Experiment set30IT059 for Pseudomonas putida KT2440

Compare to:

Acanthamoeba sp., muxed culture-1

200 most important genes:

  gene name fitness t score description  
PP_4994 -6.7 -6.5 conserved protein of unknown function compare
PP_2645 -5.6 -14.1 magnesium transporter, ATP-dependent compare
PP_0948 -5.3 -1.9 Phosphocarrier protein HPr compare
PP_4370 -4.8 -6.5 Flagellar hook-basal body complex protein FliE compare
PP_4804 -4.6 -3.2 RlpA-like lipoprotein compare
PP_4058 -4.6 -14.6 1,4-alpha-glucan branching enzyme compare
PP_0083 -4.5 -10.5 tryptophan synthase beta chain compare
PP_4008 -4.4 -10.6 ATP-dependent serine protease compare
PP_4902 -4.3 -4.2 Oligoribonuclease compare
PP_1734 -4.2 -5.0 Probable septum site-determining protein MinC compare
PP_4789 -4.2 -7.0 heat shock protein, Co2+ and Mg2+ efflux protein compare
PP_3244 -4.2 -7.0 Magnesium transporter, MgtC family compare
PP_1898 -4.1 -3.9 MotA/TolQ/ExbB proton channel family protein compare
PP_0422 -3.9 -8.8 Indole-3-glycerol phosphate synthase compare
PP_5145 -3.9 -19.9 phosphoenolpyruvate-dependent regulator (with NPR and NTR proteins) compare
PP_0719 -3.9 -3.8 ribosome-associated potassium-dependent informational ATP/GTPase compare
PP_0082 -3.9 -9.8 tryptophan synthase alpha chain compare
PP_3245 -3.8 -2.6 conserved protein of unknown function compare
PP_1224 -3.8 -6.2 periplasmic subunit of the TolQRA transport system compare
PP_1623 -3.7 -11.5 RNA polymerase, sigma S (sigma 38) factor compare
PP_5322 -3.7 -7.6 putative metal ion transporter compare
PP_2646 -3.5 -2.1 conserved protein of unknown function compare
PP_4999 -3.5 -2.4 dihydroorotase-like protein compare
PP_3946 -3.4 -2.3 HTH-type transcriptional repressor NicR compare
PP_0856 -3.4 -8.1 conserved lipoprotein of unknown function compare
PP_0959 -3.4 -3.7 phospholipid ABC transporter compare
PP_5045 -3.4 -7.0 tRNA sulfurtransferase compare
PP_4355 -3.3 -2.3 flagellar export apparatus subunit compare
PP_1995 -3.1 -8.5 N-(5'-phosphoribosyl)anthranilate isomerase compare
PP_1237 -3.1 -3.5 4-hydroxy-tetrahydrodipicolinate synthase compare
PP_0421 -3.1 -7.3 Anthranilate phosphoribosyltransferase compare
PP_4723 -3.1 -2.1 Carbamoyl-phosphate synthase large chain compare
PP_4342 -3.1 -5.3 flagellar synthesis regulator, putative ATPase compare
PP_1232 -3.1 -8.3 conserved exported protein of unknown function compare
PP_4895 -3.0 -5.7 tRNA dimethylallyltransferase compare
PP_1428 -3.0 -3.1 Sigma factor AlgU negative regulatory protein compare
PP_4365 -2.9 -4.6 Flagellar protein FliJ compare
PP_4799 -2.9 -2.0 putative Muramoyltetrapeptide carboxypeptidase compare
PP_0417 -2.9 -15.7 Anthranilate synthase component 1 compare
PP_4381 -2.8 -12.2 Flagellar hook-associated protein FlgK compare
PP_0960 -2.8 -7.0 phospholipid ABC transporter binding protein compare
PP_0127 -2.8 -6.0 Thiol:disulfide interchange protein compare
PP_0166 -2.7 -12.6 HlyD family secretion protein compare
PP_4693 -2.7 -6.8 RNA polymerase-binding transcription factor DksA compare
PP_4785 -2.7 -4.2 conserved exported protein of unknown function compare
PP_4964 -2.6 -5.6 D-erythrose 4-phosphate dehydrogenase compare
PP_0167 -2.6 -14.4 Toxin secretion ATP-binding protein compare
PP_0833 -2.6 -2.9 queuine tRNA-ribosyltransferase compare
PP_4366 -2.6 -10.0 flagellum-specific ATP synthase compare
