Experiment set30S210 for Pseudomonas simiae WCS417

Compare to:

TSB 0.5x with Dimethyl Sulfoxide 0.5 vol%; timepoint 2

200 most important genes:

  gene name fitness t score description  
PS417_22565 -3.2 -1.0 formyltetrahydrofolate deformylase compare
PS417_21430 -2.1 -2.7 3-oxoacyl-ACP synthase compare
PS417_27795 -2.1 -0.7 orotate phosphoribosyltransferase compare
PS417_18310 -1.8 -1.0 hypothetical protein compare
PS417_24615 -1.7 -1.2 hypothetical protein compare
PS417_01920 -1.6 -0.7 ATP-dependent protease subunit HslV compare
PS417_20715 -1.6 -2.0 cytochrome Cbb3 compare
PS417_26730 -1.5 -0.9 pyrroline-5-carboxylate reductase compare
PS417_23950 -1.4 -1.5 polynucleotide phosphorylase/polyadenylase compare
PS417_03560 -1.3 -1.6 GTP-binding protein compare
PS417_22520 -1.3 -1.3 histidine kinase compare
PS417_06680 -1.3 -5.1 nuclease PIN compare
PS417_23375 -1.3 -2.6 cytochrome C oxidase compare
PS417_16555 -1.1 -2.0 cupin compare
PS417_19835 -1.1 -1.7 flagellar biosynthesis protein FliS compare
PS417_20785 -1.1 -1.2 transcriptional regulator compare
PS417_02555 -1.0 -6.6 exoribonuclease R compare
PS417_00755 -1.0 -0.9 biofilm PGA synthesis protein PgaD compare
PS417_20775 -1.0 -3.0 coproporphyrinogen III oxidase compare
PS417_04365 -1.0 -1.0 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase compare
PS417_05695 -1.0 -4.8 transcriptional regulator compare
PS417_23370 -1.0 -5.0 protoheme IX farnesyltransferase compare
PS417_17645 -0.9 -1.8 RND transporter compare
PS417_08540 -0.9 -2.3 RNA helicase compare
PS417_08125 -0.9 -0.4 prephenate dehydratase compare
PS417_27245 -0.9 -2.5 aminotransferase DegT compare
PS417_01915 -0.9 -0.3 ATP-dependent protease ATP-binding subunit HslU compare
PS417_23385 -0.8 -5.4 cytochrome o ubiquinol oxidase subunit I compare
PS417_27195 -0.8 -1.3 N-acetylglutamate synthase compare
PS417_23390 -0.8 -5.0 ubiquinol oxidase subunit II compare
PS417_22060 -0.8 -1.6 hypothetical protein compare
PS417_08135 -0.8 -2.2 3-phosphoshikimate 1-carboxyvinyltransferase compare
PS417_25790 -0.8 -1.9 aminoglycoside phosphotransferase compare
PS417_21655 -0.8 -1.0 aspartate kinase compare
PS417_06200 -0.8 -3.8 protein-PII uridylyltransferase compare
PS417_04305 -0.7 -1.4 aspartate ammonia-lyase compare
PS417_09235 -0.7 -1.2 molecular chaperone compare
PS417_11865 -0.7 -2.0 xylose isomerase compare
PS417_06770 -0.7 -3.1 multidrug transporter compare
PS417_03875 -0.7 -2.2 membrane protein compare
PS417_06375 -0.7 -0.4 deoxycytidine triphosphate deaminase compare
PS417_19065 -0.7 -1.2 monooxygenase compare
PS417_17000 -0.7 -1.4 MerR family transcriptional regulator compare
PS417_27705 -0.7 -1.6 amino acid dehydrogenase compare
PS417_05010 -0.7 -1.6 IclR family transcriptional regulator compare
PS417_02880 -0.7 -0.3 copper chaperone compare
PS417_23915 -0.7 -1.8 pantoate--beta-alanine ligase compare
PS417_02630 -0.7 -2.6 NAD synthetase compare
