Experiment set2TCH580 for Dickeya dianthicola ME23

Stem-Atlantic

Group: plant
Media: Potato stem + cv.Atlantic
Culturing: DdiaME23, Potato stem
By: Juliana Gonzalez-Tobon on 9/3/21

Specific Phenotypes

For 4 genes in this experiment

For plant cv.Atlantic in Dickeya dianthicola ME23

For plant cv.Atlantic across organisms

SEED Subsystems

Subsystem	#Specific
Nitrate and nitrite ammonification	2
Experimental tye	1
Heme and Siroheme Biosynthesis	1
Menaquinone and Phylloquinone Biosynthesis	1

Metabolic Maps

Color code by fitness: see overview map or list of maps.

Maps containing gene(s) with specific phenotypes:

• Ubiquinone and menaquinone biosynthesis
• Porphyrin and chlorophyll metabolism
• Nitrogen metabolism

MetaCyc Pathways

Pathways that contain genes with specific phenotypes:

Pathway	#Steps	#Present	#Specific
nitrate reduction VIIIb (dissimilatory)	2	2	1
NADH to nitrate electron transfer	2	2	1
nitrate reduction VIII (dissimilatory)	2	2	1
nitrate reduction IX (dissimilatory)	2	2	1
nitrate reduction III (dissimilatory)	2	2	1
heme b biosynthesis II (oxygen-independent)	4	4	1
superpathway of heme b biosynthesis from uroporphyrinogen-III	6	6	1
2-carboxy-1,4-naphthoquinol biosynthesis	7	7	1
superpathway of demethylmenaquinol-8 biosynthesis I	9	9	1
superpathway of demethylmenaquinol-6 biosynthesis I	9	8	1
superpathway of demethylmenaquinol-9 biosynthesis	9	8	1
3,8-divinyl-chlorophyllide a biosynthesis II (anaerobic)	9	3	1
superpathway of menaquinol-8 biosynthesis I	10	10	1
superpathway of menaquinol-6 biosynthesis	10	9	1
superpathway of menaquinol-9 biosynthesis	10	9	1
superpathway of menaquinol-12 biosynthesis	10	9	1
superpathway of menaquinol-7 biosynthesis	10	9	1
superpathway of menaquinol-13 biosynthesis	10	9	1
superpathway of menaquinol-11 biosynthesis	10	9	1
superpathway of menaquinol-10 biosynthesis	10	9	1
superpathway of phylloquinol biosynthesis	15	8	1
superpathway of bacteriochlorophyll a biosynthesis	26	6	1
superpathway of chorismate metabolism	59	54	1