Experiment set30S202 for Pseudomonas simiae WCS417

Compare to:

TSB 0.5x with Dimethyl Sulfoxide 0.5 vol%; timepoint 1

200 most important genes:

  gene name fitness t score description  
PS417_22565 -3.2 -1.0 formyltetrahydrofolate deformylase compare
PS417_27795 -2.5 -0.7 orotate phosphoribosyltransferase compare
PS417_21430 -2.5 -2.2 3-oxoacyl-ACP synthase compare
PS417_22520 -2.1 -1.7 histidine kinase compare
PS417_01605 -2.1 -1.7 phosphoglycerate mutase compare
PS417_23770 -2.0 -2.1 exodeoxyribonuclease V subunit alpha compare
PS417_20715 -1.8 -2.1 cytochrome Cbb3 compare
PS417_20705 -1.5 -2.3 cbb3-type cytochrome c oxidase subunit II compare
PS417_26990 -1.4 -0.9 RNA pyrophosphohydrolase compare
PS417_27135 -1.3 -1.0 glutamine synthetase compare
PS417_27245 -1.3 -2.3 aminotransferase DegT compare
PS417_16555 -1.3 -1.3 cupin compare
PS417_01915 -1.2 -0.3 ATP-dependent protease ATP-binding subunit HslU compare
PS417_04365 -1.2 -1.1 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase compare
PS417_08540 -1.1 -2.4 RNA helicase compare
PS417_23390 -1.1 -8.0 ubiquinol oxidase subunit II compare
PS417_00045 -1.1 -0.9 glycerol acyltransferase compare
PS417_23915 -1.1 -2.2 pantoate--beta-alanine ligase compare
PS417_07560 -1.1 -1.9 universal stress protein UspA compare
PS417_27195 -1.0 -1.6 N-acetylglutamate synthase compare
PS417_23370 -1.0 -5.9 protoheme IX farnesyltransferase compare
PS417_26370 -1.0 -4.1 RNA helicase compare
PS417_27945 -1.0 -2.4 type VI secretion protein ImpA compare
PS417_00065 -1.0 -2.1 3-methyladenine DNA glycosylase compare
PS417_02880 -0.9 -0.4 copper chaperone compare
PS417_04385 -0.9 -1.2 organic solvent ABC transporter substrate-binding protein compare
PS417_27865 -0.9 -1.7 LysR family transcriptional regulator compare
PS417_18055 -0.9 -1.5 general secretion pathway protein GspK compare
PS417_23375 -0.9 -2.1 cytochrome C oxidase compare
PS417_21480 -0.9 -1.0 23S rRNA pseudouridylate synthase compare
PS417_02270 -0.9 -2.4 carbamoyltransferase compare
PS417_06680 -0.9 -3.3 nuclease PIN compare
PS417_28070 -0.9 -5.8 phosphate ABC transporter ATP-binding protein compare
PS417_19350 -0.8 -3.4 GTP cyclohydrolase compare
PS417_02280 -0.8 -1.1 GlcNAc-PI de-N-acetylase compare
PS417_05830 -0.8 -2.1 hypothetical protein compare
PS417_11485 -0.8 -1.7 AraC family transcriptional regulator compare
PS417_05535 -0.8 -1.8 Fis family transcriptional regulator compare
PS417_24370 -0.8 -1.0 (2Fe-2S)-binding protein compare
PS417_05905 -0.8 -1.2 hypothetical protein compare
PS417_24615 -0.8 -0.7 hypothetical protein compare
PS417_07455 -0.8 -1.5 glutamine amidotransferase compare
PS417_01715 -0.7 -1.6 hypothetical protein compare
PS417_00385 -0.7 -1.1 Fur family transcriptional regulator compare
PS417_23385 -0.7 -5.0 cytochrome o ubiquinol oxidase subunit I compare
PS417_27290 -0.7 -1.4 hypothetical protein compare
PS417_20025 -0.7 -1.4 alpha-ribazole phosphatase compare
