Experiment set30IT056 for Pseudomonas putida KT2440

Compare to:

Dictyostellum sp.mixed culture-2

200 most important genes:

  gene name fitness t score description  
PP_0846 -5.3 -3.0 DnaK-like molecular chaperone specific for IscU compare
PP_2645 -5.3 -14.0 magnesium transporter, ATP-dependent compare
PP_4994 -5.0 -6.6 conserved protein of unknown function compare
PP_0856 -4.7 -9.5 conserved lipoprotein of unknown function compare
PP_2646 -4.3 -4.5 conserved protein of unknown function compare
PP_0082 -4.3 -9.6 tryptophan synthase alpha chain compare
PP_4789 -4.3 -6.4 heat shock protein, Co2+ and Mg2+ efflux protein compare
PP_5322 -4.2 -9.6 putative metal ion transporter compare
PP_0833 -4.0 -3.9 queuine tRNA-ribosyltransferase compare
PP_4804 -3.8 -4.5 RlpA-like lipoprotein compare
PP_4143 -3.8 -3.3 conserved protein of unknown function compare
PP_4874 -3.7 -3.1 50S ribosomal protein L9 compare
PP_1232 -3.6 -9.9 conserved exported protein of unknown function compare
PP_0083 -3.6 -10.4 tryptophan synthase beta chain compare
PP_1898 -3.5 -4.6 MotA/TolQ/ExbB proton channel family protein compare
PP_4693 -3.5 -7.3 RNA polymerase-binding transcription factor DksA compare
PP_4902 -3.5 -5.6 Oligoribonuclease compare
PP_4999 -3.5 -2.4 dihydroorotase-like protein compare
PP_4008 -3.5 -10.7 ATP-dependent serine protease compare
PP_4379 -3.4 -6.8 Beta-ketoacyl-acyl-carrier-protein synthase I compare
PP_4342 -3.4 -5.7 flagellar synthesis regulator, putative ATPase compare
PP_5232 -3.3 -2.8 conserved protein of unknown function compare
PP_4724 -3.1 -2.1 Carbamoyl-phosphate synthase small chain compare
PP_4909 -3.1 -10.3 phosphoserine phosphatase compare
PP_0165 -3.0 -16.2 GGDEF domain protein compare
PP_0168 -3.0 -20.8 putative surface adhesion protein compare
PP_4895 -3.0 -5.7 tRNA dimethylallyltransferase compare
PP_4723 -3.0 -2.9 Carbamoyl-phosphate synthase large chain compare
PP_1128 -3.0 -5.7 OmpA family protein compare
PP_0422 -3.0 -6.2 Indole-3-glycerol phosphate synthase compare
PP_0916 -3.0 -3.1 Amino acid transporter LysE compare
PP_0852 -2.9 -4.5 Transcriptional regulator, Cro/CI family compare
PP_0166 -2.9 -13.8 HlyD family secretion protein compare
PP_4799 -2.9 -2.0 putative Muramoyltetrapeptide carboxypeptidase compare
PP_4519 -2.9 -13.3 Agglutination protein compare
PP_0834 -2.8 -2.6 Sec translocation complex subunit YajC compare
PP_4880 -2.8 -12.7 exoribonuclease R compare
PP_0167 -2.8 -15.0 Toxin secretion ATP-binding protein compare
PP_2337 -2.8 -4.1 aconitate isomerase compare
PP_4964 -2.7 -5.7 D-erythrose 4-phosphate dehydrogenase compare
PP_0417 -2.6 -16.5 Anthranilate synthase component 1 compare
PP_2217 -2.6 -4.1 enoyl-CoA hydratase compare
PP_4058 -2.6 -10.5 1,4-alpha-glucan branching enzyme compare
PP_2144 -2.4 -4.4 Transcriptional regulator, TetR family compare
PP_5331 -2.4 -4.0 Long-chain acyl-CoA thioester hydrolase compare
PP_0832 -2.4 -4.6 S-adenosylmethionine:tRNA ribosyltransferase-isomerase compare
PP_1995 -2.3 -8.0 N-(5'-phosphoribosyl)anthranilate isomerase compare
PP_0697 -2.3 -5.8 ribosomal-protein-S18-alanine N-acetyltransferase compare
PP_4722 -2.3 -4.4 Transcription elongation factor GreA compare
PP_2336 -2.3 -4.2 aconitate hydratase 1 compare
PP_5155 -2.3 -4.9 D-3-phosphoglycerate dehydrogenase / alpha-ketoglutarate reductase compare
