Experiment set30S207 for Pseudomonas simiae WCS417

Compare to:

TSB 0.5x with 6-methoxy-2(3H)-benzoxazolone 1250 uM; timepoint 1

200 most important genes:

  gene name fitness t score description  
PS417_22565 -3.3 -0.8 formyltetrahydrofolate deformylase compare
PS417_20715 -2.6 -1.7 cytochrome Cbb3 compare
PS417_05975 -2.6 -1.1 chemotaxis protein CheW compare
PS417_27795 -2.5 -0.6 orotate phosphoribosyltransferase compare
PS417_21430 -2.5 -2.2 3-oxoacyl-ACP synthase compare
PS417_23770 -2.4 -1.8 exodeoxyribonuclease V subunit alpha compare
PS417_08125 -2.3 -0.6 prephenate dehydratase compare
PS417_23950 -2.2 -1.3 polynucleotide phosphorylase/polyadenylase compare
PS417_26730 -2.0 -0.9 pyrroline-5-carboxylate reductase compare
PS417_22520 -2.0 -1.6 histidine kinase compare
PS417_23995 -1.8 -1.5 preprotein translocase subunit SecG compare
PS417_07140 -1.7 -2.4 peptidase M48 compare
PS417_27245 -1.7 -3.5 aminotransferase DegT compare
PS417_00385 -1.6 -1.6 Fur family transcriptional regulator compare
PS417_18310 -1.5 -0.6 hypothetical protein compare
PS417_06375 -1.3 -0.5 deoxycytidine triphosphate deaminase compare
PS417_27865 -1.3 -1.6 LysR family transcriptional regulator compare
PS417_19490 -1.3 -3.1 mechanosensitive ion channel protein compare
PS417_01915 -1.3 -0.3 ATP-dependent protease ATP-binding subunit HslU compare
PS417_01920 -1.2 -0.6 ATP-dependent protease subunit HslV compare
PS417_06730 -1.2 -1.6 3-carboxy-cis,cis-muconate cycloisomerase compare
PS417_23380 -1.2 -2.7 cytochrome o ubiquinol oxidase subunit III compare
PS417_06680 -1.2 -5.2 nuclease PIN compare
PS417_23390 -1.2 -6.6 ubiquinol oxidase subunit II compare
PS417_23385 -1.1 -6.1 cytochrome o ubiquinol oxidase subunit I compare
PS417_23375 -1.1 -2.4 cytochrome C oxidase compare
PS417_27585 -1.1 -1.8 diaminopimelate epimerase compare
PS417_27135 -1.0 -0.7 glutamine synthetase compare
PS417_20775 -1.0 -2.1 coproporphyrinogen III oxidase compare
PS417_04585 -1.0 -0.8 hypothetical protein compare
PS417_02255 -1.0 -2.1 lipopolysaccharide kinase compare
PS417_10095 -1.0 -1.1 hypothetical protein compare
PS417_22450 -1.0 -0.8 ATP-dependent DNA helicase RuvA compare
PS417_11440 -1.0 -1.2 hypothetical protein compare
PS417_06600 -1.0 -1.0 leucine/isoleucine/valine transporter ATP-binding subunit compare
PS417_09325 -1.0 -2.7 peptidase S41 compare
PS417_26900 -0.9 -1.9 L-cystine transporter tcyP compare
PS417_17440 -0.9 -2.0 beta-lactamase compare
PS417_23370 -0.9 -3.6 protoheme IX farnesyltransferase compare
PS417_12355 -0.9 -1.8 magnesium chelatase compare
PS417_21480 -0.9 -0.9 23S rRNA pseudouridylate synthase compare
PS417_08090 -0.9 -0.6 3-oxoacyl-ACP reductase compare
PS417_02880 -0.9 -0.3 copper chaperone compare
PS417_15875 -0.9 -1.3 LuxR family transcriptional regulator compare
PS417_27075 -0.9 -1.5 thiol-disulfide isomerase compare
PS417_24705 -0.9 -0.9 D-alanyl-D-alanine carboxypeptidase compare
PS417_28070 -0.9 -4.1 phosphate ABC transporter ATP-binding protein compare
