Experiment set2S98 for Escherichia coli ECRC101

Compare to:

D-Glucose

200 most important genes:

  gene name fitness t score description  
MCAODC_01615 thrC -7.2 -5.0 threonine synthase compare
MCAODC_24775 aspC -6.3 -4.0 aspartate transaminase compare
MCAODC_24875 aroA -6.2 -13.9 3-phosphoshikimate 1-carboxyvinyltransferase compare
MCAODC_24685 pyrD -6.2 -8.9 quinone-dependent dihydroorotate dehydrogenase compare
MCAODC_13655 aroC -6.1 -4.2 chorismate synthase compare
MCAODC_07645 aroB -6.0 -8.2 3-dehydroquinate synthase compare
MCAODC_09980 serA -6.0 -16.8 phosphoglycerate dehydrogenase compare
MCAODC_02370 pyrB -5.9 -9.7 aspartate carbamoyltransferase compare
MCAODC_15715 pyrF -5.7 -4.0 orotidine-5'-phosphate decarboxylase compare
MCAODC_01715 serB -5.7 -9.6 phosphoserine phosphatase compare
MCAODC_00860 dksA -5.6 -9.6 RNA polymerase-binding protein DksA compare
MCAODC_24880 serC -5.6 -11.4 3-phosphoserine/phosphohydroxythreonine transaminase compare
MCAODC_12290 guaB -5.5 -3.8 IMP dehydrogenase compare
MCAODC_23090 pyrC -5.4 -7.2 dihydroorotase compare
MCAODC_01455 carB -5.3 -16.9 carbamoyl-phosphate synthase large subunit compare
MCAODC_01460 carA -5.3 -12.0 carbamoyl phosphate synthase small subunit compare
MCAODC_01620 thrB -5.2 -9.6 homoserine kinase compare
MCAODC_19980 -5.1 -1.3 PerC family transcriptional regulator compare
MCAODC_04330 pfkA -5.1 -3.0 6-phosphofructokinase compare
MCAODC_11755 pheA -5.1 -12.3 bifunctional chorismate mutase/prephenate dehydratase compare
MCAODC_00195 proB -5.0 -6.8 Glutamate 5-kinase compare
MCAODC_20435 hisB -4.9 -8.2 bifunctional histidinol-phosphatase/imidazoleglycerol-phosphate dehydratase HisB compare
MCAODC_02745 purA -4.9 -2.2 adenylosuccinate synthase compare
MCAODC_26040 tolQ -4.9 -2.8 Tol-Pal system protein TolQ compare
MCAODC_10470 lysA -4.8 -14.1 diaminopimelate decarboxylase compare
MCAODC_13720 accD -4.8 -1.7 acetyl-CoA carboxylase, carboxyltransferase subunit beta compare
MCAODC_10905 cysH -4.8 -7.1 phosphoadenosine phosphosulfate reductase compare
MCAODC_06110 pyrE -4.7 -8.7 Orotate phosphoribosyltransferase compare
MCAODC_01235 leuB -4.7 -12.9 3-isopropylmalate dehydrogenase compare
MCAODC_24855 ihfB -4.6 -2.5 integration host factor subunit beta compare
MCAODC_08085 aroE -4.6 -11.0 shikimate dehydrogenase compare
MCAODC_15610 trpE -4.6 -8.1 anthranilate synthase component I compare
MCAODC_04165 metF -4.5 -12.8 methylenetetrahydrofolate reductase compare
MCAODC_20430 hisC -4.5 -10.6 histidinol-phosphate transaminase compare
MCAODC_12340 purM -4.4 -7.9 Phosphoribosylformylglycinamidine cyclo-ligase compare
MCAODC_26145 sucA -4.4 -3.0 2-oxoglutarate dehydrogenase E1 component compare
MCAODC_24530 -4.4 -1.6 DUF1482 domain-containing protein compare
MCAODC_01245 leuD -4.3 -5.4 3-isopropylmalate dehydratase small subunit compare
MCAODC_12720 ptsI -4.2 -2.4 phosphoenolpyruvate-protein phosphotransferase PtsI compare
MCAODC_04175 metB -4.2 -12.3 cystathionine gamma-synthase compare