PS417_00385 -0.7 -0.9 Fur family transcriptional regulator compare
PS417_07710 -0.7 -1.5 membrane protein compare
PS417_07140 -0.7 -1.4 peptidase M48 compare
PS417_06500 -0.6 -1.6 hypothetical protein compare
PS417_26370 -0.6 -3.7 RNA helicase compare
PS417_11485 -0.6 -1.3 AraC family transcriptional regulator compare
PS417_24500 -0.6 -2.0 DEAD/DEAH box helicase compare
PS417_04705 -0.6 -1.4 hypothetical protein compare
PS417_21760 -0.6 -1.4 hypothetical protein compare
PS417_06730 -0.6 -1.3 3-carboxy-cis,cis-muconate cycloisomerase compare
PS417_23380 -0.6 -1.6 cytochrome o ubiquinol oxidase subunit III compare
PS417_19885 -0.6 -1.2 flagellar basal body rod protein FlgG compare
PS417_13755 -0.6 -1.4 oxidoreductase compare
PS417_03380 -0.6 -1.1 hypothetical protein compare
PS417_03260 -0.6 -0.7 5S ribosomal RNA compare
PS417_11925 -0.6 -1.8 hypothetical protein compare
PS417_10810 -0.6 -1.4 hypothetical protein compare
PS417_22840 -0.6 -1.1 tRNA-Met compare
PS417_08990 -0.6 -2.8 ABC transporter substrate-binding protein compare
PS417_17610 -0.6 -1.3 AsnC family transcriptional regulator compare
PS417_02485 -0.6 -1.2 tRNA delta(2)-isopentenylpyrophosphate transferase compare
PS417_05815 -0.6 -2.3 recombinase RecA compare
PS417_26990 -0.6 -0.4 RNA pyrophosphohydrolase compare
PS417_03100 -0.6 -0.9 pilus assembly protein compare
PS417_28275 -0.6 -2.5 cobalamin biosynthesis protein CobW compare
PS417_23545 -0.6 -1.1 gamma-glutamyl kinase compare
PS417_21625 -0.5 -0.9 DNA-binding protein compare
PS417_00510 -0.5 -1.0 membrane protein compare
PS417_26365 -0.5 -1.6 EmrB/QacA subfamily drug resistance transporter compare
PS417_13735 -0.5 -1.2 hypothetical protein compare
PS417_24230 -0.5 -3.0 ATP-dependent protease compare
PS417_17345 -0.5 -3.2 hypothetical protein compare
PS417_14540 -0.5 -1.3 cytochrome C oxidase subunit III compare
PS417_10910 -0.5 -1.6 FAD-dependent oxidoreductase compare
PS417_27945 -0.5 -1.2 type VI secretion protein ImpA compare
PS417_24370 -0.5 -0.7 (2Fe-2S)-binding protein compare
PS417_27380 -0.5 -2.1 GntR family transcriptional regulator compare
PS417_28200 -0.5 -1.7 hypothetical protein compare
PS417_27295 -0.5 -2.6 hypothetical protein compare
PS417_05975 -0.5 -0.5 chemotaxis protein CheW compare
PS417_07945 -0.5 -1.5 hypothetical protein compare
PS417_22815 -0.5 -2.6 permease compare
PS417_04270 -0.5 -3.5 ribonuclease G compare
PS417_08515 -0.5 -1.7 hypothetical protein compare
PS417_04375 -0.5 -0.8 ABC transporter ATP-binding protein compare
PS417_02280 -0.5 -1.0 GlcNAc-PI de-N-acetylase compare
PS417_24030 -0.5 -1.4 MFS transporter compare
PS417_24840 -0.5 -1.5 hypothetical protein compare
PS417_01955 -0.5 -3.4 peptidase compare
PS417_17415 -0.5 -1.5 histidine kinase compare
PS417_01290 -0.5 -1.2 ADP-ribose diphosphatase compare
PS417_24355 -0.5 -1.9 MFS transporter compare
PS417_27605 -0.5 -2.4 hypothetical protein compare
PS417_28070 -0.5 -3.4 phosphate ABC transporter ATP-binding protein compare