PS417_03385 -0.9 -1.5 flavin reductase compare
PS417_05985 -0.9 -1.7 chemotaxis protein CheY compare
PS417_21855 -0.9 -1.8 hypothetical protein compare
PS417_00510 -0.9 -1.3 membrane protein compare
PS417_26775 -0.9 -4.5 thiazole synthase compare
PS417_02975 -0.9 -2.8 3-dehydroquinate dehydratase compare
PS417_20635 -0.9 -1.1 ABC transporter ATP-binding protein compare
PS417_16005 -0.8 -1.8 ATPase compare
PS417_02555 -0.8 -4.6 exoribonuclease R compare
PS417_24600 -0.8 -4.0 hydrogenase compare
PS417_06200 -0.8 -3.5 protein-PII uridylyltransferase compare
PS417_08135 -0.8 -2.2 3-phosphoshikimate 1-carboxyvinyltransferase compare
PS417_22060 -0.8 -1.0 hypothetical protein compare
PS417_01575 -0.8 -1.9 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (from data) compare
PS417_04365 -0.8 -0.8 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase compare
PS417_27300 -0.7 -0.5 cell division protein ZapA compare
PS417_04220 -0.7 -1.2 4-carboxymuconolactone decarboxylase compare
PS417_05815 -0.7 -2.5 recombinase RecA compare
PS417_12755 -0.7 -2.2 RND transporter compare
PS417_00045 -0.7 -0.6 glycerol acyltransferase compare
PS417_08540 -0.7 -1.5 RNA helicase compare
PS417_06770 -0.7 -2.3 multidrug transporter compare
PS417_16400 -0.7 -1.3 NAD(P)H-quinone oxidoreductase compare
PS417_03875 -0.7 -1.5 membrane protein compare
PS417_02270 -0.7 -2.6 carbamoyltransferase compare
PS417_02485 -0.7 -1.3 tRNA delta(2)-isopentenylpyrophosphate transferase compare
PS417_03100 -0.7 -1.1 pilus assembly protein compare
PS417_12855 -0.7 -2.8 3-phosphoshikimate 1-carboxyvinyltransferase compare
PS417_00345 -0.7 -1.2 copper-binding protein compare
PS417_11705 -0.7 -2.1 cyclic peptide transporter compare
PS417_21760 -0.7 -1.3 hypothetical protein compare
PS417_11320 -0.7 -1.4 hypothetical protein compare
PS417_24615 -0.7 -0.6 hypothetical protein compare
PS417_24605 -0.7 -2.0 thiamine-phosphate pyrophosphorylase compare
PS417_21090 -0.7 -2.2 hypothetical protein compare
PS417_21655 -0.7 -0.9 aspartate kinase compare
PS417_28080 -0.7 -5.0 phosphate ABC transporter permease compare
PS417_04380 -0.7 -0.3 ABC transporter permease compare
PS417_24525 -0.7 -1.1 nuclease compare
PS417_26340 -0.7 -2.9 betaine-aldehyde dehydrogenase compare
PS417_02745 -0.6 -1.9 FMN-dependent NADH-azoreductase compare
PS417_00375 -0.6 -2.4 membrane protein compare
PS417_02280 -0.6 -0.9 GlcNAc-PI de-N-acetylase compare
PS417_13425 -0.6 -0.8 cupin compare
PS417_02475 -0.6 -1.0 N-acetylmuramoyl-L-alanine amidase compare
PS417_21630 -0.6 -1.0 magnesium transporter compare
PS417_23545 -0.6 -1.3 gamma-glutamyl kinase compare
PS417_13185 -0.6 -1.2 RND transporter compare
PS417_22620 -0.6 -1.5 pyruvate kinase compare
PS417_06330 -0.6 -2.5 S-(hydroxymethyl)glutathione dehydrogenase compare
PS417_04410 -0.6 -1.1 hypothetical protein compare
PS417_10710 -0.6 -1.3 GNAT family acetyltransferase compare
PS417_14925 -0.6 -1.7 2-methylcitrate dehydratase compare