PS417_01850 -0.7 -2.5 phosphoribosyl-ATP pyrophosphatase (EC 3.6.1.31) (from data) compare
PS417_15090 -0.7 -1.8 hypothetical protein compare
PS417_11510 -0.7 -1.4 AraC family transcriptional regulator compare
PS417_06200 -0.7 -3.8 protein-PII uridylyltransferase compare
PS417_02555 -0.7 -4.2 exoribonuclease R compare
PS417_23995 -0.7 -0.9 preprotein translocase subunit SecG compare
PS417_23380 -0.7 -2.3 cytochrome o ubiquinol oxidase subunit III compare
PS417_08090 -0.7 -0.7 3-oxoacyl-ACP reductase compare
PS417_05840 -0.7 -2.6 LuxR family transcriptional regulator compare
PS417_17345 -0.7 -3.1 hypothetical protein compare
PS417_02365 -0.7 -2.2 hypothetical protein compare
PS417_24225 -0.7 -2.2 hypothetical protein compare
PS417_06770 -0.7 -2.6 multidrug transporter compare
PS417_15805 -0.7 -1.6 transporter compare
PS417_00345 -0.6 -1.2 copper-binding protein compare
PS417_22795 -0.6 -1.2 exclusion suppressor FxsA compare
PS417_21890 -0.6 -2.0 magnesium transporter CorA compare
PS417_24600 -0.6 -4.4 hydrogenase compare
PS417_19955 -0.6 -1.4 hypothetical protein compare
PS417_09245 -0.6 -1.3 recombinase RdgC compare
PS417_21625 -0.6 -0.9 DNA-binding protein compare
PS417_24705 -0.6 -1.1 D-alanyl-D-alanine carboxypeptidase compare
PS417_27875 -0.6 -4.1 histidine kinase compare
PS417_02980 -0.6 -1.2 chemotaxis protein compare
PS417_17560 -0.6 -1.9 Dihydrolipoyl dehydrogenase (EC 1.8.1.4) (from data) compare
PS417_24785 -0.6 -1.6 nucleoside-diphosphate sugar epimerase compare
PS417_10445 -0.6 -2.3 LysR family transcriptional regulator compare
PS417_18450 -0.6 -2.9 hydrolase compare
PS417_02075 -0.6 -3.4 thioesterase compare
PS417_25650 -0.6 -2.0 anhydro-N-acetylmuramic acid kinase compare
PS417_14295 -0.6 -1.9 AraC family transcriptional regulator compare
PS417_02975 -0.6 -1.6 3-dehydroquinate dehydratase compare
PS417_07170 -0.6 -1.8 hypothetical protein compare
PS417_05900 -0.6 -2.4 TetR family transcriptional regulator compare
PS417_17680 -0.6 -2.6 ABC transporter compare
PS417_08170 -0.6 -2.8 capsular biosynthesis protein compare
PS417_22350 -0.6 -1.5 Fis family transcriptional regulator compare
PS417_21270 -0.6 -1.7 translation initiation factor 2 compare
PS417_10870 -0.6 -1.6 GABA permease compare
PS417_13165 -0.6 -0.9 peroxidase compare
PS417_24620 -0.6 -1.4 hypothetical protein compare
PS417_27295 -0.6 -3.4 hypothetical protein compare
PS417_04305 -0.6 -1.2 aspartate ammonia-lyase compare
PS417_27040 -0.6 -1.3 3-phosphoglycerate dehydrogenase compare
PS417_20775 -0.6 -1.5 coproporphyrinogen III oxidase compare
PS417_07890 -0.6 -1.4 hypothetical protein compare
PS417_08730 -0.5 -0.9 cytochrome C compare
PS417_27870 -0.5 -1.9 ATP-dependent DNA helicase RecG compare
PS417_19835 -0.5 -0.9 flagellar biosynthesis protein FliS compare
PS417_10435 -0.5 -2.0 serine/threonine protein kinase compare
PS417_17755 -0.5 -1.2 hypothetical protein compare
PS417_20515 -0.5 -2.0 FMN-dependent NADH-azoreductase compare
