Experiment set2TCH575 for Dickeya dianthicola ME23

Compare to:

Stem-Atlantic

200 most important genes:

  gene name fitness t score description  
DZA65_RS00800 -4.2 -2.9 O-antigen ligase family protein compare
DZA65_RS14015 -3.8 -11.9 flagellar basal body P-ring formation protein FlgA compare
DZA65_RS13880 -3.7 -6.1 flagellar export chaperone FliS compare
DZA65_RS15990 -3.6 -4.9 5-(carboxyamino)imidazole ribonucleotide mutase compare
DZA65_RS19655 -3.6 -3.7 adenylosuccinate synthase compare
DZA65_RS13930 -3.6 -17.3 flagellar motor switch protein FliM compare
DZA65_RS13935 -3.5 -8.0 flagellar motor switch protein FliN compare
DZA65_RS13925 -3.5 -15.4 flagellar basal body-associated protein FliL compare
DZA65_RS13940 -3.5 -13.6 flagellar biosynthetic protein FliO compare
DZA65_RS14035 -3.5 -19.7 flagellar biosynthesis protein FlhA compare
DZA65_RS14000 -3.5 -12.3 flagellar hook assembly protein FlgD compare
DZA65_RS16090 -3.4 -2.3 sulfurtransferase TusE compare
DZA65_RS10940 -3.4 -10.2 tryptophan synthase subunit alpha compare
DZA65_RS13885 -3.3 -9.0 flagellar protein FliT compare
DZA65_RS13905 -3.3 -12.5 flagellar assembly protein FliH compare
DZA65_RS13900 -3.3 -15.3 flagellar motor switch protein FliG compare
DZA65_RS13980 -3.2 -16.4 flagellar basal body L-ring protein FlgH compare
DZA65_RS13955 -3.2 -19.2 flagellar type III secretion system protein FliR compare
DZA65_RS14040 -3.2 -19.8 flagellar type III secretion system protein FlhB compare
DZA65_RS10945 -3.2 -10.8 tryptophan synthase subunit beta compare
DZA65_RS14055 -3.2 -12.7 chemotaxis response regulator protein-glutamate methylesterase compare
DZA65_RS13910 -3.2 -19.0 flagellum-specific ATP synthase FliI compare
DZA65_RS14025 -3.2 -6.3 flagella synthesis chaperone protein FlgN compare
DZA65_RS13950 -3.1 -13.3 flagellar biosynthesis protein FliQ compare
DZA65_RS10950 -3.1 -10.0 bifunctional indole-3-glycerol-phosphate synthase TrpC/phosphoribosylanthranilate isomerase TrpF compare
DZA65_RS13945 -3.1 -17.4 flagellar type III secretion system pore protein FliP compare
DZA65_RS14045 -3.1 -10.5 protein phosphatase CheZ compare
DZA65_RS13895 -3.1 -21.1 flagellar basal body M-ring protein FliF compare
DZA65_RS13835 -3.1 -9.7 RNA polymerase sigma factor FliA compare
DZA65_RS06470 -3.1 -7.6 phosphoribosylaminoimidazolesuccinocarboxamide synthase compare
DZA65_RS14095 -3.1 -12.2 flagellar transcriptional regulator FlhD compare
DZA65_RS13985 -3.1 -10.1 flagellar basal-body rod protein FlgG compare
DZA65_RS13915 -3.1 -13.1 flagella biosynthesis chaperone FliJ compare
DZA65_RS13870 -3.1 -9.8 flagellin compare
DZA65_RS13975 -3.1 -12.2 flagellar basal body P-ring protein FlgI compare
DZA65_RS03635 -3.0 -7.0 sugar transferase compare
DZA65_RS05310 -3.0 -8.7 thymidylate synthase compare
DZA65_RS10585 -3.0 -7.0 bifunctional 4-hydroxy-2-oxoglutarate aldolase/2-dehydro-3-deoxy-phosphogluconate aldolase compare
DZA65_RS13960 -3.0 -12.1 flagellar hook-filament junction protein FlgL compare
DZA65_RS13995 -3.0 -18.1 flagellar hook protein FlgE compare
DZA65_RS11720 -3.0 -6.1 2-dehydro-3-deoxy-D-gluconate 5-dehydrogenase KduD compare
DZA65_RS11270 -3.0 -16.9 virulence factor compare
DZA65_RS10955 -2.9 -3.5 anthranilate phosphoribosyltransferase compare
DZA65_RS10965 -2.9 -9.2 anthranilate synthase component 1 compare
DZA65_RS21825 -2.9 -15.7 sugar kinase compare
DZA65_RS13875 -2.9 -12.3 flagellar filament capping protein FliD compare
