Experiment set30IT057 for Pseudomonas putida KT2440

Compare to:

C.elegans, mixed culture-1

200 most important genes:

  gene name fitness t score description  
PP_2646 -5.9 -4.7 conserved protein of unknown function compare
PP_0127 -5.7 -5.5 Thiol:disulfide interchange protein compare
PP_0916 -5.4 -4.3 Amino acid transporter LysE compare
PP_4994 -5.2 -7.8 conserved protein of unknown function compare
PP_2645 -5.0 -11.5 magnesium transporter, ATP-dependent compare
PP_0422 -4.9 -6.1 Indole-3-glycerol phosphate synthase compare
PP_4874 -4.6 -4.2 50S ribosomal protein L9 compare
PP_4370 -4.3 -4.8 Flagellar hook-basal body complex protein FliE compare
PP_0082 -4.3 -9.0 tryptophan synthase alpha chain compare
PP_4693 -4.3 -9.9 RNA polymerase-binding transcription factor DksA compare
PP_1215 -4.1 -3.2 Crossover junction endodeoxyribonuclease RuvC compare
PP_4143 -4.1 -4.9 conserved protein of unknown function compare
PP_4722 -4.1 -7.2 Transcription elongation factor GreA compare
PP_4804 -4.1 -4.0 RlpA-like lipoprotein compare
PP_4910 -4.1 -4.7 conserved protein of unknown function compare
PP_5322 -4.0 -9.7 putative metal ion transporter compare
PP_0856 -4.0 -8.8 conserved lipoprotein of unknown function compare
PP_0852 -4.0 -4.5 Transcriptional regulator, Cro/CI family compare
PP_1898 -3.9 -4.1 MotA/TolQ/ExbB proton channel family protein compare
PP_3244 -3.9 -4.1 Magnesium transporter, MgtC family compare
PP_0083 -3.9 -10.0 tryptophan synthase beta chain compare
PP_4902 -3.8 -5.2 Oligoribonuclease compare
PP_1764 -3.8 -5.2 Phosphoglycolate phosphatase 2 compare
PP_4726 -3.8 -3.2 Chaperone protein DnaJ compare
PP_5331 -3.8 -3.9 Long-chain acyl-CoA thioester hydrolase compare
PP_5114 -3.7 -4.3 putative adenine methyltransferase compare
PP_1986 -3.7 -3.8 3-isopropylmalate dehydratase small subunit compare
PP_0401 -3.7 -5.7 Ribosomal RNA small subunit methyltransferase A compare
PP_4260 -3.7 -6.2 conserved protein of unknown function compare
PP_1994 -3.7 -4.4 tRNA pseudouridine (38-40)synthase compare
PP_4789 -3.7 -6.6 heat shock protein, Co2+ and Mg2+ efflux protein compare
PP_4008 -3.6 -9.1 ATP-dependent serine protease compare
PP_2217 -3.6 -4.2 enoyl-CoA hydratase compare
PP_4356 -3.6 -2.8 Flagellar protein FliO compare
PP_4058 -3.6 -11.5 1,4-alpha-glucan branching enzyme compare
PP_5139 -3.6 -8.1 cadmium translocating P-type ATPase conserved
PP_5055 -3.5 -6.5 Sulfurtransferase compare
PP_2402 -3.5 -4.1 putative Sensor histidine kinase compare
PP_1623 -3.5 -9.7 RNA polymerase, sigma S (sigma 38) factor compare
PP_0959 -3.5 -3.7 phospholipid ABC transporter compare
PP_2144 -3.5 -5.8 Transcriptional regulator, TetR family compare
PP_0691 -3.5 -4.1 Glutamate 5-kinase compare
PP_4379 -3.5 -6.9 Beta-ketoacyl-acyl-carrier-protein synthase I compare
PP_4342 -3.5 -5.6 flagellar synthesis regulator, putative ATPase compare
PP_1763 -3.4 -5.3 putative oxidoreductase compare
PP_4396 -3.4 -4.9 conserved protein of unknown function compare
PP_4895 -3.4 -5.2 tRNA dimethylallyltransferase compare
PP_0393 -3.4 -5.3 putative 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase compare
PP_4999 -3.4 -2.3 dihydroorotase-like protein compare
PP_1733 -3.3 -5.0 membrane ATPase of the MinC-MinD-MinE system compare