PS417_17925 -0.5 -1.6 acyl-CoA dehydrogenase compare
PS417_01400 -0.5 -2.2 hypothetical protein compare
PS417_17155 -0.5 -2.3 cytochrome B561 compare
PS417_05815 -0.5 -1.7 recombinase RecA compare
PS417_24605 -0.5 -2.3 thiamine-phosphate pyrophosphorylase compare
PS417_27075 -0.5 -1.3 thiol-disulfide isomerase compare
PS417_05140 -0.5 -1.5 dipicolinate synthase compare
PS417_27505 -0.5 -1.8 transcriptional regulator compare
PS417_21575 -0.5 -2.7 chemotaxis protein compare
PS417_00755 -0.5 -0.5 biofilm PGA synthesis protein PgaD compare
PS417_26775 -0.5 -1.6 thiazole synthase compare
PS417_01195 -0.5 -1.3 RNA-binding protein S4 compare
PS417_03260 -0.5 -0.6 5S ribosomal RNA compare
PS417_21845 -0.5 -1.5 membrane protein compare
PS417_08685 -0.5 -0.8 flagellar hook-length control protein FliK compare
PS417_01115 -0.5 -1.3 serine acetyltransferase compare
PS417_28080 -0.5 -4.0 phosphate ABC transporter permease compare
PS417_00455 -0.5 -1.1 hypothetical protein compare
PS417_09420 -0.5 -1.3 LysR family transcriptional regulator compare
PS417_04875 -0.5 -0.7 molybdenum cofactor biosynthesis protein MoaE compare
PS417_12855 -0.5 -1.7 3-phosphoshikimate 1-carboxyvinyltransferase compare
PS417_00220 -0.5 -1.0 hypothetical protein compare
PS417_28075 -0.5 -2.2 phosphate ABC transporter permease compare
PS417_10865 -0.5 -1.5 GNAT family acetyltransferase compare
PS417_16785 -0.5 -1.7 ABC transporter permease compare
PS417_11345 -0.5 -1.9 membrane protein compare
PS417_05100 -0.5 -1.4 RNA polymerase sigma factor compare
PS417_22870 -0.5 -2.0 lipoprotein compare
PS417_18420 -0.5 -1.3 deoxyribonuclease compare
PS417_14065 -0.5 -2.3 UTP--glucose-1-phosphate uridylyltransferase compare
PS417_10220 -0.5 -2.1 hypothetical protein compare
PS417_27705 -0.5 -1.2 amino acid dehydrogenase compare
PS417_19705 -0.5 -0.9 flagellar biosynthesis regulator FlhF compare
PS417_14455 -0.5 -1.7 polyketide cyclase compare
PS417_18490 -0.5 -1.7 hypothetical protein compare
PS417_08590 -0.5 -1.0 hypothetical protein compare
PS417_19675 -0.5 -2.1 chemotaxis protein CheY compare
PS417_03560 -0.5 -0.6 GTP-binding protein compare
PS417_27800 -0.5 -0.6 exodeoxyribonuclease III compare
PS417_27425 -0.5 -2.9 exopolyphosphatase compare
PS417_15085 -0.5 -1.4 ATPase AAA compare
PS417_27555 -0.5 -1.2 DNA-binding protein compare
PS417_22170 -0.5 -1.6 acetyltransferase compare
PS417_13185 -0.5 -1.3 RND transporter compare
PS417_17015 -0.5 -2.1 Isovaleryl-CoA dehydrogenase (EC 1.3.8.4) (from data) compare
PS417_19135 -0.5 -1.9 DeoR faimly transcriptional regulator compare
PS417_24500 -0.5 -1.3 DEAD/DEAH box helicase compare
PS417_17595 -0.5 -2.5 amino acid ABC transporter permease compare
PS417_17430 -0.5 -2.6 aldehyde dehydrogenase compare
PS417_17650 -0.5 -1.7 proteinase compare
PS417_02770 -0.5 -1.3 membrane protein compare
PS417_04800 -0.5 -0.9 alginate O-acetyltransferase compare
PS417_16045 -0.5 -1.9 acyl-CoA dehydrogenase compare
