Experiment set30IT060 for Pseudomonas putida KT2440

Compare to:

Acanthamoeba sp., muxed culture-2

200 most important genes:

  gene name fitness t score description  
PP_4789 -6.6 -5.9 heat shock protein, Co2+ and Mg2+ efflux protein compare
PP_2646 -5.9 -3.9 conserved protein of unknown function compare
PP_2645 -5.6 -12.5 magnesium transporter, ATP-dependent compare
PP_4342 -5.2 -3.6 flagellar synthesis regulator, putative ATPase compare
PP_0856 -5.0 -7.7 conserved lipoprotein of unknown function compare
PP_0846 -4.9 -2.6 DnaK-like molecular chaperone specific for IscU compare
PP_1986 -4.7 -3.8 3-isopropylmalate dehydratase small subunit compare
PP_3245 -4.7 -2.1 conserved protein of unknown function compare
PP_5055 -4.6 -5.7 Sulfurtransferase compare
PP_1233 -4.4 -6.7 sulfurtransferase compare
PP_0082 -4.3 -8.8 tryptophan synthase alpha chain compare
PP_1995 -4.3 -10.4 N-(5'-phosphoribosyl)anthranilate isomerase compare
PP_0421 -4.0 -9.5 Anthranilate phosphoribosyltransferase compare
PP_4874 -3.9 -3.3 50S ribosomal protein L9 compare
PP_4519 -3.9 -14.9 Agglutination protein compare
PP_4008 -3.9 -10.1 ATP-dependent serine protease compare
PP_4804 -3.9 -3.8 RlpA-like lipoprotein compare
PP_5322 -3.8 -7.5 putative metal ion transporter compare
PP_1898 -3.8 -3.3 MotA/TolQ/ExbB proton channel family protein compare
PP_0417 -3.8 -17.2 Anthranilate synthase component 1 compare
PP_5114 -3.8 -4.3 putative adenine methyltransferase compare
PP_2336 -3.8 -5.1 aconitate hydratase 1 compare
PP_0852 -3.7 -5.0 Transcriptional regulator, Cro/CI family compare
PP_4909 -3.7 -9.7 phosphoserine phosphatase compare
PP_4722 -3.7 -6.6 Transcription elongation factor GreA compare
PP_5095 -3.7 -2.2 pyrroline-5-carboxylate reductase compare
PP_4143 -3.6 -4.7 conserved protein of unknown function compare
PP_0166 -3.6 -11.1 HlyD family secretion protein compare
PP_4994 -3.6 -5.3 conserved protein of unknown function compare
PP_0168 -3.5 -21.2 putative surface adhesion protein compare
PP_0313 -3.5 -3.2 putative electron transfer flavoprotein beta subunit compare
PP_0083 -3.5 -9.3 tryptophan synthase beta chain compare
PP_4401 -3.4 -8.0 branched-chain alpha-keto acid dehydrogenase complex, alpha subunit compare
PP_0167 -3.4 -16.7 Toxin secretion ATP-binding protein compare
PP_2330 -3.4 -5.0 conserved protein of unknown function compare
PP_1734 -3.3 -5.9 Probable septum site-determining protein MinC compare
PP_0127 -3.3 -4.4 Thiol:disulfide interchange protein compare
PP_4365 -3.2 -4.5 Flagellar protein FliJ compare
PP_0048 -3.2 -1.7 conserved protein of unknown function compare
PP_4999 -3.2 -2.2 dihydroorotase-like protein compare
PP_4902 -3.2 -3.2 Oligoribonuclease compare
PP_0165 -3.1 -14.7 GGDEF domain protein compare
PP_4693 -3.1 -6.4 RNA polymerase-binding transcription factor DksA compare
PP_0833 -3.1 -3.6 queuine tRNA-ribosyltransferase compare
PP_1309 -3.1 -8.6 conserved exported protein of unknown function compare
PP_4379 -3.0 -5.6 Beta-ketoacyl-acyl-carrier-protein synthase I compare
PP_0422 -3.0 -5.8 Indole-3-glycerol phosphate synthase compare
PP_0888 -3.0 -3.9 Photosynthetic apparatus regulatory protein RegA compare
PP_4355 -3.0 -1.8 flagellar export apparatus subunit compare
PP_4785 -3.0 -3.7 conserved exported protein of unknown function compare
PP_0435 -2.9 -8.4 Peptidase, M23/M37 family compare