PP_0961 -2.6 -8.1 toluene tolerance protein compare
PP_4519 -2.6 -13.0 Agglutination protein compare
PP_3098 -2.5 -1.6 conserved protein of unknown function compare
PP_0168 -2.5 -18.5 putative surface adhesion protein compare
PP_4684 -2.5 -7.9 conserved protein of unknown function with kinase-like domain compare
PP_5084 -2.5 -10.8 penicillin-insensitive transglycosylase/penicillin-sensitive transpeptidase compare
PP_4344 -2.4 -9.0 flagellar export pore protein compare
PP_4391 -2.4 -5.6 flagellar basal-body rod protein FlgB compare
PP_0725 -2.4 -5.9 conserved hypothetical TPR repeat protein compare
PP_0958 -2.4 -5.6 phospholipid ABC transporter ATP-binding subunit compare
PP_4375 -2.4 -9.4 flagellar chaperone, inhibits premature FliC assembly compare
PP_4382 -2.4 -6.9 Peptidoglycan hydrolase FlgJ compare
PP_1778 -2.3 -8.0 Lipopolysaccharide ABC export system, permease protein compare
PP_4724 -2.3 -3.7 Carbamoyl-phosphate synthase small chain compare
PP_0339 -2.3 -4.0 Pyruvate dehydrogenase E1 component compare
PP_4937 -2.2 -5.5 toluene tolerance protein compare
PP_0165 -2.2 -12.3 GGDEF domain protein compare
PP_1994 -2.1 -3.1 tRNA pseudouridine (38-40)synthase compare
PP_4376 -2.1 -9.6 flagellar filament capping protein compare
PP_1779 -2.1 -6.6 Lipopolysaccharide ABC export system, ATP-binding protein compare
PP_4356 -2.1 -2.6 Flagellar protein FliO compare
PP_4352 -2.1 -8.3 flagellin export apparatus, substrate specificity protein compare
PP_4388 -2.1 -9.9 Flagellar hook protein FlgE compare
PP_4380 -2.1 -10.9 Flagellar hook-associated protein FlgL compare
PP_4880 -2.1 -10.8 exoribonuclease R compare
PP_0691 -2.1 -2.3 Glutamate 5-kinase compare
PP_1325 -2.0 -7.8 putative lipoprotein compare
PP_4341 -2.0 -9.0 RNA polymerase sigma 28 (sigma F) factor for class III flagellar operons compare
PP_4353 -2.0 -4.7 Flagellar biosynthetic protein fliR compare
PP_0184 -2.0 -6.8 Argininosuccinate lyase compare
PP_0420 -2.0 -6.1 aminodeoxychorismate synthase / para-aminobenzoate synthase multi-enzyme complex compare
PP_0951 -2.0 -8.2 Ribosome hibernation promoting factor compare
PP_4383 -2.0 -2.7 Flagellar P-ring protein compare
PP_4385 -2.0 -5.7 flagellar basal-body rod protein FlgG compare
PP_4378 -2.0 -10.8 flagellin, filament structural protein compare
PP_4368 -2.0 -4.4 flagellar motor switch protein compare
PP_2820 -2.0 -3.1 HTH-type transcriptional regulator nfxB compare
PP_4384 -2.0 -7.5 Flagellar L-ring protein compare
PP_1215 -1.9 -2.9 Crossover junction endodeoxyribonuclease RuvC compare
PP_4265 -1.9 -2.8 DNA-binding transcriptional dual regulator compare
PP_4828 -1.9 -1.7 Precorrin-8X methylmutase compare
PP_5058 -1.9 -5.1 Carboxy-terminal-processing protease compare
PP_4361 -1.9 -3.4 Flagellar hook-length control protein FliK compare
PP_0809 -1.9 -7.2 disulfide bond formation protein B compare
PP_4726 -1.8 -2.1 Chaperone protein DnaJ compare
PP_5216 -1.8 -2.7 exopolyphosphatase compare
PP_5155 -1.8 -5.2 D-3-phosphoglycerate dehydrogenase / alpha-ketoglutarate reductase compare
PP_4390 -1.8 -6.9 flagellar basal-body rod protein FlgC compare
PP_5095 -1.8 -1.9 pyrroline-5-carboxylate reductase compare
PP_1410 -1.8 -1.8 conserved protein of unknown function compare
PP_4143 -1.8 -4.3 conserved protein of unknown function compare
