS417_27940 -0.5 -0.9 type VI secretion protein compare
PS417_16320 -0.5 -1.3 protein tyrosine phosphatase compare
PS417_08580 -0.5 -2.4 histidine kinase compare
PS417_08540 -0.5 -1.3 RNA helicase compare
PS417_14940 -0.5 -1.2 LysR family transcriptional regulator compare
PS417_17605 -0.5 -3.2 amino acid transporter compare
PS417_27595 -0.5 -1.2 recombinase XerC compare
PS417_17855 -0.5 -1.8 major facilitator transporter compare
PS417_16845 -0.5 -2.1 monovalent cation/H+ antiporter subunit E compare
PS417_02740 -0.5 -1.6 LysR family transcriptional regulator compare
PS417_27250 -0.5 -3.4 glycine cleavage system protein H compare
PS417_03625 -0.5 -2.5 lipid A 3-O-deacylase compare
PS417_02885 -0.5 -0.8 hypothetical protein compare
PS417_07700 -0.5 -1.5 chromosome partitioning protein ParA compare
PS417_06330 -0.5 -2.6 S-(hydroxymethyl)glutathione dehydrogenase compare
PS417_14995 -0.5 -2.7 serine/threonine protein kinase compare
PS417_25790 -0.5 -1.4 aminoglycoside phosphotransferase compare
PS417_20705 -0.4 -1.0 cbb3-type cytochrome c oxidase subunit II compare
PS417_19425 -0.4 -0.7 allantoicase compare
PS417_21740 -0.4 -2.4 ABC transporter for L-Arginine, permease component 1 (from data) compare
PS417_01955 -0.4 -3.1 peptidase compare
PS417_17200 -0.4 -2.2 hypothetical protein compare
PS417_13120 -0.4 -2.8 aspartyl beta-hydroxylase compare
PS417_19520 -0.4 -1.0 transcriptional regulator compare
PS417_23100 -0.4 -1.9 peptidase M23 compare
PS417_00220 -0.4 -1.2 hypothetical protein compare
PS417_13165 -0.4 -1.3 peroxidase compare
PS417_03045 -0.4 -1.2 hypothetical protein compare
PS417_01305 -0.4 -2.2 Fis family transcriptional regulator compare
PS417_08380 -0.4 -2.4 ABC transporter ATP-binding protein compare
PS417_02780 -0.4 -2.2 DNA-binding protein compare
PS417_27710 -0.4 -2.9 AsnC family transcriptional regulator compare
PS417_26985 -0.4 -2.0 phosphoenolpyruvate-protein phosphotransferase compare
PS417_10125 -0.4 -2.2 hypothetical protein compare
PS417_13425 -0.4 -1.3 cupin compare
PS417_10665 -0.4 -1.2 hypothetical protein compare
PS417_16870 -0.4 -1.7 short-chain dehydrogenase compare
PS417_21735 -0.4 -3.1 ABC transporter for L-Arginine, permease component 2 (from data) compare
PS417_27070 -0.4 -2.9 alpha/beta hydrolase compare
PS417_07845 -0.4 -1.3 transcriptional regulator compare
PS417_11540 -0.4 -2.3 NAD synthetase compare
PS417_04180 -0.4 -1.4 GntR family transcriptional regulator compare
PS417_09925 -0.4 -1.5 hypothetical protein compare
PS417_20700 -0.4 -2.6 cbb3-type cytochrome c oxidase subunit I compare
PS417_04410 -0.4 -1.5 hypothetical protein compare
PS417_04915 -0.4 -1.0 glutamine ABC transporter ATP-binding protein compare
PS417_05635 -0.4 -2.5 membrane protein compare
PS417_17630 -0.4 -1.4 RNA polymerase sigma factor compare
PS417_26835 -0.4 -1.9 3-mercaptopyruvate sulfurtransferase compare
PS417_12135 -0.4 -1.6 peptidylprolyl isomerase compare
PS417_00080 -0.4 -2.8 potassium transporter peripheral membrane component compare
PS417_21725 -0.4 -1.9 amino acid transporter compare
PS417_06775 -0.4 -1.4 antibiotic transporter compare
PS417_05555 -0.4 -1.7 amino acid ABC transporter permease compare
PS417_22815 -0.4 -1.8 permease compare
PS417_06845 -0.4 -1.0 lipoprotein compare
PS417_11945 -0.4 -1.3 hypothetical protein compare
PS417_24500 -0.4 -1.6 DEAD/DEAH box helicase compare
PS417_26900 -0.4 -1.0 L-cystine transporter tcyP compare
PS417_02055 -0.4 -1.9 methyltransferase compare
PS417_05100 -0.4 -0.9 RNA polymerase sigma factor compare
PS417_16520 -0.4 -1.0 cold-shock protein compare
PS417_08840 -0.4 -2.9 serine/threonine protein kinase compare
PS417_07420 -0.4 -1.8 restriction endonuclease compare
PS417_21285 -0.4 -2.1 hypothetical protein compare
PS417_04495 -0.4 -3.1 LITAF-like zinc ribbon domain containing protein compare
PS417_01425 -0.4 -1.7 AraC family transcriptional regulator compare
PS417_11440 -0.4 -0.7 hypothetical protein compare
PS417_18165 -0.4 -1.9 membrane protein compare
PS417_09305 -0.4 -1.6 hypothetical protein compare
PS417_27380 -0.4 -1.0 GntR family transcriptional regulator compare
PS417_16750 -0.4 -1.4 ABC transporter ATP-binding protein compare
PS417_20160 -0.4 -2.3 cysteine synthase compare
PS417_08105 -0.4 -3.2 N-ethylammeline chlorohydrolase compare
PS417_03260 -0.4 -0.4 5S ribosomal RNA compare
PS417_25815 -0.4 -1.5 magnesium transporter ApaG compare


Specific Phenotypes

None in this experiment

For Pseudomonas simiae WCS417 in stress experiments

For stress 6-methoxy-2(3H)-benzoxazolone across organisms