Experiment set2S9 for Erwinia amylovora T8

Compare to:

Matrix:pear;Phage:Fifi044;Temp:28;Samp:13-5

200 most important genes:

  gene name fitness t score description  
OLJFJH_17720 -6.6 -5.3 Cys-tRNA(Pro)/Cys-tRNA(Cys) deacylase YbaK compare
OLJFJH_11280 -6.1 -8.3 amidophosphoribosyltransferase compare
OLJFJH_17635 -5.8 -9.0 5-(carboxyamino)imidazole ribonucleotide synthase compare
OLJFJH_05635 -5.3 -1.9 beta family protein compare
OLJFJH_10940 -5.3 -0.9 tRNA-Ala compare
OLJFJH_10170 -5.2 -1.6 outer membrane protein assembly factor BamE compare
OLJFJH_06785 -5.0 -14.1 bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase compare
OLJFJH_04910 -4.9 -0.9 hypothetical protein compare
OLJFJH_12050 -4.9 -2.6 Amylovoran biosynthesis glycosyltransferase AmsD compare
OLJFJH_03580 -4.8 -0.9 transcriptional repressor LexA compare
OLJFJH_10645 -4.8 -3.5 phosphoribosylaminoimidazolesuccinocarboxamide synthase compare
OLJFJH_01400 -4.5 -13.4 carbamoyl phosphate synthase small subunit compare
OLJFJH_00715 -4.4 -0.8 growth inhibitor PemK compare
OLJFJH_06780 -4.2 -12.6 phosphoribosylamine--glycine ligase compare
OLJFJH_10590 -4.2 -7.0 Phosphoribosylformylglycinamidine cyclo-ligase compare
OLJFJH_13330 -4.1 -1.7 gluconate 5-dehydrogenase compare
OLJFJH_05990 -4.1 -0.7 hypothetical protein compare
OLJFJH_17745 -4.0 -0.7 hypothetical protein compare
OLJFJH_14950 -3.8 -7.5 redox-regulated ATPase YchF compare
OLJFJH_01395 -3.7 -11.3 carbamoyl-phosphate synthase large subunit compare
OLJFJH_15555 -3.7 -1.3 23S rRNA accumulation protein YceD compare
OLJFJH_18305 -3.7 -0.9 cold-shock protein compare
OLJFJH_17650 -3.6 -0.6 ABC transporter ATP-binding protein compare
OLJFJH_17630 -3.6 -0.9 5-(carboxyamino)imidazole ribonucleotide mutase compare
OLJFJH_01900 -3.6 -1.9 type VI secretion system lipoprotein TssJ compare
OLJFJH_09390 -3.5 -0.6 Transposase compare
OLJFJH_17675 -3.5 -0.9 colicin immunity protein Cui compare
OLJFJH_05465 -3.4 -6.0 thiol:disulfide interchange protein DsbA compare
OLJFJH_10305 -3.4 -10.3 phosphoribosylformylglycinamidine synthase compare
OLJFJH_17550 -3.4 -0.8 hypothetical protein compare
OLJFJH_13120 -3.3 -1.3 septum site-determining protein MinC compare
OLJFJH_14445 -3.3 -3.5 Glycine zipper 2TM domain-containing protein compare
OLJFJH_08880 -3.3 -6.5 diaminopimelate decarboxylase compare
OLJFJH_03075 -3.2 -0.8 type VI secretion system lipoprotein TssJ compare
OLJFJH_07335 -3.2 -9.4 ornithine carbamoyltransferase compare
OLJFJH_00745 -3.1 -10.7 bifunctional glycosyl transferase/transpeptidase compare
OLJFJH_06270 -3.1 -3.0 thioredoxin TrxA compare
OLJFJH_13040 -3.1 -0.8 transcription antiterminator/RNA stability regulator CspE compare
OLJFJH_09575 -3.1 -2.1 recombinase RecA compare
