Experiment set30S210 for Pseudomonas simiae WCS417

Compare to:

TSB 0.5x with Dimethyl Sulfoxide 0.5 vol%; timepoint 2

200 most detrimental genes:

  gene name fitness t score description  
PS417_04585 +1.5 2.3 hypothetical protein compare
PS417_16490 +1.4 2.8 cell division protein FtsK compare
PS417_22445 +1.4 3.6 ATP-dependent DNA helicase RuvB compare
PS417_21515 +1.2 9.6 transcriptional regulator compare
PS417_00405 +1.0 7.4 DNA polymerase I compare
PS417_16370 +1.0 5.4 chemotaxis protein CheY compare
PS417_10645 +1.0 8.8 magnesium ABC transporter ATPase compare
PS417_04595 +0.9 2.4 cell division protein MraZ compare
PS417_21480 +0.9 1.9 23S rRNA pseudouridylate synthase compare
PS417_10720 +0.9 3.2 chemotaxis protein CheY compare
PS417_20080 +0.9 3.8 peptidase P60 compare
PS417_24835 +0.8 4.7 hypothetical protein compare
PS417_10305 +0.8 2.6 hypothetical protein compare
PS417_19560 +0.8 5.6 amino acid ABC transporter substrate-binding protein compare
PS417_07035 +0.7 4.4 uracil-DNA glycosylase compare
PS417_01815 +0.7 0.9 peptide ABC transporter ATP-binding protein compare
PS417_18370 +0.7 2.8 hypothetical protein compare
PS417_01375 +0.7 1.6 hypothetical protein compare
PS417_02950 +0.7 1.9 tRNA-dihydrouridine synthase B compare
PS417_07875 +0.7 1.3 hypothetical protein compare
PS417_03385 +0.7 2.0 flavin reductase compare
PS417_16885 +0.7 2.8 hypothetical protein compare
PS417_03465 +0.6 1.5 type III secretion protein compare
PS417_21000 +0.6 0.9 CrfX protein compare
PS417_28050 +0.6 2.7 hypothetical protein compare
PS417_02475 +0.6 2.0 N-acetylmuramoyl-L-alanine amidase compare
PS417_08335 +0.6 1.1 hypothetical protein compare
PS417_06150 +0.6 3.1 SAM-dependent methlyltransferase compare
PS417_01145 +0.5 1.0 taurine transporter ATP-binding subunit compare
PS417_28190 +0.5 2.7 amino acid ABC transporter substrate-binding protein compare
PS417_14315 +0.5 1.8 2,5-dioxovalerate dehydrogenase compare
PS417_07865 +0.5 1.8 hypothetical protein compare
PS417_06540 +0.5 1.4 membrane protein compare
PS417_21510 +0.5 1.9 histidine kinase compare
PS417_01045 +0.5 1.3 RND transporter compare
PS417_02385 +0.5 1.2 esterase compare
PS417_17685 +0.5 1.0 allantoate amidohydrolase compare
PS417_26060 +0.5 1.2 DNA polymerase III subunit epsilon compare
PS417_19735 +0.5 1.6 flagellar biosynthesis protein FliQ compare
PS417_20365 +0.5 2.7 Cro/Cl family transcriptional regulator compare
PS417_14595 +0.5 1.7 pyrroline-5-carboxylate reductase compare
PS417_14810 +0.5 1.3 Fosmidomycin resistance protein compare
PS417_27935 +0.5 1.3 type VI secretion protein compare
PS417_11770 +0.5 1.2 pyruvate dehydrogenase compare
PS417_08680 +0.5 1.1 flagellar biosynthesis protein FlhB compare
PS417_22330 +0.5 1.1 arginine deiminase compare
PS417_20650 +0.5 3.6 hypothetical protein compare
PS417_03705 +0.5 1.4 2-alkenal reductase compare
PS417_14755 +0.5 2.1 UV damage repair endonuclease UvdE compare
PS417_20585 +0.5 3.0 chemotaxis protein compare
PS417_05795 +0.5 3.7 lysozyme compare
PS417_01080 +0.5 2.3 acyl-CoA dehydrogenase compare
PS417_19285 +0.5 1.5 ankyrin compare
PS417_23095 +0.5 1.0 exodeoxyribonuclease compare
PS417_27595 +0.5 1.2 recombinase XerC compare
PS417_24710 +0.5 2.5 lipoprotein compare
PS417_22160 +0.4 2.7 3-beta hydroxysteroid dehydrogenase compare
PS417_16775 +0.4 1.9 branched-chain amino acid ABC transporter ATP-binding protein compare
PS417_14430 +0.4 1.6 AraC family transcriptional regulator compare
PS417_24935 +0.4 0.7 hypothetical protein compare
PS417_08250 +0.4 1.0 competence protein ComEA compare
PS417_06075 +0.4 1.4 hypothetical protein compare
PS417_19620 +0.4 1.2 hypothetical protein compare
PS417_17750 +0.4 2.3 hypothetical protein compare
PS417_01005 +0.4 1.4 methionine ABC transporter substrate-binding protein compare
PS417_11825 +0.4 1.6 transcriptional regulator compare