PS417_24155 -0.6 -0.9 ATP-binding protein compare
PS417_27425 -0.6 -3.3 exopolyphosphatase compare
PS417_14590 -0.6 -0.9 LysR family transcriptional regulator compare
PS417_00065 -0.6 -0.7 3-methyladenine DNA glycosylase compare
PS417_14295 -0.6 -1.9 AraC family transcriptional regulator compare
PS417_03260 -0.6 -0.6 5S ribosomal RNA compare
PS417_05965 -0.6 -2.2 chemotaxis protein CheW compare
PS417_06025 -0.6 -2.2 alpha/beta hydrolase compare
PS417_17415 -0.6 -2.0 histidine kinase compare
PS417_08410 -0.6 -1.4 hypothetical protein compare
PS417_00080 -0.6 -3.4 potassium transporter peripheral membrane component compare
PS417_21355 -0.6 -1.7 hypothetical protein compare
PS417_24800 -0.6 -1.7 UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase compare
PS417_27815 -0.6 -1.2 hypothetical protein compare
PS417_14070 -0.6 -1.4 hypothetical protein compare
PS417_03455 -0.6 -1.0 type III secretion protein compare
PS417_18040 -0.6 -1.1 general secretion pathway protein GspN compare
PS417_16535 -0.6 -1.6 NUDIX hydrolase compare
PS417_24745 -0.6 -1.0 gamma-glutamyl phosphate reductase compare
PS417_22825 -0.6 -2.9 hypothetical protein compare
PS417_07980 -0.6 -1.3 twitching motility protein PilT compare
PS417_05165 -0.6 -2.0 cytosol aminopeptidase compare
PS417_20115 -0.6 -1.4 hypothetical protein compare
PS417_19605 -0.6 -0.7 hypothetical protein compare
PS417_15090 -0.6 -1.2 hypothetical protein compare
PS417_22810 -0.6 -1.5 DNA base-flipping protein YbaZ compare
PS417_15735 -0.5 -2.9 histidine kinase compare
PS417_19720 -0.5 -1.0 DNA-binding protein compare
PS417_12110 -0.5 -0.7 ATP-binding protein compare
PS417_27505 -0.5 -1.8 transcriptional regulator compare
PS417_26370 -0.5 -2.1 RNA helicase compare
PS417_19655 -0.5 -1.6 chemotaxis protein CheW compare
PS417_10985 -0.5 -0.6 NADH:flavin oxidoreductase compare
PS417_20030 -0.5 -1.3 nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase compare
PS417_08590 -0.5 -1.2 hypothetical protein compare
PS417_16160 -0.5 -1.4 ABC transporter substrate-binding protein compare
PS417_22205 -0.5 -2.7 potassium transporter TrkH compare
PS417_14555 -0.5 -1.5 AsnC family transcriptional regulator compare
PS417_09705 -0.5 -1.4 hypothetical protein compare
PS417_08350 -0.5 -1.3 preprotein translocase subunit TatD compare
PS417_13870 -0.5 -2.2 hypothetical protein compare
PS417_19065 -0.5 -0.7 monooxygenase compare
PS417_00180 -0.5 -1.1 tryptophan synthase subunit alpha compare
PS417_00900 -0.5 -1.4 4-aminobutyrate aminotransferase compare
PS417_04835 -0.5 -1.0 hemolysin D compare
PS417_05560 -0.5 -1.1 ABC transporter compare
PS417_01095 -0.5 -0.8 amino acid ABC transporter ATP-binding protein compare
PS417_01565 -0.5 -2.3 imidazole glycerol phosphate synthase compare
PS417_00380 -0.5 -1.2 zinc ABC transporter ATP-binding protein compare
PS417_26655 -0.5 -1.8 chemotaxis protein compare
PS417_04535 -0.5 -1.8 lysine transporter LysE compare
PS417_10245 -0.5 -1.1 hypothetical protein compare