OLJFJH_06480 -2.9 -9.3 5-methyltetrahydropteroyltriglutamate--homocysteine S-methyltransferase compare
OLJFJH_12075 -2.9 -6.9 Amylovoran biosynthesis protein AmsL compare
OLJFJH_07330 -2.9 -6.8 aspartate carbamoyltransferase compare
OLJFJH_05770 -2.8 -3.1 orotate phosphoribosyltransferase compare
OLJFJH_13570 -2.8 -5.5 orotidine-5'-phosphate decarboxylase compare
OLJFJH_11670 -2.8 -0.8 Tyrosine recombinase xerD compare
OLJFJH_03535 -2.7 -0.7 hypothetical protein compare
OLJFJH_12965 -2.7 -1.3 Lysine exporter LysO compare
OLJFJH_10500 -2.7 -3.6 IMP dehydrogenase compare
OLJFJH_07770 -2.6 -0.6 hypothetical protein compare
OLJFJH_16805 -2.6 -0.6 multidrug efflux pump-associated protein AcrZ family compare
OLJFJH_16040 -2.6 -8.6 Outer membrane porin OmpC/OmpF/PhoE compare
OLJFJH_13440 -2.6 -1.6 TonB system transport protein TonB compare
OLJFJH_09305 -2.6 -7.4 assimilatory sulfite reductase (NADPH) hemoprotein subunit compare
OLJFJH_15175 -2.6 -8.4 N-acetyl-gamma-glutamyl-phosphate reductase compare
OLJFJH_16950 -2.5 -1.5 2-oxoglutarate dehydrogenase E1 component compare
OLJFJH_09975 -2.5 -1.5 flagellar biosynthesis protein FliQ compare
OLJFJH_04030 -2.5 -9.0 bifunctional succinylornithine transaminase/acetylornithine transaminase compare
OLJFJH_15670 -2.5 -3.7 dihydroorotase compare
OLJFJH_06105 -2.5 -7.4 methylenetetrahydrofolate reductase compare
OLJFJH_15220 -2.4 -1.0 phage holin family protein compare
OLJFJH_05235 -2.4 -1.1 hypothetical protein compare
OLJFJH_07015 -2.4 -2.2 stringent starvation protein A compare
OLJFJH_10700 -2.4 -0.7 type IV secretion protein Rhs compare
OLJFJH_06515 -2.4 -0.8 twin-arginine translocase subunit TatA compare
OLJFJH_06130 -2.3 -9.0 argininosuccinate lyase compare
OLJFJH_15865 -2.3 -0.8 hypothetical protein compare
OLJFJH_09300 -2.3 -8.0 NADPH-dependent assimilatory sulfite reductase flavoprotein subunit compare
OLJFJH_15115 -2.3 -0.9 YgdI/YgdR family lipoprotein compare
OLJFJH_16180 -2.3 -5.2 cell division protein FtsK compare
OLJFJH_13805 -2.2 -2.2 DUF1318 domain-containing protein compare
OLJFJH_06115 -2.2 -6.0 acetylornithine deacetylase compare
OLJFJH_03695 -2.2 -1.1 DNA topoisomerase I ssDNA-binding Zn-finger and Zn-ribbon domains compare
OLJFJH_12930 -2.2 -1.7 DNA polymerase III subunit theta compare
OLJFJH_09590 -2.2 -1.4 carbon storage regulator CsrA compare
OLJFJH_12885 -2.2 -4.8 lauroyl-Kdo(2)-lipid IV(A) myristoyltransferase compare
OLJFJH_06125 -2.1 -7.5 argininosuccinate synthase compare
OLJFJH_10215 -2.1 -5.1 RNA polymerase sigma factor RpoE compare
OLJFJH_14060 -2.1 -3.4 ribonuclease inhibitor compare
OLJFJH_16780 -2.1 -2.7 6-phosphogluconolactonase compare
OLJFJH_09310 -2.1 -3.4 phosphoadenylyl-sulfate reductase compare
OLJFJH_16705 -2.1 -1.0 molybdopterin synthase catalytic subunit MoaE compare