PS417_19095 +0.4 1.2 hypothetical protein compare
PS417_27435 +0.4 3.1 polyphosphate kinase compare
PS417_08185 +0.4 2.5 glycosyl transferase compare
PS417_04920 +0.4 2.2 GntR family transcriptional regulator compare
PS417_19295 +0.4 3.1 hypothetical protein compare
PS417_01645 +0.4 1.2 cupin compare
PS417_02895 +0.4 1.4 precorrin-6Y C5,15-methyltransferase compare
PS417_27815 +0.4 1.3 hypothetical protein compare
PS417_00450 +0.4 2.6 chemotaxis protein CheY compare
PS417_20875 +0.4 1.7 chromosome segregation protein SMC compare
PS417_28265 +0.4 1.2 pyridoxamine kinase compare
PS417_11820 +0.4 1.3 histidine kinase compare
PS417_19400 +0.4 1.7 amino acid transporter LysE compare
PS417_02765 +0.4 1.3 phosphate starvation-inducible protein PsiF compare
PS417_14195 +0.4 3.0 magnesium ABC transporter ATPase compare
PS417_02040 +0.4 2.5 3-hydroxylacyl-ACP dehydratase compare
PS417_09330 +0.4 1.4 NAD(P)H-quinone oxidoreductase compare
PS417_27640 +0.4 0.6 TetR family transcriptional regulator compare
PS417_16050 +0.4 1.3 energy transducer TonB compare
PS417_14160 +0.4 1.5 hypothetical protein compare
PS417_24085 +0.4 1.3 protein RnfH compare
PS417_06100 +0.4 1.2 SAM-dependent methyltransferase compare
PS417_12565 +0.4 1.4 2-dehydro-3-deoxygluconokinase compare
PS417_03815 +0.4 1.2 DNA transporter compare
PS417_05925 +0.4 1.5 spermidine/putrescine ABC transporter permease compare
PS417_20855 +0.4 0.7 hypothetical protein compare
PS417_04935 +0.4 1.5 hypothetical protein compare
PS417_08160 +0.4 1.6 hypothetical protein compare
PS417_06045 +0.4 1.4 membrane protein compare
PS417_16495 +0.4 1.7 leucyl/phenylalanyl-tRNA--protein transferase compare
PS417_00705 +0.4 1.2 MarR family transcriptional regulator compare
PS417_15510 +0.4 1.2 hypothetical protein compare
PS417_14260 +0.4 1.5 phosphate ABC transporter permease compare
PS417_21355 +0.4 1.5 hypothetical protein compare
PS417_02680 +0.4 1.9 hypothetical protein compare
PS417_06970 +0.4 1.7 LysR family transcriptional regulator compare
PS417_13980 +0.4 1.9 MFS transporter permease compare
PS417_21070 +0.4 1.1 aconitate hydratase compare
PS417_08205 +0.4 1.5 acetyltransferase compare
PS417_09865 +0.4 1.2 hypothetical protein compare
PS417_04410 +0.4 1.8 hypothetical protein compare
PS417_28010 +0.4 1.3 pyridine nucleotide-disulfide oxidoreductase compare
PS417_25710 +0.4 0.8 indole-3-glycerol-phosphate synthase compare
PS417_03740 +0.4 1.3 peptidylprolyl isomerase compare
PS417_28325 +0.4 1.4 phosphoribosyl-AMP cyclohydrolase compare
PS417_24885 +0.4 1.8 transcriptional regulator compare
PS417_08650 +0.4 1.5 transcriptional regulator compare
PS417_18545 +0.4 1.4 cell division protein compare
PS417_09600 +0.4 1.1 glycosyl transferase family 1 compare
PS417_14305 +0.4 1.7 hydroxyproline-2-epimerase compare
PS417_15705 +0.4 1.3 nitrate reductase compare
PS417_10480 +0.4 1.2 glutathione S-transferase compare
PS417_24350 +0.4 1.9 cytochrome D ubiquinol oxidase subunit I compare
PS417_16985 +0.4 1.3 membrane protein compare
PS417_21560 +0.3 2.3 flagellar basal body rod modification protein FlgD compare
PS417_02890 +0.3 1.0 cobalt-precorrin-6X reductase compare
PS417_10015 +0.3 0.8 hypothetical protein compare
PS417_28020 +0.3 1.8 chorismate--pyruvate lyase compare
PS417_06395 +0.3 1.2 amino acid transporter compare
PS417_12455 +0.3 1.3 hydrolase compare
PS417_18710 +0.3 2.5 hypothetical protein compare
PS417_11900 +0.3 3.3 conjugal transfer protein TraR compare
PS417_03475 +0.3 1.2 type III secretion protein compare
PS417_21870 +0.3 1.0 glycerophosphodiester phosphodiesterase compare
PS417_26915 +0.3 1.4 GTPase SAR1 compare
PS417_14905 +0.3 0.9 C4-dicarboxylate ABC transporter compare
PS417_00455 +0.3 1.2 hypothetical protein compare
PS417_17810 +0.3 1.8 microcin B17-processing protein McbB compare
PS417_07655 +0.3 1.5 glycerophosphodiester phosphodiesterase compare