PS417_08930 -0.5 -1.7 hypothetical protein compare
PS417_18595 -0.5 -1.6 3-isopropylmalate dehydratase compare
PS417_05125 -0.5 -2.0 sugar ABC transporter substrate-binding protein compare
PS417_05615 -0.5 -1.5 (2Fe-2S)-binding protein compare
PS417_20880 -0.5 -0.9 GntR family transcriptional regulator compare
PS417_20705 -0.5 -1.1 cbb3-type cytochrome c oxidase subunit II compare
PS417_22990 -0.5 -0.9 iron dicitrate transport regulator FecR compare
PS417_18690 -0.5 -1.8 aromatic amino acid aminotransferase compare
PS417_00960 -0.5 -1.2 transcriptional regulator compare
PS417_08685 -0.5 -0.8 flagellar hook-length control protein FliK compare
PS417_14780 -0.5 -2.2 GNAT family acetyltraansferase compare
PS417_09575 -0.5 -0.9 glutathione S-transferase compare
PS417_10005 -0.5 -2.2 Pyocin large subunit-like protein compare
PS417_02040 -0.5 -2.8 3-hydroxylacyl-ACP dehydratase compare
PS417_22795 -0.5 -0.8 exclusion suppressor FxsA compare
PS417_28270 -0.5 -2.8 hypothetical protein compare
PS417_20795 -0.5 -1.5 acyl-CoA dehydrogenase compare
PS417_09420 -0.5 -1.0 LysR family transcriptional regulator compare
PS417_10125 -0.5 -1.6 hypothetical protein compare
PS417_11305 -0.5 -1.4 general secretion pathway protein GspF compare
PS417_21270 -0.5 -0.9 translation initiation factor 2 compare
PS417_27000 -0.5 -1.6 membrane protein compare
PS417_09655 -0.5 -1.5 RNA polymerase sigma factor compare
PS417_26835 -0.5 -1.6 3-mercaptopyruvate sulfurtransferase compare
PS417_11885 -0.5 -1.4 Inositol transport system sugar-binding protein (from data) compare
PS417_01750 -0.5 -1.3 histidine ammonia-lyase compare
PS417_09680 -0.5 -1.1 hydrolase compare
PS417_02075 -0.5 -1.7 thioesterase compare
PS417_23015 -0.5 -2.1 NGG1p interacting factor 3 protein, NIF3 compare
PS417_06455 -0.5 -1.5 Fe(II)-dependent oxygenase compare
PS417_18730 -0.5 -0.8 ABC transporter permease compare
PS417_11345 -0.5 -1.7 membrane protein compare
PS417_17835 -0.5 -2.0 2-hydroxyhepta-2,4-diene-1,7-dioate isomerase compare
PS417_17580 -0.5 -2.0 citrulline utilization hydrolase (from data) compare
PS417_20785 -0.5 -0.5 transcriptional regulator compare
PS417_13645 -0.5 -0.8 ABC transporter compare
PS417_25915 -0.5 -1.9 carbon-nitrogen hydrolase compare
PS417_11375 -0.5 -1.2 hypothetical protein compare
PS417_15450 -0.5 -1.4 ABC transporter permease compare
PS417_08830 -0.5 -2.1 membrane protein compare
PS417_00810 -0.5 -1.1 RNA polymerase sigma factor compare
PS417_16760 -0.5 -2.0 membrane protein compare
PS417_00390 -0.5 -2.0 ABC transporter substrate-binding protein compare
PS417_24500 -0.5 -1.3 DEAD/DEAH box helicase compare
PS417_03350 -0.5 -1.4 cytochrome C peroxidase compare
PS417_26725 -0.5 -2.0 hypothetical protein compare
PS417_19955 -0.4 -0.7 hypothetical protein compare
PS417_08650 -0.4 -1.5 transcriptional regulator compare


Specific Phenotypes

None in this experiment

For Pseudomonas simiae WCS417 in stress experiments

For stress 6-methoxy-2(3H)-benzoxazolone across organisms