OLJFJH_09430 -2.0 -0.9 type III secretion system inner rod subunit SctI compare
OLJFJH_14095 -2.0 -1.2 hypothetical protein compare
OLJFJH_15475 -2.0 -6.4 penicillin-binding protein activator LpoB compare
OLJFJH_10220 -2.0 -0.5 anti-sigma-E factor RseA compare
OLJFJH_16190 -2.0 -5.2 thioredoxin-disulfide reductase compare
OLJFJH_02245 -2.0 -1.1 YqjK-like family protein compare
OLJFJH_11240 -2.0 -4.3 tRNA pseudouridine(38-40) synthase TruA compare
OLJFJH_12670 -1.9 -5.2 flippase compare
OLJFJH_05470 -1.9 -1.0 DNA polymerase I compare
OLJFJH_13350 -1.9 -4.0 4-carboxy-4-hydroxy-2-oxoadipate aldolase/oxaloacetate decarboxylase compare
OLJFJH_01370 -1.9 -1.6 16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))-dimethyltransferase RsmA compare
OLJFJH_04155 -1.9 -3.0 two-component system sensor histidine kinase EnvZ compare
OLJFJH_06525 -1.9 -1.3 Sec-independent protein translocase subunit TatC compare
OLJFJH_10465 -1.9 -1.1 outer membrane protein assembly factor BamB compare
OLJFJH_03650 -1.9 -8.2 homoserine O-succinyltransferase compare
OLJFJH_16900 -1.9 -3.6 cell division protein CpoB compare
OLJFJH_06640 -1.8 -2.2 elongation factor Tu compare
OLJFJH_10850 -1.8 -1.9 PTS glucose transporter subunit IIA compare
OLJFJH_18015 -1.8 -2.9 cytochrome o ubiquinol oxidase subunit III compare
OLJFJH_06055 -1.8 -1.0 ribonuclease E activity regulator RraA compare
OLJFJH_07275 -1.7 -2.3 DEAD/DEAH family ATP-dependent RNA helicase compare
OLJFJH_03055 -1.7 -1.3 hypothetical protein compare
OLJFJH_18380 -1.7 -0.4 anti-adapter protein IraP compare
OLJFJH_10200 -1.7 -3.6 ATP-dependent RNA helicase SrmB compare
OLJFJH_10740 -1.7 -0.7 protein YpfM compare
OLJFJH_02610 -1.7 -2.1 exclusion suppressor FxsA compare
OLJFJH_16980 -1.7 -6.7 citrate synthase compare
OLJFJH_09115 -1.7 -5.7 amino-acid N-acetyltransferase compare
OLJFJH_13430 -1.7 -5.3 cardiolipin synthase ClsA compare
OLJFJH_14925 -1.7 -0.6 hypothetical protein compare
OLJFJH_15725 -1.7 -4.1 glucan biosynthesis protein G compare
OLJFJH_11090 -1.7 -1.5 heme exporter protein CcmD compare
OLJFJH_16820 -1.6 -2.5 galactose-1-phosphate uridylyltransferase compare
OLJFJH_05935 -1.6 -2.8 envelope stress response regulator transcription factor CpxR compare
OLJFJH_12070 -1.6 -3.8 Amylovoran biosynthesis glycosyltransferase AmsK compare
OLJFJH_17880 -1.6 -0.9 transcriptional regulator compare
OLJFJH_03965 -1.6 -6.8 ABC transporter ATP-binding protein compare
OLJFJH_14120 -1.6 -1.0 hypothetical protein compare
OLJFJH_07160 -1.6 -1.1 hypothetical protein compare
OLJFJH_07060 -1.6 -2.2 PTS IIA-like nitrogen regulatory protein PtsN compare
OLJFJH_15990 -1.6 -3.2 quinone-dependent dihydroorotate dehydrogenase compare
OLJFJH_09625 -1.6 -4.7 glutamate--cysteine ligase compare
OLJFJH_05510 -1.6 -3.5 ribosome-dependent GTPase TypA compare