PP_4470 -2.3 -4.7 putative transcriptional regulator (Arc domain-containing) compare
PP_0691 -2.2 -3.2 Glutamate 5-kinase compare
PP_0127 -2.2 -3.2 Thiol:disulfide interchange protein compare
PP_5104 -2.2 -9.5 thiazole synthase compare
PP_0725 -2.2 -5.9 conserved hypothetical TPR repeat protein compare
PP_1623 -2.2 -11.4 RNA polymerase, sigma S (sigma 38) factor compare
PP_2378 -2.2 -3.6 Fe/S biogenesis protein NfuA compare
PP_0421 -2.1 -7.6 Anthranilate phosphoribosyltransferase compare
PP_0888 -2.1 -4.3 Photosynthetic apparatus regulatory protein RegA compare
PP_3245 -2.1 -2.4 conserved protein of unknown function compare
PP_3244 -2.1 -3.6 Magnesium transporter, MgtC family compare
PP_1206 -2.1 -7.8 basic-amino-acid specific porin OprD compare
PP_3821 -2.1 -7.3 UTP-glucose-1-phosphate uridylyltransferase compare
PP_2000 -2.1 -3.6 amidophosphoribosyl transferase compare
PP_1428 -2.0 -2.8 Sigma factor AlgU negative regulatory protein compare
PP_0406 -2.0 -3.8 Nucleotidyltransferase family protein compare
PP_4099 -2.0 -15.2 two-componenent system BarA/UvrY - regulatory subunit compare
PP_5055 -2.0 -3.6 Sulfurtransferase compare
PP_2214 -2.0 -3.7 3-hydroxyacyl-CoA dehydrogenase type-2 compare
PP_4803 -2.0 -6.3 D-alanyl-D-alanine carboxypeptidase compare
PP_0435 -2.0 -7.1 Peptidase, M23/M37 family compare
PP_4353 -2.0 -5.3 Flagellar biosynthetic protein fliR compare
PP_4517 -1.9 -3.1 conserved protein of unknown function compare
PP_4260 -1.9 -4.6 conserved protein of unknown function compare
PP_1310 -1.9 -3.6 conserved hypothetical protein compare
PP_4098 -1.9 -3.1 UvrABC system protein C compare
PP_1985 -1.9 -6.2 3-isopropylmalate dehydratase large subunit compare
PP_1986 -1.9 -3.9 3-isopropylmalate dehydratase small subunit compare
PP_4356 -1.9 -2.7 Flagellar protein FliO compare
PP_1309 -1.9 -5.9 conserved exported protein of unknown function compare
PP_4620 -1.8 -5.6 Fumarylacetoacetase compare
PP_5058 -1.8 -6.0 Carboxy-terminal-processing protease compare
PP_4720 -1.8 -2.6 putative RNA binding protein compare
PP_5054 -1.8 -4.0 glutaredoxin 3 compare
PP_1650 -1.8 -14.8 Sensor protein GacS compare
PP_1734 -1.8 -2.9 Probable septum site-determining protein MinC compare
PP_0313 -1.8 -3.8 putative electron transfer flavoprotein beta subunit compare
PP_0719 -1.8 -2.3 ribosome-associated potassium-dependent informational ATP/GTPase compare
PP_1233 -1.7 -4.8 sulfurtransferase compare
PP_4354 -1.7 -2.9 flagellar export apparatus subunit compare
PP_1293 -1.7 -2.4 molybdopterin synthase small subunit compare
PP_4726 -1.7 -2.7 Chaperone protein DnaJ compare
PP_0393 -1.7 -3.3 putative 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase compare
PP_1994 -1.7 -3.0 tRNA pseudouridine (38-40)synthase compare
PP_2475 -1.7 -5.6 Transcriptional regulator, TetR family compare
PP_0961 -1.7 -6.1 toluene tolerance protein compare
PP_2568 -1.6 -1.5 Ring-cleaving dioxygenase compare
PP_4808 -1.6 -2.9 23S rRNA m3psi1915 methyltransferase compare
PP_0735 -1.6 -1.7 molybdopterin-synthase adenylyltransferase compare
PP_5283 -1.6 -6.7 periplasmic dipeptide transport protein compare
PP_4684 -1.6 -6.0 conserved protein of unknown function with kinase-like domain compare
PP_5084 -1.6 -8.6 penicillin-insensitive transglycosylase/penicillin-sensitive transpeptidase compare