PP_2378 -3.3 -4.5 Fe/S biogenesis protein NfuA compare
PP_4620 -3.3 -9.6 Fumarylacetoacetase compare
PP_0435 -3.3 -9.1 Peptidase, M23/M37 family compare
PP_0833 -3.2 -4.4 queuine tRNA-ribosyltransferase compare
PP_4353 -3.2 -5.2 Flagellar biosynthetic protein fliR compare
PP_1734 -3.2 -6.1 Probable septum site-determining protein MinC compare
PP_4909 -3.2 -9.7 phosphoserine phosphatase compare
PP_2337 -3.1 -4.2 aconitate isomerase compare
PP_0126 -3.1 -4.7 Cytochrome c4 compare
PP_3245 -3.1 -2.3 conserved protein of unknown function compare
PP_4383 -3.0 -3.9 Flagellar P-ring protein compare
PP_5095 -3.0 -2.2 pyrroline-5-carboxylate reductase compare
PP_1232 -3.0 -8.3 conserved exported protein of unknown function compare
PP_0417 -3.0 -16.3 Anthranilate synthase component 1 compare
PP_1995 -3.0 -7.9 N-(5'-phosphoribosyl)anthranilate isomerase compare
PP_4723 -2.9 -2.0 Carbamoyl-phosphate synthase large chain compare
PP_4517 -2.9 -2.5 conserved protein of unknown function compare
PP_0167 -2.9 -18.1 Toxin secretion ATP-binding protein compare
PP_0984 -2.9 -4.9 conserved membrane protein of unknown function compare
PP_5140 -2.8 -3.5 Transcriptional regulator, MerR family compare
PP_0719 -2.8 -3.3 ribosome-associated potassium-dependent informational ATP/GTPase compare
PP_4799 -2.8 -1.9 putative Muramoyltetrapeptide carboxypeptidase compare
PP_3649 -2.8 -5.7 Transcriptional regulator, GntR family compare
PP_4519 -2.8 -13.2 Agglutination protein compare
PP_0846 -2.7 -2.1 DnaK-like molecular chaperone specific for IscU compare
PP_0168 -2.7 -19.3 putative surface adhesion protein compare
PP_4803 -2.7 -7.6 D-alanyl-D-alanine carboxypeptidase compare
PP_0166 -2.7 -12.6 HlyD family secretion protein compare
PP_1206 -2.6 -7.6 basic-amino-acid specific porin OprD compare
PP_4481 -2.6 -8.8 Succinylornithine transaminase/acetylornithine aminotransferase compare
PP_1589 -2.6 -9.1 uridylyltransferase compare
PP_4880 -2.6 -11.6 exoribonuclease R compare
PP_0165 -2.6 -15.6 GGDEF domain protein compare
PP_0735 -2.6 -2.1 molybdopterin-synthase adenylyltransferase compare
PP_5232 -2.6 -3.2 conserved protein of unknown function compare
PP_1309 -2.6 -5.8 conserved exported protein of unknown function compare
PP_0421 -2.6 -8.2 Anthranilate phosphoribosyltransferase compare
PP_2330 -2.6 -4.9 conserved protein of unknown function compare
PP_4724 -2.6 -3.0 Carbamoyl-phosphate synthase small chain compare
PP_4679 -2.5 -7.5 acetohydroxybutanoate synthase / acetolactate synthase compare
PP_4354 -2.5 -3.7 flagellar export apparatus subunit compare
PP_1428 -2.5 -2.7 Sigma factor AlgU negative regulatory protein compare
PP_0420 -2.5 -9.0 aminodeoxychorismate synthase / para-aminobenzoate synthase multi-enzyme complex compare
PP_4355 -2.5 -2.0 flagellar export apparatus subunit compare
PP_4382 -2.5 -7.3 Peptidoglycan hydrolase FlgJ compare
PP_5155 -2.5 -4.0 D-3-phosphoglycerate dehydrogenase / alpha-ketoglutarate reductase compare
PP_2331 -2.5 -6.3 conserved membrane protein of unknown function compare
PP_4785 -2.5 -3.9 conserved exported protein of unknown function compare
PP_4050 -2.5 -13.9 glycogen synthase compare
PP_1988 -2.5 -6.0 3-isopropylmalate dehydrogenase compare
PP_0111 -2.5 -8.2 Electron transport protein SCO1/SenC compare