PS417_24320 -0.5 -2.3 large-conductance mechanosensitive channel compare
PS417_00045 -0.5 -0.4 glycerol acyltransferase compare
PS417_22210 -0.5 -1.1 AraC family transcriptional regulator compare
PS417_19755 -0.5 -1.2 flagellar motor switch protein FliM compare
PS417_08685 -0.5 -1.2 flagellar hook-length control protein FliK compare
PS417_25650 -0.5 -1.4 anhydro-N-acetylmuramic acid kinase compare
PS417_00080 -0.5 -3.0 potassium transporter peripheral membrane component compare
PS417_02225 -0.5 -1.0 bifunctional glutamine-synthetase adenylyltransferase/deadenyltransferase compare
PS417_01750 -0.5 -1.3 histidine ammonia-lyase compare
PS417_13165 -0.4 -1.2 peroxidase compare
PS417_12520 -0.4 -2.2 hypothetical protein compare
PS417_23900 -0.4 -3.1 poly(A) polymerase compare
PS417_05140 -0.4 -1.4 dipicolinate synthase compare
PS417_08785 -0.4 -2.1 urea transporter compare
PS417_05235 -0.4 -1.3 peptidase inhibitor I42 compare
PS417_01095 -0.4 -0.8 amino acid ABC transporter ATP-binding protein compare
PS417_17945 -0.4 -0.6 hypothetical protein compare
PS417_12280 -0.4 -0.8 MerR family transcriptional regulator compare
PS417_15520 -0.4 -1.2 hypothetical protein compare
PS417_04175 -0.4 -1.6 peptidase compare
PS417_22205 -0.4 -2.6 potassium transporter TrkH compare
PS417_12540 -0.4 -0.9 hypothetical protein compare
PS417_13455 -0.4 -1.7 alkaline proteinase inhibitor compare
PS417_09915 -0.4 -0.8 hypothetical protein compare
PS417_23080 -0.4 -1.1 sugar ABC transporter ATPase compare
PS417_15805 -0.4 -1.4 transporter compare
PS417_05810 -0.4 -2.1 damage-inducible protein CinA compare
PS417_10005 -0.4 -2.4 Pyocin large subunit-like protein compare
PS417_26605 -0.4 -0.8 malonate decarboxylase subunit beta compare
PS417_08155 -0.4 -0.6 integration host factor subunit beta compare
PS417_14565 -0.4 -1.5 chemotaxis protein compare
PS417_17855 -0.4 -1.7 major facilitator transporter compare
PS417_11390 -0.4 -1.8 LysR family transcriptional regulator compare
PS417_14940 -0.4 -1.1 LysR family transcriptional regulator compare
PS417_24650 -0.4 -1.3 membrane protein compare
PS417_01565 -0.4 -2.5 imidazole glycerol phosphate synthase compare
PS417_08090 -0.4 -0.5 3-oxoacyl-ACP reductase compare
PS417_20705 -0.4 -0.8 cbb3-type cytochrome c oxidase subunit II compare
PS417_23150 -0.4 -1.3 Cro/Cl family transcriptional regulator compare
PS417_14245 -0.4 -1.5 hypothetical protein compare
PS417_21090 -0.4 -1.3 hypothetical protein compare
PS417_12855 -0.4 -1.6 3-phosphoshikimate 1-carboxyvinyltransferase compare
PS417_04170 -0.4 -1.7 stringent starvation protein A compare
PS417_23770 -0.4 -0.6 exodeoxyribonuclease V subunit alpha compare
PS417_10245 -0.4 -1.2 hypothetical protein compare
PS417_02975 -0.4 -1.4 3-dehydroquinate dehydratase compare
PS417_15065 -0.4 -1.0 GntR family transcriptional regulator compare
PS417_00845 -0.4 -1.0 transcriptional regulator compare
PS417_23250 -0.4 -2.0 S-adenosylmethionine tRNA ribosyltransferase compare