PP_4880 -2.9 -12.1 exoribonuclease R compare
PP_4098 -2.9 -2.2 UvrABC system protein C compare
PP_0420 -2.9 -9.0 aminodeoxychorismate synthase / para-aminobenzoate synthase multi-enzyme complex compare
PP_4724 -2.9 -2.0 Carbamoyl-phosphate synthase small chain compare
PP_1428 -2.9 -2.6 Sigma factor AlgU negative regulatory protein compare
PP_4619 -2.9 -4.8 Maleylacetoacetate isomerase compare
PP_0834 -2.9 -2.4 Sec translocation complex subunit YajC compare
PP_2144 -2.9 -5.2 Transcriptional regulator, TetR family compare
PP_1206 -2.8 -10.2 basic-amino-acid specific porin OprD compare
PP_4803 -2.8 -5.9 D-alanyl-D-alanine carboxypeptidase compare
PP_4910 -2.8 -3.1 conserved protein of unknown function compare
PP_0725 -2.7 -7.0 conserved hypothetical TPR repeat protein compare
PP_3508 -2.7 -3.5 Protein CobW compare
PP_1669 -2.7 -5.2 NLP/P60 family protein compare
PP_0401 -2.7 -5.1 Ribosomal RNA small subunit methyltransferase A compare
PP_4356 -2.7 -2.4 Flagellar protein FliO compare
PP_4782 -2.7 -6.4 Phosphomethylpyrimidine kinase compare
PP_3244 -2.7 -4.3 Magnesium transporter, MgtC family compare
PP_4723 -2.7 -3.2 Carbamoyl-phosphate synthase large chain compare
PP_1214 -2.7 -3.4 putative transcriptional regulatory protein compare
PP_4799 -2.7 -1.8 putative Muramoyltetrapeptide carboxypeptidase compare
PP_4829 -2.7 -4.1 putative precorrin-3B synthase compare
PP_4620 -2.6 -6.8 Fumarylacetoacetase compare
PP_1237 -2.6 -2.0 4-hydroxy-tetrahydrodipicolinate synthase compare
PP_1912 -2.6 -4.6 Phosphate acyltransferase compare
PP_1232 -2.6 -6.5 conserved exported protein of unknown function compare
PP_4720 -2.6 -2.7 putative RNA binding protein compare
PP_1764 -2.6 -4.4 Phosphoglycolate phosphatase 2 compare
PP_1988 -2.6 -7.6 3-isopropylmalate dehydrogenase compare
PP_4045 -2.6 -3.0 conserved protein of unknown function compare
PP_2475 -2.6 -6.1 Transcriptional regulator, TetR family compare
PP_4892 -2.6 -7.4 integral membrane ATP-dependent zinc metallopeptidase / HflK-HflC complex compare
PP_4099 -2.5 -18.5 two-componenent system BarA/UvrY - regulatory subunit compare
PP_4701 -2.5 -1.1 glucose-6-phosphate isomerase compare
PP_0691 -2.5 -3.3 Glutamate 5-kinase compare
PP_0326 -2.5 -6.3 sarcosine oxidase subunit gamma compare
PP_5204 -2.5 -3.5 conserved protein of unknown function compare
PP_4058 -2.5 -10.0 1,4-alpha-glucan branching enzyme compare
PP_3505 -2.5 -3.0 conserved protein of unknown function compare
PP_5104 -2.5 -7.8 thiazole synthase compare
PP_0393 -2.5 -4.0 putative 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase compare
PP_2214 -2.5 -4.1 3-hydroxyacyl-CoA dehydrogenase type-2 compare
PP_5331 -2.5 -3.4 Long-chain acyl-CoA thioester hydrolase compare
PP_2378 -2.4 -3.6 Fe/S biogenesis protein NfuA compare
PP_2217 -2.4 -2.0 enoyl-CoA hydratase compare
PP_5139 -2.4 -4.2 cadmium translocating P-type ATPase conserved
PP_5058 -2.3 -6.4 Carboxy-terminal-processing protease compare
PP_4403 -2.3 -7.0 Lipoamide acyltransferase component of branched-chain alpha-keto acid dehydrogenase complex compare
PP_4400 -2.3 -4.2 Bkd operon transcriptional regulator compare
PP_0312 -2.3 -5.2 electron transfer flavoprotein, alpha subunit compare
PP_1719 -2.3 -9.3 Tail-specific protease prc compare
PP_1985 -2.3 -3.6 3-isopropylmalate dehydratase large subunit compare
PP_0916 -2.3 -2.2 Amino acid transporter LysE compare