PP_2144 -1.8 -3.4 Transcriptional regulator, TetR family compare
PP_4389 -1.8 -4.8 Flagellar basal-body rod modification protein FlgD compare
PP_4373 -1.8 -9.6 Transcriptional regulator FleQ compare
PP_2322 -1.8 -3.9 Major outer membrane lipoprotein compare
PP_1293 -1.8 -2.7 molybdopterin synthase small subunit compare
PP_4396 -1.8 -3.3 conserved protein of unknown function compare
PP_4354 -1.7 -2.5 flagellar export apparatus subunit compare
PP_0574 -1.7 -9.0 DNA-binding response regulator, LuxR family compare
PP_1733 -1.7 -2.5 membrane ATPase of the MinC-MinD-MinE system compare
PP_4386 -1.7 -4.8 flagellar basal-body rod protein FlgF compare
PP_4874 -1.7 -3.4 50S ribosomal protein L9 compare
PP_5331 -1.7 -4.5 Long-chain acyl-CoA thioester hydrolase compare
PP_1233 -1.7 -3.9 sulfurtransferase compare
PP_4004 -1.7 -4.3 DNA translocase FtsK compare
PP_0435 -1.6 -5.3 Peptidase, M23/M37 family compare
PP_3505 -1.6 -3.1 conserved protein of unknown function compare
PP_2000 -1.6 -3.0 amidophosphoribosyl transferase compare
PP_1468 -1.6 -4.0 Tyrosine recombinase XerD compare
PP_4098 -1.6 -3.1 UvrABC system protein C compare
PP_0914 -1.6 -6.1 GGDEF domain protein compare
PP_0872 -1.6 -5.2 Peptide chain release factor 3 compare
PP_2889 -1.6 -2.9 putative Transmembrane regulator PrtR compare
PP_0547 -1.6 -4.7 UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase compare
PP_2323 -1.5 -6.3 conserved protein of unknown function compare
PP_4891 -1.5 -5.0 integral membrane ATP-dependent zinc metallopeptidase / HflK-HflC complex compare
PP_5007 -1.5 -2.4 Polyhydroxyalkanoate granule-associated protein GA2 compare
PP_4782 -1.5 -4.4 Phosphomethylpyrimidine kinase compare
PP_4367 -1.5 -3.3 Flagellar assembly protein FliH compare
PP_1207 -1.5 -3.3 conserved protein of unknown function compare
PP_2163 -1.5 -5.0 VacJ lipoprotein compare
PP_1088 -1.5 -8.6 Argininosuccinate synthase compare
PP_3649 -1.4 -3.4 Transcriptional regulator, GntR family compare
PP_0832 -1.4 -4.1 S-adenosylmethionine:tRNA ribosyltransferase-isomerase compare
PP_4394 -1.4 -4.4 flagella basal body P-ring formation protein compare
PP_1783 -1.4 -3.1 dTDP-glucose pyrophosphorylase compare
PP_4369 -1.4 -4.2 Flagellar M-ring protein compare
PP_4993 -1.4 -3.4 Glutathione synthetase compare
PP_4938 -1.4 -7.6 putative Glycosyl transferase compare
PP_5628 -1.4 -3.1 conserved protein of unknown function compare
PP_4904 -1.4 -5.8 Flagellar motor rotation protein compare
PP_5104 -1.3 -6.8 thiazole synthase compare
PP_4944 -1.3 -4.2 Carbamoyltransferase compare
PP_0962 -1.3 -2.4 toluene-tolerance protein compare
PP_1217 -1.3 -3.7 Holliday junction ATP-dependent DNA helicase RuvB compare
PP_2299 -1.3 -3.4 Trigger factor compare
PP_4984 -1.3 -6.1 Adenosylmethionine-8-amino-7-oxononanoate aminotransferase compare
PP_1309 -1.3 -3.8 conserved exported protein of unknown function compare
PP_1719 -1.3 -6.6 Tail-specific protease prc compare
PP_4204 -1.3 -2.4 antitoxin of the type II toxin-antitoxin MqsRA system and DNA-binding transcriptional repressor compare
PP_0855 -1.3 -2.3 conserved protein of unknown function compare
PP_2378 -1.3 -2.1 Fe/S biogenesis protein NfuA compare
PP_4227 -1.3 -2.0 conserved protein of unknown function compare
PP_0274 -1.3 -2.0 putative transcriptional regulator containing HTH domain compare
PP_0697 -1.3 -6.5 ribosomal-protein-S18-alanine N-acetyltransferase compare