DZA65_RS03230 -2.9 -2.9 transcription termination/antitermination protein NusA compare
DZA65_RS16610 -2.9 -11.8 IMP dehydrogenase compare
DZA65_RS13990 -2.8 -10.4 flagellar basal body rod protein FlgF compare
DZA65_RS09455 -2.8 -6.9 DUF3413 domain-containing protein compare
DZA65_RS13970 -2.8 -11.6 flagellar assembly peptidoglycan hydrolase FlgJ compare
DZA65_RS13890 -2.8 -7.0 flagellar hook-basal body complex protein FliE compare
DZA65_RS01260 -2.8 -12.4 bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase compare
DZA65_RS13920 -2.8 -12.8 flagellar hook-length control protein FliK compare
DZA65_RS14075 -2.8 -17.8 chemotaxis protein CheA compare
DZA65_RS17690 -2.8 -11.9 glutamate-5-semialdehyde dehydrogenase compare
DZA65_RS00900 -2.7 -4.5 ATP-binding cassette domain-containing protein compare
DZA65_RS06420 -2.7 -11.5 phosphoribosylformylglycinamidine cyclo-ligase compare
DZA65_RS11265 -2.7 -18.5 virulence factor SrfB compare
DZA65_RS14050 -2.7 -8.0 chemotaxis protein CheY compare
DZA65_RS18160 -2.7 -2.5 glycerate kinase compare
DZA65_RS14070 -2.7 -7.8 chemotaxis protein CheW compare
DZA65_RS14090 -2.6 -15.0 flagellar transcriptional regulator FlhC compare
DZA65_RS14085 -2.6 -14.4 flagellar motor stator protein MotA compare
DZA65_RS14005 -2.6 -5.7 flagellar basal body rod protein FlgC compare
DZA65_RS20555 -2.6 -4.1 sulfurtransferase complex subunit TusD compare
DZA65_RS00350 -2.5 -2.9 hypothetical protein compare
DZA65_RS02490 -2.5 -8.6 phosphoserine phosphatase compare
DZA65_RS11565 -2.4 -5.9 disulfide bond formation protein DsbB compare
DZA65_RS14080 -2.4 -10.1 flagellar motor protein MotB compare
DZA65_RS13965 -2.4 -13.4 flagellar hook-associated protein FlgK compare
DZA65_RS14010 -2.4 -6.0 flagellar basal body rod protein FlgB compare
DZA65_RS22240 -2.3 -10.7 thiol:disulfide interchange protein DsbA compare
DZA65_RS20550 -2.3 -2.2 sulfurtransferase complex subunit TusC compare
DZA65_RS11260 -2.3 -9.7 hypothetical protein compare
DZA65_RS00790 -2.2 -2.9 glycosyltransferase family 4 protein compare
DZA65_RS21115 -2.2 -10.6 class I adenylate cyclase compare
DZA65_RS22145 -2.2 -2.1 DNA-directed RNA polymerase subunit omega compare
DZA65_RS15335 -2.2 -14.3 amidophosphoribosyltransferase compare
DZA65_RS16830 -2.2 -16.1 phosphoribosylformylglycinamidine synthase compare
DZA65_RS19540 -2.2 -7.1 phosphoglycerate dehydrogenase compare
DZA65_RS01350 -2.2 -2.0 DNA-binding transcriptional regulator Fis compare
DZA65_RS06895 -2.2 -4.6 Tol-Pal system protein TolQ compare
DZA65_RS10905 -2.1 -6.0 TonB system transport protein TonB compare
DZA65_RS17345 -2.1 -8.8 bifunctional chorismate mutase/prephenate dehydratase compare
DZA65_RS11865 -2.1 -3.6 tRNA 2-thiouridine(34) synthase MnmA compare
DZA65_RS00945 -2.1 -9.9 argininosuccinate lyase compare
DZA65_RS13750 -2.1 -9.3 glucans biosynthesis glucosyltransferase MdoH compare
DZA65_RS21800 -2.1 -2.7 DcrB family lipoprotein compare
DZA65_RS19740 -2.1 -7.8 ABC transporter ATP-binding protein compare
DZA65_RS01255 -2.0 -10.7 phosphoribosylamine--glycine ligase compare
DZA65_RS14060 -2.0 -9.6 protein-glutamate O-methyltransferase CheR compare
DZA65_RS06685 -2.0 -12.8 asparagine synthase B compare
DZA65_RS20775 -2.0 -2.2 DUF2531 family protein compare
DZA65_RS01370 -2.0 -2.5 YhdT family protein compare
DZA65_RS10915 -2.0 -6.1 septation protein A compare
DZA65_RS20875 -2.0 -2.7 Fe-S biogenesis protein NfuA compare