PP_1650 -2.3 -17.1 Sensor protein GacS compare
PP_0310 -2.2 -8.2 putative dimethylglycine dehydrogenase subunit compare
PP_4964 -2.2 -5.1 D-erythrose 4-phosphate dehydrogenase compare
PP_5701 -2.2 -1.8 conserved protein of unknown function compare
PP_4891 -2.2 -4.0 integral membrane ATP-dependent zinc metallopeptidase / HflK-HflC complex compare
PP_0516 -2.2 -3.7 3,4-dihydroxy-2-butanone 4-phosphate synthase/GTP cyclohydrolase II compare
PP_0735 -2.2 -1.7 molybdopterin-synthase adenylyltransferase compare
PP_4268 -2.2 -1.6 nucleoid-associated broad specificity regulator compare
PP_5184 -2.2 -4.8 glutamylpolyamine synthetase compare
PP_2332 -2.2 -4.7 conserved exported protein of unknown function compare
PP_1783 -2.2 -2.9 dTDP-glucose pyrophosphorylase compare
PP_3506 -2.2 -3.2 Magnesium chelatase, subunit ChII compare
PP_4394 -2.1 -3.3 flagella basal body P-ring formation protein compare
PP_4475 -2.1 -5.2 succinylglutamate desuccinylase compare
PP_1128 -2.1 -4.0 OmpA family protein compare
PP_4050 -2.0 -9.8 glycogen synthase compare
PP_1623 -2.0 -6.7 RNA polymerase, sigma S (sigma 38) factor compare
PP_2337 -2.0 -2.4 aconitate isomerase compare
PP_4993 -2.0 -5.1 Glutathione synthetase compare
PP_1778 -2.0 -6.3 Lipopolysaccharide ABC export system, permease protein compare
PP_1672 -2.0 -5.5 cob(I)alamin adenolsyltransferase/cobinamide ATP-dependent adenolsyltransferase compare
PP_4247 -2.0 -1.8 Exonuclease compare
PP_2889 -1.9 -3.0 putative Transmembrane regulator PrtR compare
PP_3821 -1.9 -6.4 UTP-glucose-1-phosphate uridylyltransferase compare
PP_0058 -1.9 -6.4 putative 1-acyl-sn-glycerol-3-phosphate acyltransferase compare
PP_0673 -1.9 -1.3 conserved protein of unknown function compare
PP_1366 -1.9 -1.4 Transcriptional regulator MvaT, P16 subunit compare
PP_0214 -1.9 -5.3 4-aminobutyrate aminotransferase compare
PP_4254 -1.9 -1.3 conserved protein of unknown function compare
PP_0719 -1.9 -2.1 ribosome-associated potassium-dependent informational ATP/GTPase compare
PP_0311 -1.9 -4.9 putative dimethylglycine dehydrogenase subunit compare
PP_4895 -1.9 -4.1 tRNA dimethylallyltransferase compare
PP_5303 -1.8 -4.0 aminoacrylate/iminopropionate hydrolase/deaminase compare
PP_5054 -1.8 -2.1 glutaredoxin 3 compare
PP_2178 -1.8 -6.5 glutamate-putrescine ligase compare
PP_4273 -1.8 -1.5 Transcriptional regulator, MerR family compare
PP_4575 -1.8 -2.9 Urea amidolyase-related protein compare
PP_0065 -1.8 -3.7 NAD-binding component of TrK potassium transporter compare
PP_0962 -1.8 -3.1 toluene-tolerance protein compare
PP_5053 -1.8 -6.2 Protein-export protein SecB compare
PP_4009 -1.8 -3.3 ATP-dependent Clp protease adapter protein ClpS compare
PP_0111 -1.8 -6.4 Electron transport protein SCO1/SenC compare
PP_5017 -1.8 -1.2 Sec-independent protein translocase protein TatB compare
PP_0547 -1.8 -3.5 UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase compare
PP_2660 -1.7 -5.9 conserved protein of unknown function compare
PP_2309 -1.7 -1.3 conserved protein of unknown function compare
PP_1733 -1.7 -2.5 membrane ATPase of the MinC-MinD-MinE system compare
PP_4369 -1.7 -4.3 Flagellar M-ring protein compare
PP_3926 -1.7 -1.2 short-chain dehydrogenase compare
PP_3398 -1.7 -2.1 putative Curli fiber surface-exposed nucleator CsgB compare
PP_0949 -1.7 -5.3 putative ATP-binding protein UPF0042 compare