PP_4470 -1.2 -3.8 putative transcriptional regulator (Arc domain-containing) compare
PP_1384 -1.2 -5.5 Probable efflux pump outer membrane protein TtgC compare
PP_3773 -1.2 -2.2 conserved protein of unknown function compare
PP_0984 -1.2 -2.4 conserved membrane protein of unknown function compare
PP_4909 -1.2 -5.5 phosphoserine phosphatase compare
PP_4700 -1.2 -3.1 pantothenate synthetase compare
PP_0949 -1.2 -4.6 putative ATP-binding protein UPF0042 compare
PP_1663 -1.2 -5.5 conserved exported protein of unknown function compare
PP_4371 -1.2 -5.0 two component system AtoC DNA-binding transcriptional activator compare
PP_5090 -1.2 -1.7 putative cell division protein compare
PP_0794 -1.2 -4.2 1-phosphofructokinase monomer compare
PP_1935 -1.2 -2.2 Transcriptional regulator, Cro/CI family compare
PP_1048 -1.2 -1.8 putative protein secretion protein for export compare
PP_4358 -1.2 -4.6 flagellar synthesis, switching and energizing component compare
PP_4997 -1.2 -1.2 pyrimidine operon regulatory protein/uracil phosphoribosyltransferase compare
PP_4905 -1.2 -5.0 Flagellar motor rotation protein compare
PP_3286 -1.2 -3.5 DNA-binding transcriptional repressor PaaX(phenylacetyl-CoA) compare
PP_1763 -1.2 -2.7 putative oxidoreductase compare
PP_5295 -1.2 -1.7 conserved protein of unknown function compare
PP_4099 -1.2 -9.9 two-componenent system BarA/UvrY - regulatory subunit compare
PP_5051 -1.2 -1.3 conserved protein of unknown function compare
PP_2402 -1.1 -1.5 putative Sensor histidine kinase compare
PP_0365 -1.1 -5.8 Malonyl-[acyl-carrier protein] O-methyltransferase compare
PP_1348 -1.1 -4.5 putative MutT/nudix family protein/thiamine-phosphate pyrophosphorylase compare
PP_2379 -1.1 -3.6 putative cytochrome oxidase biogenesis protein compare
PP_4803 -1.1 -4.8 D-alanyl-D-alanine carboxypeptidase compare
PP_0363 -1.1 -6.4 8-amino-7-oxononanoate synthase compare
PP_0362 -1.1 -6.9 Biotin synthase compare
PP_5289 -1.1 -3.0 Acetylglutamate kinase compare
PP_4896 -1.1 -5.5 DNA mismatch repair protein MutL compare
PP_1912 -1.1 -2.4 Phosphate acyltransferase compare
PP_t29 -1.1 -1.2 tRNA-Ala compare
PP_3506 -1.1 -2.9 Magnesium chelatase, subunit ChII compare
PP_1860 -1.1 -3.4 Organic hydroperoxide resistance transcriptional regulator compare
PP_4892 -1.0 -3.6 integral membrane ATP-dependent zinc metallopeptidase / HflK-HflC complex compare
PP_5309 -1.0 -4.8 oxidative and nitrosative stress transcriptional dual regulator compare
PP_1650 -1.0 -9.3 Sensor protein GacS compare
PP_5185 -1.0 -5.3 acetylglutamate kinase-like protein (regulatory domain)/amino acid N-acetyltransferase compare
PP_1128 -1.0 -1.8 OmpA family protein compare
PP_5077 -1.0 -4.4 conserved protein of unknown function compare
PP_2087 -1.0 -3.0 CmpX protein compare
PP_4936 -1.0 -4.4 O-antigen polymerase compare
PP_2773 -1.0 -1.4 conserved protein of unknown function compare
PP_5311 -1.0 -5.3 putative signal transduction protein compare
PP_0672 -1.0 -6.6 Sensory box protein compare
PP_4699 -1.0 -2.6 3-methyl-2-oxobutanoate hydroxymethyltransferase compare


Specific Phenotypes

For 7 genes in this experiment

For micoeukaryotes Pelleted after growth overnight in LB+Kan50 in Pseudomonas putida KT2440

For micoeukaryotes Pelleted after growth overnight in LB+Kan50 across organisms