MCAODC_27835 proC -4.1 -4.9 pyrroline-5-carboxylate reductase compare
MCAODC_01240 leuC1 -4.1 -10.8 3-isopropylmalate dehydratase large subunit 1 compare
MCAODC_15600 trpCF -4.1 -7.2 bifunctional indole-3-glycerol-phosphate synthase TrpC/phosphoribosylanthranilate isomerase TrpF compare
MCAODC_15605 trpD -4.1 -8.4 bifunctional anthranilate synthase glutamate amidotransferase component TrpG/anthranilate phosphoribosyltransferase TrpD compare
MCAODC_04095 ppc -4.1 -13.6 phosphoenolpyruvate carboxylase conserved
MCAODC_20455 hisIE -4.1 -5.9 bifunctional phosphoribosyl-AMP cyclohydrolase/phosphoribosyl-ATP diphosphatase HisIE compare
MCAODC_10780 mazE -4.1 -1.5 type II toxin-antitoxin system antitoxin MazE compare
MCAODC_09475 metC -4.0 -11.1 cystathionine beta-lyase compare
MCAODC_00125 -4.0 -1.5 tail fiber assembly protein compare
MCAODC_10975 cysC -4.0 -10.0 Adenylyl-sulfate kinase compare
MCAODC_05140 ilvA -3.9 -10.7 threonine ammonia-lyase, biosynthetic compare
MCAODC_04830 metE -3.9 -16.2 5-methyltetrahydropteroyltriglutamate--homocystei ne S-methyltransferase conserved
MCAODC_00190 proA -3.9 -9.6 glutamate-5-semialdehyde dehydrogenase compare
MCAODC_08595 secG -3.9 -1.0 preprotein translocase subunit SecG compare
MCAODC_03775 metA -3.8 -8.3 homoserine O-succinyltransferase compare
MCAODC_01230 -3.8 -12.1 2-isopropylmalate synthase compare
MCAODC_21865 ldcA -3.8 -4.0 muramoyltetrapeptide carboxypeptidase compare
MCAODC_27055 purE -3.8 -3.8 N5-carboxyaminoimidazole ribonucleotide mutase compare
MCAODC_12460 purC -3.8 -8.8 phosphoribosylaminoimidazolesuccinocarboxamide synthase compare
MCAODC_17655 dmsD -3.7 -2.8 Tat proofreading chaperone DmsD compare
MCAODC_04835 metR -3.7 -11.1 HTH-type transcriptional regulator MetR conserved
MCAODC_26025 tolB -3.7 -8.8 Tol-Pal system protein TolB compare
MCAODC_20450 hisF -3.6 -4.2 Imidazole glycerol phosphate synthase subunit HisF compare
MCAODC_03810 purH -3.5 -12.4 bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase compare
MCAODC_27555 clpX -3.5 -2.4 ATP-dependent protease ATP-binding subunit ClpX compare
MCAODC_01625 thrA -3.5 -17.1 bifunctional aspartate kinase/homoserine dehydrogenase I compare
MCAODC_08610 argG -3.5 -8.2 argininosuccinate synthase compare
MCAODC_10465 lysR -3.5 -9.5 DNA-binding transcriptional regulator LysR compare
MCAODC_05150 ilvE -3.4 -10.8 branched-chain-amino-acid transaminase compare
MCAODC_05130 ilvC -3.3 -12.1 ketol-acid reductoisomerase compare
MCAODC_20835 -3.3 -1.9 tail fiber assembly protein compare
MCAODC_14170 nrdA -3.3 -2.1 ribonucleoside-diphosphate reductase subunit alpha compare
MCAODC_02340 argF -3.3 -10.2 ornithine carbamoyltransferase compare
MCAODC_00045 rusA -3.3 -1.7 crossover junction endodeoxyribonuclease RusA compare
MCAODC_10895 cysJ -3.3 -12.1 NADPH-dependent assimilatory sulfite reductase flavoprotein subunit compare
MCAODC_04080 -3.2 -8.2 acetylglutamate kinase compare
MCAODC_11955 pdxJ -3.2 -2.4 pyridoxine 5'-phosphate synthase compare