DZA65_RS19350 -2.0 -4.5 bis(5'-nucleosyl)-tetraphosphatase (symmetrical) compare
DZA65_RS07110 -2.0 -9.1 dTDP-glucose 4,6-dehydratase compare
DZA65_RS13755 -1.9 -6.3 glucan biosynthesis protein G compare
DZA65_RS19745 -1.9 -9.3 GDP-L-fucose synthase compare
DZA65_RS01525 -1.9 -4.2 LPS export ABC transporter periplasmic protein LptC compare
DZA65_RS10960 -1.9 -3.9 C26 family cysteine hydrolase domain-containing family compare
DZA65_RS00980 -1.9 -10.1 Sec-independent protein translocase subunit TatC compare
DZA65_RS10550 -1.9 -2.6 murein DD-endopeptidase MepM compare
DZA65_RS16710 -1.9 -2.4 iron-sulfur cluster assembly protein IscA compare
DZA65_RS22225 -1.9 -2.1 Der GTPase-activating protein YihI compare
DZA65_RS03670 -1.8 -4.2 kdo(2)-lipid IV(A) palmitoleoyltransferase compare
DZA65_RS06020 -1.8 -7.0 endopeptidase La compare
DZA65_RS15520 -1.8 -7.1 tRNA-Arg compare
DZA65_RS11390 -1.8 -5.9 tetratricopeptide repeat-containing protein compare
DZA65_RS22195 -1.8 -8.1 ribosome-dependent GTPase TypA compare
DZA65_RS17415 -1.8 -2.0 tRNA-Arg compare
DZA65_RS00355 -1.8 -10.7 argininosuccinate synthase compare
DZA65_RS01005 -1.7 -3.7 NAD(P)H-flavin reductase compare
DZA65_RS21090 -1.7 -1.6 tyrosine recombinase XerC compare
DZA65_RS18650 -1.7 -3.7 alanine racemase compare
DZA65_RS15370 -1.7 -4.8 tRNA pseudouridine(38-40) synthase TruA compare
DZA65_RS21790 -1.7 -2.5 sulfurtransferase TusA compare
DZA65_RS22210 -1.7 -8.9 nitrogen regulation protein NR(I) compare
DZA65_RS11655 -1.7 -9.8 TerC family protein compare
DZA65_RS19755 -1.7 -8.3 glycosyltransferase compare
DZA65_RS16715 -1.7 -1.3 Fe-S cluster assembly scaffold IscU compare
DZA65_RS01790 -1.7 -10.0 tol-pal system-associated acyl-CoA thioesterase compare
DZA65_RS15285 -1.7 -5.9 phosphate acetyltransferase compare
DZA65_RS13330 -1.7 -5.8 AI-2E family transporter YdiK compare
DZA65_RS19720 -1.7 -12.0 mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase compare
DZA65_RS02505 -1.7 -3.0 peptide chain release factor 3 compare
DZA65_RS22005 -1.7 -8.4 inorganic phosphate transporter PitA compare
DZA65_RS19735 -1.7 -4.4 ABC transporter permease compare
DZA65_RS20545 -1.7 -2.6 sulfurtransferase complex subunit TusB compare
DZA65_RS17695 -1.7 -3.4 glutamate 5-kinase compare
DZA65_RS03625 -1.6 -12.5 polysaccharide biosynthesis protein compare
DZA65_RS15995 -1.6 -6.8 5-(carboxyamino)imidazole ribonucleotide synthase compare
DZA65_RS16705 -1.6 -3.2 co-chaperone HscB compare
DZA65_RS07460 -1.6 -4.4 SDR family oxidoreductase compare
DZA65_RS01510 -1.6 -5.5 RNA polymerase factor sigma-54 compare
DZA65_RS19750 -1.5 -7.4 hypothetical protein compare
DZA65_RS19725 -1.5 -12.2 phosphomannomutase/phosphoglucomutase compare
DZA65_RS00640 -1.5 -9.1 hypothetical protein compare
DZA65_RS03465 -1.5 -3.3 FAD assembly factor SdhE compare
DZA65_RS19730 -1.5 -10.4 GDP-mannose 4,6-dehydratase compare
DZA65_RS00940 -1.5 -6.6 acetylglutamate kinase compare
DZA65_RS19385 -1.5 -7.5 glutamine-hydrolyzing carbamoyl-phosphate synthase small subunit compare
DZA65_RS03180 -1.5 -7.2 transcription elongation factor GreA compare
DZA65_RS02300 -1.5 -2.1 type-1Ba cytolytic delta-endotoxin compare
DZA65_RS11715 -1.4 -7.9 5-dehydro-4-deoxy-D-glucuronate isomerase compare
DZA65_RS10580 -1.4 -5.9 glucose-6-phosphate dehydrogenase compare
DZA65_RS19380 -1.4 -9.9 carbamoyl-phosphate synthase large subunit compare
DZA65_RS04355 -1.4 -8.5 phosphoenolpyruvate-protein phosphotransferase PtsI compare