PS417_02150 +0.3 2.1 potassium/proton antiporter compare
PS417_00075 +0.3 1.4 hypothetical protein compare
PS417_08045 +0.3 1.3 uracil permease compare
PS417_18540 +0.3 2.0 colicin V production CvpA compare
PS417_15990 +0.3 1.9 GntR family transcriptional regulator compare
PS417_24575 +0.3 0.8 hypothetical protein compare
PS417_08295 +0.3 1.3 ATPase compare
PS417_04385 +0.3 0.6 organic solvent ABC transporter substrate-binding protein compare
PS417_10550 +0.3 1.3 DNA topoisomerase III compare
PS417_17890 +0.3 2.0 3-oxoacyl-ACP reductase compare
PS417_25700 +0.3 1.3 cyclic AMP receptor protein compare
PS417_26985 +0.3 2.1 phosphoenolpyruvate-protein phosphotransferase compare
PS417_19335 +0.3 1.3 isochorismatase compare
PS417_06710 +0.3 0.9 beta-ketoadipyl CoA thiolase compare
PS417_17840 +0.3 1.4 betaine-aldehyde dehydrogenase compare
PS417_17120 +0.3 2.0 protein kinase compare
PS417_22870 +0.3 1.5 lipoprotein compare
PS417_01130 +0.3 1.5 L-glyceraldehyde 3-phosphate reductase compare
PS417_13525 +0.3 1.9 membrane protein compare
PS417_20670 +0.3 2.3 glycosyl transferase family 2 compare
PS417_00485 +0.3 1.3 ABC transporter permease compare
PS417_08190 +0.3 2.7 membrane protein compare
PS417_18090 +0.3 1.4 iron ABC transporter compare
PS417_15250 +0.3 1.5 DNA repair protein compare
PS417_01390 +0.3 2.3 PbsX family transcriptional regulator compare
PS417_06635 +0.3 0.9 ferredoxin compare
PS417_17670 +0.3 1.6 ABC transporter permease compare
PS417_27135 +0.3 0.4 glutamine synthetase compare
PS417_15930 +0.3 1.5 thioredoxin reductase compare
PS417_20310 +0.3 1.0 hypothetical protein compare
PS417_03315 +0.3 1.8 hypothetical protein compare
PS417_18590 +0.3 1.6 SAM-dependent methyltransferase compare
PS417_18560 +0.3 1.8 N-(5'-phosphoribosyl)anthranilate isomerase compare
PS417_26240 +0.3 1.3 N-methylproline demethylase compare
PS417_23735 +0.3 1.4 hypothetical protein compare
PS417_27290 +0.3 0.6 hypothetical protein compare
PS417_09610 +0.3 1.7 beta-xylosidase compare
PS417_15545 +0.3 2.3 glucosidase compare
PS417_05105 +0.3 1.0 membrane protein compare
PS417_07410 +0.3 1.2 hypothetical protein compare
PS417_20600 +0.3 2.3 hypothetical protein compare
PS417_11015 +0.3 1.3 Ketoglutarate semialdehyde dehydrogenase (EC 1.2.1.26) (from data) compare
PS417_13855 +0.3 0.7 acetyl-CoA acetyltransferase compare
PS417_27155 +0.3 0.8 aliphatic sulfonates transport ATP-binding subunit compare
PS417_05550 +0.3 0.8 amino acid ABC transporter permease compare
PS417_05850 +0.3 1.5 LysR family transcriptional regulator compare
PS417_13660 +0.3 1.3 AsnC family transcriptional regulator compare
PS417_10025 +0.3 0.5 bacteriophage lambda NinG family protein compare
PS417_12175 +0.3 1.6 peptide ABC transporter permease compare
PS417_03920 +0.3 1.2 dephospho-CoA kinase compare
PS417_19695 +0.3 1.7 flagellar biosynthesis sigma factor compare
PS417_27870 +0.3 1.1 ATP-dependent DNA helicase RecG compare
PS417_04475 +0.3 1.3 hypothetical protein compare
PS417_04975 +0.3 1.6 response regulator receiver protein compare
PS417_20920 +0.3 2.4 D-alanyl-D-alanine carboxypeptidase compare
PS417_02640 +0.3 1.9 LysR family transcriptional regulator compare
PS417_21705 +0.3 1.7 arginine N-succinyltransferase compare
PS417_12805 +0.3 2.3 glycogen branching protein compare
PS417_26125 +0.3 1.7 glutathione S-transferase compare
PS417_09630 +0.3 2.0 glycosyl transferase compare
PS417_26935 +0.3 1.3 phosphonate ABC transporter substrate-binding protein compare
PS417_16160 +0.3 0.8 ABC transporter substrate-binding protein compare
PS417_16120 +0.3 1.6 transcriptional regulator compare
PS417_08505 +0.3 1.4 membrane protein compare
PS417_22050 +0.3 1.7 ribonuclease BN compare


Specific Phenotypes

None in this experiment

For Pseudomonas simiae WCS417 in no stress control experiments

For no stress control Dimethyl Sulfoxide across organisms