MCAODC_26140 odhB -3.1 -2.1 2-oxoglutarate dehydrogenase complex dihydrolipoyllysine-residue succinyltransferase compare
MCAODC_02550 cysQ -3.1 -6.8 3'(2'),5'-bisphosphate nucleotidase CysQ compare
MCAODC_13755 purF -3.0 -11.3 amidophosphoribosyltransferase compare
MCAODC_20425 hisD -3.0 -5.4 Histidinol dehydrogenase compare
MCAODC_10900 cysI -3.0 -7.4 assimilatory sulfite reductase (NADPH) hemoprotein subunit compare
MCAODC_12000 purL -2.9 -13.6 phosphoribosylformylglycinamidine synthase compare
MCAODC_12540 eutS -2.9 -1.1 Bacterial microcompartment shell protein EutS compare
MCAODC_01345 pdxA -2.9 -7.1 4-hydroxythreonine-4-phosphate dehydrogenase PdxA compare
MCAODC_05145 ilvD -2.9 -13.3 dihydroxy-acid dehydratase compare
MCAODC_04075 argH -2.9 -7.5 argininosuccinate lyase compare
MCAODC_06070 rpoZ -2.9 -1.8 DNA-directed RNA polymerase subunit omega compare
MCAODC_24965 lrp -2.8 -6.1 leucine-responsive transcriptional regulator Lrp compare
MCAODC_11750 tyrA -2.7 -10.3 bifunctional chorismate mutase/prephenate dehydrogenase compare
MCAODC_04085 argC -2.7 -7.0 N-acetyl-gamma-glutamyl-phosphate reductase compare
MCAODC_15595 trpB -2.7 -3.8 tryptophan synthase subunit beta compare
MCAODC_04090 argE -2.7 -11.0 acetylornithine deacetylase compare
MCAODC_08450 ptsN -2.7 -2.2 PTS IIA-like nitrogen regulatory protein PtsN compare
MCAODC_26180 gltA -2.7 -5.5 citrate synthase compare
MCAODC_25180 ybjN -2.7 -2.3 Uncharacterized protein YbjN compare
MCAODC_10965 cysD -2.7 -7.7 sulfate adenylyltransferase subunit CysD conserved
MCAODC_26030 tolA -2.7 -3.6 cell envelope integrity protein TolA compare
MCAODC_20190 -2.6 -1.3 hypothetical protein compare
MCAODC_07710 cysG -2.6 -7.5 siroheme synthase CysG compare
MCAODC_27560 clpP -2.6 -2.2 ATP-dependent Clp endopeptidase proteolytic subunit ClpP compare
MCAODC_10330 flhB -2.6 -1.3 EscU/YscU/HrcU family type III secretion system export apparatus switch protein compare
MCAODC_08660 pnp -2.6 -6.2 polyribonucleotide nucleotidyltransferase compare
MCAODC_15435 sopA -2.6 -1.8 plasmid-partitioning protein SopA compare
MCAODC_13700 pdxB -2.6 -6.3 4-phosphoerythronate dehydrogenase PdxB compare
MCAODC_03675 pgi -2.6 -9.7 glucose-6-phosphate isomerase compare
MCAODC_27060 purK -2.5 -5.4 5-(carboxyamino)imidazole ribonucleotide synthase compare
MCAODC_10585 argA -2.5 -7.1 amino-acid N-acetyltransferase compare
MCAODC_03815 purD -2.4 -6.4 Phosphoribosylamine--glycine ligase compare
MCAODC_12730 cysK -2.4 -8.3 cysteine synthase A compare
MCAODC_27545 -2.4 -5.6 Lon protease compare
MCAODC_19650 yedF -2.4 -3.1 sulfurtransferase-like selenium metabolism protein YedF compare
MCAODC_10075 sdhE -2.4 -1.4 FAD assembly factor SdhE compare
MCAODC_26810 fepG -2.3 -5.7 iron-enterobactin ABC transporter permease compare
MCAODC_25120 -2.3 -2.0 hypothetical protein compare
MCAODC_15590 trpA -2.3 -2.9 tryptophan synthase subunit alpha compare
MCAODC_15150 repA2 -2.3 -8.1 Replication regulatory protein repA2 compare
MCAODC_18215 aroD -2.3 -1.5 3-dehydroquinate dehydratase compare