PP_4378 -2.5 -12.8 flagellin, filament structural protein compare
PP_4619 -2.4 -6.6 Maleylacetoacetate isomerase compare
PP_1233 -2.4 -6.0 sulfurtransferase compare
PP_2336 -2.4 -4.3 aconitate hydratase 1 compare
PP_3821 -2.4 -8.1 UTP-glucose-1-phosphate uridylyltransferase compare
PP_0949 -2.4 -8.0 putative ATP-binding protein UPF0042 compare
PP_4380 -2.4 -11.2 Flagellar hook-associated protein FlgL compare
PP_4386 -2.4 -5.6 flagellar basal-body rod protein FlgF compare
PP_4344 -2.4 -8.1 flagellar export pore protein compare
PP_0809 -2.4 -9.1 disulfide bond formation protein B compare
PP_4836 -2.4 -2.8 conserved exported protein of unknown function compare
PP_1912 -2.3 -5.8 Phosphate acyltransferase compare
PP_1985 -2.3 -3.3 3-isopropylmalate dehydratase large subunit compare
PP_4375 -2.3 -7.7 flagellar chaperone, inhibits premature FliC assembly compare
PP_4368 -2.3 -6.4 flagellar motor switch protein compare
PP_0674 -2.3 -8.8 ADP/ATP ratio sensor and inhibitor of translation compare
PP_4964 -2.2 -5.3 D-erythrose 4-phosphate dehydrogenase compare
PP_1318 -2.2 -6.0 Cytochrome b compare
PP_5104 -2.2 -6.2 thiazole synthase compare
PP_5128 -2.2 -9.3 Dihydroxy-acid dehydratase compare
PP_4262 -2.2 -2.5 Cytochrome oxidase maturation protein, cbb3-type compare
PP_4352 -2.2 -8.3 flagellin export apparatus, substrate specificity protein compare
PP_4099 -2.2 -16.0 two-componenent system BarA/UvrY - regulatory subunit compare
PP_4259 -2.2 -7.9 Iron-sulfur cluster-binding protein compare
PP_4385 -2.2 -3.9 flagellar basal-body rod protein FlgG compare
PP_5162 -2.2 -5.0 conserved exported protein of unknown function compare
PP_4475 -2.2 -6.3 succinylglutamate desuccinylase compare
PP_1128 -2.2 -3.7 OmpA family protein compare
PP_4365 -2.2 -3.1 Flagellar protein FliJ compare
PP_5748 -2.2 -1.7 cytochrome c heme lyase subunit compare
PP_4009 -2.1 -3.3 ATP-dependent Clp protease adapter protein ClpS compare
PP_4369 -2.1 -7.2 Flagellar M-ring protein compare
PP_0958 -2.1 -5.5 phospholipid ABC transporter ATP-binding subunit compare
PP_4006 -2.1 -9.1 Putative arginyl-tRNA--protein transferase compare
PP_4828 -2.1 -1.4 Precorrin-8X methylmutase compare
PP_4381 -2.1 -9.5 Flagellar hook-associated protein FlgK compare
PP_4384 -2.1 -6.7 Flagellar L-ring protein compare
PP_4678 -2.0 -8.4 Ketol-acid reductoisomerase compare
PP_1605 -2.0 -3.0 Ribonuclease HII compare
PP_4261 -2.0 -5.3 cation-transporting P-type ATPase compare
PP_1317 -2.0 -3.5 Ubiquinol-cytochrome c reductase iron-sulfur subunit compare
PP_1650 -2.0 -17.2 Sensor protein GacS compare
PP_5035 -2.0 -5.2 Histidine utilization repressor compare
PP_0725 -2.0 -5.8 conserved hypothetical TPR repeat protein compare
PP_4680 -2.0 -9.9 acetohydroxybutanoate synthase / acetolactate synthase compare
PP_4388 -2.0 -7.8 Flagellar hook protein FlgE compare
PP_4358 -2.0 -4.4 flagellar synthesis, switching and energizing component compare
PP_5216 -2.0 -2.9 exopolyphosphatase compare
PP_4470 -2.0 -2.4 putative transcriptional regulator (Arc domain-containing) compare
PP_0516 -2.0 -3.7 3,4-dihydroxy-2-butanone 4-phosphate synthase/GTP cyclohydrolase II compare
PP_4341 -2.0 -4.5 RNA polymerase sigma 28 (sigma F) factor for class III flagellar operons compare
PP_4480 -2.0 -6.2 arginine N-succinyltransferase, subunit alpha compare