PS417_11345 -0.4 -1.6 membrane protein compare
PS417_27585 -0.4 -1.0 diaminopimelate epimerase compare
PS417_22795 -0.4 -0.7 exclusion suppressor FxsA compare
PS417_15085 -0.4 -1.3 ATPase AAA compare
PS417_01030 -0.4 -0.9 glutamine ABC transporter substrate-binding protein compare
PS417_03550 -0.4 -1.5 hypothetical protein compare
PS417_02770 -0.4 -1.0 membrane protein compare
PS417_28280 -0.4 -1.2 hypothetical protein compare
PS417_07175 -0.4 -2.5 beta-lactamase compare
PS417_10105 -0.4 -2.1 hypothetical protein compare
PS417_15975 -0.4 -1.1 glutamate carboxypeptidase compare
PS417_26175 -0.4 -0.6 sarcosine oxidase subunit gamma compare
PS417_05270 -0.4 -2.4 3-oxoacyl-ACP reductase compare
PS417_27035 -0.4 -1.8 FAD-linked oxidase compare
PS417_27940 -0.4 -1.1 type VI secretion protein compare
PS417_14080 -0.4 -1.7 hypothetical protein compare
PS417_14145 -0.4 -2.9 hypothetical protein compare
PS417_19955 -0.4 -1.0 hypothetical protein compare
PS417_06355 -0.4 -2.0 protein-L-isoaspartate O-methyltransferase compare
PS417_16045 -0.4 -1.3 acyl-CoA dehydrogenase compare
PS417_06335 -0.4 -1.5 S-formylglutathione hydrolase compare
PS417_27425 -0.4 -2.1 exopolyphosphatase compare
PS417_20880 -0.4 -1.1 GntR family transcriptional regulator compare
PS417_02560 -0.4 -0.8 23S rRNA methyltransferase compare
PS417_15120 -0.4 -2.5 chromosome segregation protein SMC compare
PS417_07240 -0.4 -1.4 Transcriptional regulator of deoxyribose catabolism (from data) compare
PS417_09470 -0.4 -0.4 hypothetical protein compare
PS417_25155 -0.4 -0.8 hypothetical protein compare
PS417_06895 -0.4 -1.4 DNA-binding protein compare
PS417_00065 -0.4 -0.9 3-methyladenine DNA glycosylase compare
PS417_10455 -0.4 -1.3 membrane protein compare
PS417_01850 -0.4 -1.4 phosphoribosyl-ATP pyrophosphatase (EC 3.6.1.31) (from data) compare
PS417_19605 -0.4 -0.7 hypothetical protein compare
PS417_28145 -0.4 -0.9 AraC family transcriptional regulator compare
PS417_11060 -0.4 -1.5 transporter compare
PS417_11570 -0.4 -1.4 ABC transporter permease compare
PS417_27975 -0.4 -2.6 type VI secretion protein compare
PS417_07795 -0.4 -2.1 hypothetical protein compare
PS417_25145 -0.4 -0.9 hypothetical protein compare
PS417_27590 -0.4 -2.4 hypothetical protein compare
PS417_15095 -0.4 -1.4 hypothetical protein compare
PS417_11945 -0.4 -0.9 hypothetical protein compare
PS417_04290 -0.4 -2.0 hypothetical protein compare
PS417_04435 -0.4 -3.0 uracil phosphoribosyltransferase compare
PS417_00185 -0.4 -0.8 tryptophan synthase subunit beta compare
PS417_09420 -0.4 -1.3 LysR family transcriptional regulator compare
PS417_17440 -0.3 -1.3 beta-lactamase compare
PS417_22825 -0.3 -1.4 hypothetical protein compare
PS417_05210 -0.3 -1.9 copper oxidase compare


Specific Phenotypes

None in this experiment

For Pseudomonas simiae WCS417 in no stress control experiments

For no stress control Dimethyl Sulfoxide across organisms