MCAODC_24055 -2.2 -1.7 YccE compare
MCAODC_22380 -2.2 -2.3 head decoration protein compare
MCAODC_23585 -2.2 -1.0 Membrane protein compare
MCAODC_20215 ycdB -2.2 -1.5 putative transcriptional regulatory protein YcdB compare
MCAODC_10970 cysN -2.2 -7.9 sulfate adenylyltransferase subunit CysN conserved
MCAODC_01350 rsmA -2.1 -2.0 16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))-dimethyltransferase RsmA compare
MCAODC_05135 ilvY -2.1 -7.5 HTH-type transcriptional activator IlvY compare
MCAODC_01340 surA -2.0 -3.7 peptidylprolyl isomerase SurA compare
MCAODC_05995 -2.0 -0.9 toxin compare
MCAODC_20440 hisH -2.0 -1.8 imidazole glycerol phosphate synthase subunit HisH compare
MCAODC_10400 -2.0 -1.0 Putative uncharacterized protein YgeF compare
MCAODC_24120 -1.9 -1.6 Threonine-rich inner membrane protein GfcA compare
MCAODC_25980 nadA -1.9 -4.7 quinolinate synthase NadA compare
MCAODC_00920 panC -1.9 -7.2 pantoate--beta-alanine ligase conserved
MCAODC_18600 sIMPL -1.9 -1.8 SIMPL domain-containing protein compare
MCAODC_20445 hisA -1.9 -1.9 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)me thylideneamino]imidazole-4-carboxamide isomerase compare
MCAODC_16675 ydeM -1.8 -1.6 anaerobic sulfatase maturase compare
MCAODC_17675 ynfL -1.8 -1.7 Uncharacterized HTH-type transcriptional regulator YnfL compare
MCAODC_18560 nudG -1.8 -1.7 CTP pyrophosphohydrolase compare
MCAODC_22295 emrE -1.8 -1.0 multidrug efflux SMR transporter EmrE compare
MCAODC_09085 higA -1.8 -1.7 type II toxin-antitoxin system antitoxin HigA compare
MCAODC_13750 cvpA -1.8 -2.9 colicin V production protein compare
MCAODC_19155 nudB -1.8 -2.6 dihydroneopterin triphosphate diphosphatase compare
MCAODC_27385 ybaB -1.8 -1.5 YbaB/EbfC family nucleoid-associated protein compare
MCAODC_12685 cysT -1.8 -5.9 sulfate/thiosulfate ABC transporter permease CysT compare
MCAODC_13200 -1.8 -2.0 hypothetical protein compare
MCAODC_18940 prc -1.8 -5.7 carboxy terminal-processing peptidase compare
MCAODC_18440 chbA -1.7 -1.3 PTS N,N'-diacetylchitobiose transporter subunit IIA compare
MCAODC_07265 panM -1.7 -2.7 aspartate 1-decarboxylase autocleavage activator PanM conserved
MCAODC_20420 hisG -1.7 -3.3 ATP phosphoribosyltransferase compare
MCAODC_00915 panB -1.7 -5.5 3-methyl-2-oxobutanoate hydroxymethyltransferase conserved
MCAODC_15335 ehxC -1.7 -1.5 enterohemolysin-activating lysine-acyltransferase EhxC compare
MCAODC_19045 yebF -1.7 -1.3 Protein YebF compare
MCAODC_23825 acpS2 -1.7 -0.9 putative holo-[acyl-carrier-protein] synthase 2 compare
MCAODC_26830 ybdZ -1.6 -1.2 Enterobactin biosynthesis protein YbdZ compare
MCAODC_16435 yncG -1.6 -1.4 Uncharacterized GST-like protein YncG compare
MCAODC_26815 fepC -1.6 -2.0 ferrienterobactin ABC transporter ATPase compare
MCAODC_21925 ycgN -1.6 -1.9 YcgN family cysteine cluster protein compare
MCAODC_26020 pal -1.6 -2.2 peptidoglycan-associated lipoprotein Pal compare
MCAODC_22365 -1.6 -2.4 hypothetical protein compare
MCAODC_04600 glnA -1.6 -1.7 glutamate--ammonia ligase compare