PP_0420 -1.6 -7.2 aminodeoxychorismate synthase / para-aminobenzoate synthase multi-enzyme complex compare
PP_0809 -1.6 -5.3 disulfide bond formation protein B compare
PP_4829 -1.6 -2.4 putative precorrin-3B synthase compare
PP_4378 -1.6 -10.1 flagellin, filament structural protein compare
PP_4936 -1.6 -5.6 O-antigen polymerase compare
PP_5748 -1.5 -1.1 cytochrome c heme lyase subunit compare
PP_1764 -1.5 -3.4 Phosphoglycolate phosphatase 2 compare
PP_1589 -1.5 -6.2 uridylyltransferase compare
PP_2402 -1.5 -2.1 putative Sensor histidine kinase compare
PP_0111 -1.5 -5.3 Electron transport protein SCO1/SenC compare
PP_1325 -1.5 -6.5 putative lipoprotein compare
PP_0917 -1.5 -3.8 Chromosome initiation inhibitor compare
PP_4341 -1.5 -6.6 RNA polymerase sigma 28 (sigma F) factor for class III flagellar operons compare
PP_1460 -1.5 -7.4 putative Membrane protein compare
PP_4938 -1.5 -7.7 putative Glycosyl transferase compare
PP_4891 -1.5 -4.1 integral membrane ATP-dependent zinc metallopeptidase / HflK-HflC complex compare
PP_1733 -1.5 -2.4 membrane ATPase of the MinC-MinD-MinE system compare
PP_5582 -1.5 -1.5 conserved protein of unknown function compare
PP_5139 -1.5 -3.2 cadmium translocating P-type ATPase conserved
PP_4375 -1.5 -5.9 flagellar chaperone, inhibits premature FliC assembly compare
PP_4367 -1.4 -5.0 Flagellar assembly protein FliH compare
PP_0984 -1.4 -3.2 conserved membrane protein of unknown function compare
PP_4785 -1.4 -2.6 conserved exported protein of unknown function compare
PP_5053 -1.4 -5.5 Protein-export protein SecB compare
PP_4667 -1.4 -6.0 methylmalonate-semialdehyde dehydrogenase compare
PP_4344 -1.4 -8.1 flagellar export pore protein compare
PP_1999 -1.3 -2.2 membrane protein required for colicin V production compare
PP_0339 -1.3 -4.0 Pyruvate dehydrogenase E1 component compare
PP_4247 -1.3 -1.3 Exonuclease compare
PP_1237 -1.3 -2.3 4-hydroxy-tetrahydrodipicolinate synthase compare
PP_2152 -1.3 -1.8 glycerophosphoryl diester phosphodiesterase compare
PP_2145 -1.3 -2.5 beta-N-acetylglucosaminidase compare
PP_3603 -1.3 -4.1 Transcriptional regulator, GntR family compare
PP_1763 -1.3 -2.4 putative oxidoreductase compare
PP_3505 -1.3 -2.0 conserved protein of unknown function compare
PP_2660 -1.3 -6.8 conserved protein of unknown function compare
PP_t49 -1.3 -1.9 tRNA-Met compare
PP_3597 -1.3 -3.9 L-lysine and D-lysine ABC transporter, ATPase component (from data) compare
PP_4273 -1.3 -1.3 Transcriptional regulator, MerR family compare
PP_0872 -1.3 -6.1 Peptide chain release factor 3 compare
PP_4373 -1.3 -8.6 Transcriptional regulator FleQ compare
PP_0516 -1.3 -2.6 3,4-dihydroxy-2-butanone 4-phosphate synthase/GTP cyclohydrolase II compare
PP_1677 -1.3 -5.2 Adenosyl-cobyric acid synthase compare
PP_4966 -1.3 -2.1 transcriptional regulator of methionine metabolism compare
PP_4376 -1.3 -7.2 flagellar filament capping protein compare
PP_4381 -1.3 -7.9 Flagellar hook-associated protein FlgK compare
PP_4006 -1.3 -7.1 Putative arginyl-tRNA--protein transferase compare
PP_0960 -1.3 -5.1 phospholipid ABC transporter binding protein compare
PP_5338 -1.3 -2.8 aspartate ammonia-lyase compare
PP_4050 -1.3 -8.3 glycogen synthase compare
PP_4475 -1.2 -5.5 succinylglutamate desuccinylase compare
PP_0674 -1.2 -6.9 ADP/ATP ratio sensor and inhibitor of translation compare