DZA65_RS08120 -1.4 -5.7 iron ABC transporter permease compare
DZA65_RS06840 -1.4 -5.4 succinate dehydrogenase iron-sulfur subunit compare
DZA65_RS17330 -1.4 -4.4 23S rRNA pseudouridine(1911/1915/1917) synthase RluD compare
DZA65_RS06835 -1.4 -7.7 succinate dehydrogenase flavoprotein subunit compare
DZA65_RS16870 -1.4 -8.7 cyclic-guanylate-specific phosphodiesterase compare
DZA65_RS13850 -1.4 -9.0 Gfo/Idh/MocA family oxidoreductase compare
DZA65_RS22635 -1.4 -3.3 4-amino-4-deoxy-L-arabinose-phosphoundecaprenol flippase subunit ArnE compare
DZA65_RS13120 -1.3 -3.7 ribonuclease T compare
DZA65_RS14065 -1.3 -8.8 HAMP domain-containing protein compare
DZA65_RS16925 -1.3 -2.0 anti-sigma-E factor RseA compare
DZA65_RS00735 -1.3 -5.0 orotate phosphoribosyltransferase compare
DZA65_RS00360 -1.3 -4.8 MarR family transcriptional regulator compare
DZA65_RS02725 -1.3 -7.0 capsular polysaccharide biosynthesis protein compare
DZA65_RS10810 -1.3 -6.5 formyltetrahydrofolate deformylase compare
DZA65_RS22705 -1.3 -3.5 membrane protein insertion efficiency factor YidD compare
DZA65_RS03260 -1.3 -5.3 lipoprotein NlpI compare
DZA65_RS16910 -1.3 -5.8 elongation factor 4 compare
DZA65_RS11250 -1.3 -3.2 AprI/Inh family metalloprotease inhibitor compare
DZA65_RS18395 -1.3 -3.9 hypothetical protein compare
DZA65_RS21265 -1.2 -2.4 thioredoxin TrxA compare
DZA65_RS19665 -1.2 -3.2 protease modulator HflC compare
DZA65_RS05490 -1.2 -6.9 sigma E protease regulator RseP compare
DZA65_RS13840 -1.2 -7.4 hypothetical protein compare
DZA65_RS15580 -1.2 -5.8 enterochelin esterase compare
DZA65_RS11710 -1.2 -6.4 cupin domain-containing protein compare
DZA65_RS21110 -1.2 -3.3 iron donor protein CyaY compare
DZA65_RS01985 -1.2 -7.0 ornithine carbamoyltransferase compare
DZA65_RS11740 -1.2 -6.9 sn-glycerol-3-phosphate ABC transporter ATP-binding protein UgpC compare
DZA65_RS13435 -1.2 -7.3 porin compare
DZA65_RS21080 -1.2 -5.4 DNA helicase II compare
DZA65_RS05985 -1.2 -3.6 cytochrome o ubiquinol oxidase subunit II compare
DZA65_RS09910 -1.1 -3.2 thioredoxin-disulfide reductase compare
DZA65_RS13710 -1.1 -6.6 dihydroorotase compare
DZA65_RS04625 -1.1 -3.2 IS4 family transposase compare
DZA65_RS20605 -1.1 -6.8 peptidylprolyl isomerase compare
DZA65_RS19310 -1.1 -6.9 RNA polymerase-associated protein RapA compare
DZA65_RS00810 -1.1 -2.3 putative lipopolysaccharide heptosyltransferase III compare
DZA65_RS00935 -1.1 -6.1 N-acetyl-gamma-glutamyl-phosphate reductase compare
DZA65_RS08090 -1.1 -3.6 DHA2 family efflux MFS transporter permease subunit compare
DZA65_RS00420 -1.1 -5.4 FtsX-like permease family protein compare
DZA65_RS08130 -1.1 -6.1 ABC transporter ATP-binding protein compare
DZA65_RS16945 -1.1 -6.8 ATP-dependent RNA helicase SrmB compare
DZA65_RS21610 -1.1 -4.9 envelope stress response regulator transcription factor CpxR compare
DZA65_RS02305 -1.1 -5.5 type-2Aa cytolytic delta-endotoxin compare
DZA65_RS11845 -1.1 -8.1 EAL domain-containing protein compare
DZA65_RS08115 -1.1 -5.6 iron-siderophore ABC transporter substrate-binding protein compare
DZA65_RS10885 -1.1 -3.0 YciU family protein compare
DZA65_RS02940 -1.1 -4.2 DedA family protein compare
DZA65_RS15340 -1.1 -6.5 colicin V production protein compare
DZA65_RS05090 -1.0 -2.5 hypothetical protein compare


Specific Phenotypes

None in this experiment

For Dickeya dianthicola ME23 in plant experiments

For plant cv.Atlantic across organisms