PP_4936 -1.7 -5.8 O-antigen polymerase compare
PP_5160 -1.7 -4.1 conserved exported protein of unknown function compare
PP_1779 -1.7 -5.7 Lipopolysaccharide ABC export system, ATP-binding protein compare
PP_3999 -1.7 -6.5 Uroporphyrinogen-III C-methyltransferase/Precorrin-2 dehydrogenase/Sirohydrochlorin ferrochelatase compare
PP_4004 -1.7 -2.9 DNA translocase FtsK compare
PP_3346 -1.7 -1.7 Nickel transporter ATP-binding protein compare
PP_0978 -1.7 -1.8 conserved protein of unknown function compare
PP_4402 -1.7 -6.4 branched-chain alpha-keto acid dehydrogenase complex, beta subunit compare
PP_1763 -1.6 -3.1 putative oxidoreductase compare
PP_1460 -1.6 -6.7 putative Membrane protein compare
PP_2215 -1.6 -3.3 acetyl-CoA acetyltransferase compare
PP_2046 -1.6 -3.0 Transcriptional regulator, LysR family compare
PP_1675 -1.6 -5.7 Subunit of adenosylcobinamide-phosphate synthase beta component compare
PP_5084 -1.6 -7.1 penicillin-insensitive transglycosylase/penicillin-sensitive transpeptidase compare
PP_4938 -1.6 -7.1 putative Glycosyl transferase compare
PP_4826 -1.6 -5.1 Precorrin-3B C17-methyltransferase compare
PP_4199 -1.6 -1.2 putative Lipoprotein compare
PP_0809 -1.6 -4.6 disulfide bond formation protein B compare
PP_0917 -1.6 -3.3 Chromosome initiation inhibitor compare
PP_2163 -1.6 -4.9 VacJ lipoprotein compare
PP_2070 -1.6 -1.8 Transcriptional regulator, AraC family compare
PP_3603 -1.6 -4.7 Transcriptional regulator, GntR family compare
PP_0980 -1.6 -4.9 Probable cytosol aminopeptidase compare
PP_3020 -1.6 -1.6 putative Serine/threonine protein phosphatase compare
PP_5155 -1.5 -3.2 D-3-phosphoglycerate dehydrogenase / alpha-ketoglutarate reductase compare
PP_4204 -1.5 -3.0 antitoxin of the type II toxin-antitoxin MqsRA system and DNA-binding transcriptional repressor compare
PP_3507 -1.5 -6.9 Aerobic cobaltochelatase subunit CobN compare
PP_5005 -1.5 -6.1 Poly(3-hydroxyalkanoate) polymerase 2 compare
PP_4344 -1.5 -5.9 flagellar export pore protein compare
PP_5347 -1.5 -5.9 pyruvate carboxylase subunit A compare
PP_3903 -1.5 -1.4 conserved protein of unknown function compare
PP_5583 -1.5 -1.9 conserved protein of unknown function compare
PP_4710 -1.5 -6.0 tRNA pseudouridine 55 synthase compare
PP_0958 -1.5 -5.1 phospholipid ABC transporter ATP-binding subunit compare
PP_0855 -1.5 -2.3 conserved protein of unknown function compare
PP_4832 -1.5 -3.5 Precorrin-6x reductase compare
PP_1217 -1.5 -3.1 Holliday junction ATP-dependent DNA helicase RuvB compare
PP_1824 -1.5 -1.4 Smr domain protein compare
PP_1999 -1.5 -2.1 membrane protein required for colicin V production compare
PP_2414 -1.5 -1.2 conserved exported protein of unknown function compare
PP_4532 -1.5 -1.6 ATP-dependent DEAD-box RNA helicase require for 50S ribosomal subunit biogenesis compare
PP_3034 -1.5 -2.1 putative Regulator protein compare
PP_3357 -1.5 -4.7 p-hydroxybenzaldehyde dehydrogenase vdh (EC 1.2.1.64) (from data) compare
PP_1678 -1.5 -2.2 bifunctional cobinamide-P guanylyltransferase - adenosylcobinamide kinase compare
PP_2331 -1.5 -3.7 conserved membrane protein of unknown function compare


Specific Phenotypes

For 36 genes in this experiment

For micoeukaryotes Pelleted after growth overnight in LB+Kan50 in Pseudomonas putida KT2440

For micoeukaryotes Pelleted after growth overnight in LB+Kan50 across organisms