PP_1113 -1.2 -6.2 Pyridoxal-phosphate dependent enzyme family protein compare
PP_3649 -1.2 -3.3 Transcriptional regulator, GntR family compare
PP_4009 -1.2 -2.2 ATP-dependent Clp protease adapter protein ClpS compare
PP_3693 -1.2 -3.0 putative Transcriptional regulator MvaT, P16 subunit compare
PP_1111 -1.2 -4.2 putative Synthetase compare
PP_4380 -1.2 -8.1 Flagellar hook-associated protein FlgL compare
PP_2794 -1.2 -1.4 Oxidoreductase, short chain dehydrogenase/reductase family compare
PP_1912 -1.2 -3.1 Phosphate acyltransferase compare
PP_0949 -1.2 -4.5 putative ATP-binding protein UPF0042 compare
PP_4262 -1.2 -1.8 Cytochrome oxidase maturation protein, cbb3-type compare
PP_4480 -1.2 -4.7 arginine N-succinyltransferase, subunit alpha compare
PP_5090 -1.2 -1.9 putative cell division protein compare
PP_4680 -1.2 -7.6 acetohydroxybutanoate synthase / acetolactate synthase compare
PP_2220 -1.2 -3.2 C4-type zinc finger protein, DksA/TraR family compare
PP_2330 -1.2 -2.7 conserved protein of unknown function compare
PP_0978 -1.2 -2.1 conserved protein of unknown function compare
PP_2889 -1.2 -4.1 putative Transmembrane regulator PrtR compare
PP_0585 -1.2 -2.3 putative metal-sensitive transcriptional regulator, MerR family compare
PP_4370 -1.2 -3.1 Flagellar hook-basal body complex protein FliE compare
PP_3427 -1.2 -2.9 Multidrug efflux RND outer membrane protein OprN compare
PP_2882 -1.2 -3.4 putative 2-hydroxychromene-2-carboxylate isomerase compare
PP_1217 -1.1 -3.4 Holliday junction ATP-dependent DNA helicase RuvB compare
PP_4937 -1.1 -3.3 toluene tolerance protein compare
PP_1872 -1.1 -5.7 glutamate-pyruvate aminotransferase compare
PP_1778 -1.1 -5.5 Lipopolysaccharide ABC export system, permease protein compare
PP_4532 -1.1 -2.2 ATP-dependent DEAD-box RNA helicase require for 50S ribosomal subunit biogenesis compare
PP_0058 -1.1 -6.4 putative 1-acyl-sn-glycerol-3-phosphate acyltransferase compare
PP_0126 -1.1 -2.1 Cytochrome c4 compare
PP_4368 -1.1 -3.4 flagellar motor switch protein compare
PP_5698 -1.1 -3.4 conserved exported protein of unknown function compare
PP_4355 -1.1 -1.4 flagellar export apparatus subunit compare
PP_3999 -1.1 -4.3 Uroporphyrinogen-III C-methyltransferase/Precorrin-2 dehydrogenase/Sirohydrochlorin ferrochelatase compare
PP_4481 -1.1 -3.9 Succinylornithine transaminase/acetylornithine aminotransferase compare
PP_1110 -1.1 -2.9 serine acetyltransferase compare
PP_5310 -1.1 -4.3 junction-specific ATP-dependent DNA helicase compare
PP_4390 -1.1 -4.6 flagellar basal-body rod protein FlgC compare
PP_5495 -1.1 -1.3 protein of unknown function compare
PP_1404 -1.1 -1.9 conserved protein of unknown function compare
PP_5658 -1.1 -2.1 protein of unknown function compare
PP_5257 -1.1 -5.6 L-pipecolate oxidase compare
PP_2883 -1.1 -1.3 conserved protein of unknown function compare
PP_4392 -1.1 -4.7 chemotaxis protein methyltransferase compare
PP_3243 -1.1 -3.0 Acetyltransferase, GNAT family compare
PP_4679 -1.1 -3.8 acetohydroxybutanoate synthase / acetolactate synthase compare
PP_4391 -1.1 -3.9 flagellar basal-body rod protein FlgB compare


Specific Phenotypes

For 26 genes in this experiment

For micoeukaryotes Pelleted after growth overnight in LB+Kan50 in Pseudomonas putida KT2440

For micoeukaryotes Pelleted after growth overnight in LB+Kan50 across organisms