MCAODC_25955 gpmA -1.6 -2.1 2,3-diphosphoglycerate-dependent phosphoglycerate mutase compare
MCAODC_12295 guaA -1.6 -1.6 glutamine-hydrolyzing GMP synthase compare
MCAODC_18125 lpp -1.5 -1.2 murein lipoprotein Lpp compare
MCAODC_24995 Ser_trna -1.5 -1.0 tRNA-Ser(gga) compare
MCAODC_04915 uvrD -1.5 -5.2 DNA helicase II compare
MCAODC_13925 nuoK -1.5 -1.0 NADH-quinone oxidoreductase subunit NuoK compare
MCAODC_26805 fepD -1.5 -4.5 ferrienterobactin ABC transporter permease compare
MCAODC_04170 metL -1.4 -6.1 bifunctional aspartate kinase/homoserine dehydrogenase II compare
MCAODC_26105 -1.4 -1.1 DUF4387 domain-containing protein compare
MCAODC_04240 hslU -1.4 -2.2 HslU--HslV peptidase ATPase subunit compare
MCAODC_21110 rcnR -1.4 -2.4 Ni(II)/Co(II)-binding transcriptional repressor RcnR compare
MCAODC_08130 Thr_trna -1.4 -0.7 tRNA-Thr(ggt) compare
MCAODC_18590 ydjA -1.4 -1.5 NAD(P)H nitroreductase compare
MCAODC_14810 bet -1.4 -1.5 phage recombination protein Bet compare
MCAODC_21850 ychF -1.4 -0.8 redox-regulated ATPase YchF compare
MCAODC_16415 mcbR -1.3 -1.7 colanic acid/biofilm transcriptional regulator McbR compare
MCAODC_17060 -1.3 -1.2 DUF1327 domain-containing protein compare
MCAODC_26065 cydA -1.3 -0.8 cytochrome ubiquinol oxidase subunit I compare
MCAODC_22520 rri1 -1.3 -1.4 phage tail protein compare
MCAODC_12455 -1.3 -0.7 hypothetical protein compare
MCAODC_24780 gloC -1.3 -1.6 hydroxyacylglutathione hydrolase GloC compare
MCAODC_25085 ybjQ -1.3 -1.2 UPF0145 protein YbjQ compare
MCAODC_23770 -1.3 -2.1 Outer membrane lipoprotein-sorting protein compare
MCAODC_20820 spoIVCA -1.3 -2.4 DNA-invertase compare
MCAODC_12690 cysW -1.2 -3.4 sulfate/thiosulfate ABC transporter permease CysW compare
MCAODC_26795 fepB -1.2 -4.4 ferrienterobactin ABC transporter periplasmic binding protein compare
MCAODC_18570 gdhA -1.2 -1.9 NADP-specific glutamate dehydrogenase compare
MCAODC_16490 nhoA -1.2 -1.9 N-hydroxyarylamine O-acetyltransferase compare
MCAODC_00930 panD -1.2 -3.0 aspartate 1-decarboxylase compare
MCAODC_10100 recJ -1.2 -4.4 single-stranded-DNA-specific exonuclease RecJ compare
MCAODC_05945 cesD2 -1.2 -1.2 LcrR family type III secretion system chaperone CesD2 compare
MCAODC_09335 cpdA -1.2 -6.1 3',5'-cyclic-AMP phosphodiesterase compare
MCAODC_23810 -1.2 -1.6 acyl carrier protein compare
MCAODC_16335 sutR -1.2 -1.6 DNA-binding transcriptional regulator SutR compare
MCAODC_12695 cysA -1.1 -3.2 sulfate/thiosulfate ABC transporter ATP-binding protein CysA compare
MCAODC_27440 tomB -1.1 -0.8 Hha toxicity modulator TomB compare
MCAODC_24355 -1.1 -1.7 SAR-endolysin compare
MCAODC_18410 ydjO -1.1 -1.3 Uncharacterized protein YdjO compare
MCAODC_19995 -1.1 -1.6 hypothetical protein compare
MCAODC_18470 cho -1.1 -1.6 excinuclease Cho compare
MCAODC_23410 -1.1 -1.0 Membrane protein compare


Specific Phenotypes

For 8 genes in this experiment

For carbon source D-Glucose in Escherichia coli ECRC101

For carbon source D-Glucose across organisms