PS417_10365 -0.5 -2.5 AraC family transcriptional regulator compare
PS417_26755 -0.4 -0.9 nucleoside-triphosphate diphosphatase compare
PS417_01290 -0.4 -1.1 ADP-ribose diphosphatase compare
PS417_26695 -0.4 -0.7 uracil phosphoribosyltransferase compare
PS417_11375 -0.4 -2.0 hypothetical protein compare
PS417_11275 -0.4 -1.1 general secretion pathway protein GspG compare
PS417_14915 -0.4 -1.2 host specificity protein compare
PS417_08680 -0.4 -1.1 flagellar biosynthesis protein FlhB compare
PS417_24455 -0.4 -2.0 membrane protein compare
PS417_24350 -0.4 -2.3 cytochrome D ubiquinol oxidase subunit I compare
PS417_26725 -0.4 -1.8 hypothetical protein compare
PS417_14145 -0.4 -1.9 hypothetical protein compare
PS417_10060 -0.4 -1.3 hypothetical protein compare
PS417_02760 -0.4 -1.7 AraC family transcriptional regulator compare
PS417_12520 -0.4 -1.2 hypothetical protein compare
PS417_10480 -0.4 -1.1 glutathione S-transferase compare
PS417_14565 -0.4 -2.4 chemotaxis protein compare
PS417_01095 -0.4 -1.1 amino acid ABC transporter ATP-binding protein compare
PS417_17160 -0.4 -0.7 1-aminocyclopropane-1-carboxylate deaminase compare
PS417_15510 -0.4 -1.1 hypothetical protein compare
PS417_06745 -0.4 -1.3 polysaccharide deacetylase compare
PS417_22575 -0.4 -2.5 exonuclease I compare
PS417_02740 -0.4 -1.6 LysR family transcriptional regulator compare
PS417_21220 -0.4 -1.7 acetyl-CoA acetyltransferase compare
PS417_24235 -0.4 -2.1 hypothetical protein compare
PS417_20125 -0.4 -1.3 phosphoribosylglycinamide formyltransferase compare
PS417_13990 -0.4 -1.1 LysR family transcriptional regulator compare
PS417_02340 -0.4 -1.7 LysR family transcriptional regulator compare
PS417_04585 -0.4 -0.4 hypothetical protein compare
PS417_00180 -0.4 -1.0 tryptophan synthase subunit alpha compare
PS417_06055 -0.4 -1.6 pilin assembly protein compare
PS417_15800 -0.4 -2.6 photosynthetic protein synthase I compare
PS417_09235 -0.4 -0.6 molecular chaperone compare
PS417_17470 -0.4 -1.7 LuxR family transcriptional regulator compare
PS417_15610 -0.4 -1.5 GDP-mannose pyrophosphatase compare
PS417_23715 -0.4 -2.0 cupin compare
PS417_05470 -0.4 -1.8 DSBA oxidoreductase compare
PS417_01590 -0.4 -0.8 polysaccharide deacetylase compare
PS417_21900 -0.4 -2.0 allophanate hydrolase compare
PS417_13175 -0.4 -1.0 iron transporter compare
PS417_22705 -0.4 -1.0 glycerol-3-phosphate ABC transporter substrate-binding protein compare
PS417_03100 -0.4 -0.8 pilus assembly protein compare
PS417_14435 -0.4 -2.2 transcriptional regulator compare
PS417_03310 -0.4 -1.6 carbonate dehydratase compare
PS417_16400 -0.4 -1.1 NAD(P)H-quinone oxidoreductase compare
PS417_09300 -0.4 -1.4 peptidylprolyl isomerase compare
PS417_20985 -0.4 -0.3 porin compare
PS417_14140 -0.4 -1.0 membrane protein compare


Specific Phenotypes

None in this experiment

For Pseudomonas simiae WCS417 in no stress control experiments

For no stress control Dimethyl Sulfoxide across organisms