PP_0832 -2.0 -5.3 S-adenosylmethionine:tRNA ribosyltransferase-isomerase compare
PP_4782 -2.0 -5.0 Phosphomethylpyrimidine kinase compare
PP_0406 -2.0 -3.1 Nucleotidyltransferase family protein compare
PP_1364 -2.0 -8.1 conserved exported protein of unknown function compare
PP_5283 -2.0 -7.0 periplasmic dipeptide transport protein compare
PP_4394 -2.0 -5.9 flagella basal body P-ring formation protein compare
PP_1669 -1.9 -5.1 NLP/P60 family protein compare
PP_2215 -1.9 -5.5 acetyl-CoA acetyltransferase compare
PP_5053 -1.9 -6.6 Protein-export protein SecB compare
PP_4391 -1.9 -5.9 flagellar basal-body rod protein FlgB compare
PP_2302 -1.9 -6.7 DNA-binding, ATP-dependent protease compare
PP_0888 -1.9 -2.7 Photosynthetic apparatus regulatory protein RegA compare
PP_5090 -1.9 -1.3 putative cell division protein compare
PP_3819 -1.9 -6.7 glutathione reductase (NADPH) compare
PP_0697 -1.9 -7.6 ribosomal-protein-S18-alanine N-acetyltransferase compare
PP_5058 -1.8 -5.1 Carboxy-terminal-processing protease compare
PP_1408 -1.8 -7.6 (R)-3-hydroxydecanoyl-ACP:CoA transacylase compare
PP_4367 -1.8 -3.3 Flagellar assembly protein FliH compare
PP_4891 -1.8 -5.4 integral membrane ATP-dependent zinc metallopeptidase / HflK-HflC complex compare
PP_4376 -1.8 -8.0 flagellar filament capping protein compare
PP_1460 -1.8 -8.4 putative Membrane protein compare
PP_1326 -1.8 -4.4 16S rRNA 2'-O-ribose C1402 methyltransferase compare
PP_0125 -1.8 -2.5 putative cytochrome c-type protein compare
PP_1217 -1.8 -3.5 Holliday junction ATP-dependent DNA helicase RuvB compare
PP_3365 -1.8 -1.4 Acetolactate synthase compare
PP_5204 -1.8 -2.8 conserved protein of unknown function compare
PP_5257 -1.7 -8.5 L-pipecolate oxidase compare
PP_2000 -1.7 -3.0 amidophosphoribosyl transferase compare
PP_0917 -1.7 -3.7 Chromosome initiation inhibitor compare
PP_0184 -1.7 -6.0 Argininosuccinate lyase compare
PP_5003 -1.7 -6.0 poly(3-hydroxyalkanoate) polymerase 1 compare
PP_0063 -1.7 -4.4 putative Lipid A biosynthesis lauroyl acyltransferase compare
PP_4098 -1.7 -3.3 UvrABC system protein C compare
PP_4361 -1.7 -4.0 Flagellar hook-length control protein FliK compare
PP_1719 -1.7 -7.2 Tail-specific protease prc compare
PP_2214 -1.7 -3.6 3-hydroxyacyl-CoA dehydrogenase type-2 compare
PP_4710 -1.7 -6.6 tRNA pseudouridine 55 synthase compare
PP_1237 -1.7 -2.3 4-hydroxy-tetrahydrodipicolinate synthase compare
PP_2345 -1.7 -3.5 conserved exported protein of unknown function compare
PP_2145 -1.7 -2.1 beta-N-acetylglucosaminidase compare
PP_2660 -1.6 -7.5 conserved protein of unknown function compare
PP_0789 -1.6 -4.9 N-acetyl-anhydromuramyl-L-alanine-amidase compare
PP_3596 -1.6 -5.2 D-lysine oxidase compare
PP_0058 -1.6 -6.6 putative 1-acyl-sn-glycerol-3-phosphate acyltransferase compare
PP_0261 -1.6 -6.7 adenosine-3'(2'),5'-bisphosphate nucleotidase compare
PP_0368 -1.6 -9.3 putative Acyl-CoA dehydrogenase compare
PP_5084 -1.6 -8.7 penicillin-insensitive transglycosylase/penicillin-sensitive transpeptidase compare


Specific Phenotypes

For 49 genes in this experiment

For micoeukaryotes Pelleted after growth overnight in LB+Kan50 in Pseudomonas putida KT2440

For micoeukaryotes Pelleted after growth overnight in LB+Kan50 across organisms