OLJFJH_09105 -1.6 -2.5 exodeoxyribonuclease V subunit alpha compare
OLJFJH_10585 -1.6 -6.2 phosphoribosylglycinamide formyltransferase compare
OLJFJH_03710 -1.6 -0.4 peptide deformylase compare
OLJFJH_13345 -1.6 -1.6 4-oxalomesaconate tautomerase compare
OLJFJH_06985 -1.5 -5.3 outer membrane-stress sensor serine endopeptidase DegS compare
OLJFJH_12850 -1.5 -1.1 crossover junction endodeoxyribonuclease RuvC compare
OLJFJH_13880 -1.5 -1.7 two-component system response regulator RstA compare
OLJFJH_13530 -1.5 -1.1 HTH-type transcriptional regulator CysB compare
OLJFJH_10485 -1.5 -2.3 Emfourin compare
OLJFJH_16350 -1.5 -2.6 PAP2 superfamily compare
OLJFJH_15700 -1.5 -1.8 rhodanese-related sulfurtransferase compare
OLJFJH_12040 -1.5 -1.8 Amylovoran biosynthesis glycosyltransferase AmsB compare
OLJFJH_09335 -1.5 -3.6 Adenylyl-sulfate kinase compare
OLJFJH_12275 -1.5 -1.5 AsnC family transcriptional regulator compare
OLJFJH_06095 -1.5 -4.7 cystathionine gamma-synthase compare
OLJFJH_02085 -1.5 -1.0 transcriptional regulator GutM compare
OLJFJH_08955 -1.5 -2.0 endoribonuclease SymE compare
OLJFJH_09245 -1.4 -7.1 GTP diphosphokinase compare
OLJFJH_02695 -1.4 -1.1 hypothetical protein compare
OLJFJH_12495 -1.4 -3.1 hypothetical protein compare
OLJFJH_04160 -1.4 -2.5 two-component system response regulator OmpR compare
OLJFJH_14450 -1.4 -2.0 transcriptional regulator SlyA compare
OLJFJH_15720 -1.4 -6.5 glucan biosynthesis glucosyltransferase H compare
OLJFJH_13240 -1.4 -2.7 asparaginase compare
OLJFJH_07070 -1.4 -3.8 RNA polymerase factor sigma-54 compare
OLJFJH_15235 -1.4 -1.0 Putative glycosyl transferase compare
OLJFJH_02505 -1.4 -3.6 tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA compare
OLJFJH_01375 -1.4 -2.9 Co2+/Mg2+ efflux protein ApaG compare
OLJFJH_16055 -1.4 -1.5 DUF882 domain-containing protein compare
OLJFJH_03550 -1.4 -1.2 pyocin activator protein PrtN compare
OLJFJH_18580 -1.4 -2.2 oxalurate catabolism protein HpxZ compare
OLJFJH_07125 -1.4 -1.5 lipid asymmetry maintenance protein MlaB compare
OLJFJH_16640 -1.4 -1.5 hypothetical protein compare
OLJFJH_08400 -1.4 -0.9 hypothetical protein compare
OLJFJH_01420 -1.3 -0.8 signal peptidase II compare
OLJFJH_16965 -1.3 -1.9 succinate dehydrogenase membrane anchor subunit compare
OLJFJH_16465 -1.3 -1.3 glutamine ABC transporter ATP-binding protein GlnQ compare
OLJFJH_12160 -1.3 -0.5 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino]imidazole-4-carboxamide isomerase compare
OLJFJH_06415 -1.3 -3.2 tyrosine recombinase XerC compare
OLJFJH_10245 -1.3 -2.2 translation elongation factor 4 compare
OLJFJH_00775 -1.3 -3.0 polynucleotide adenylyltransferase PcnB compare
OLJFJH_16365 -1.3 -4.6 glutathione ABC transporter permease GsiD compare
OLJFJH_05215 -1.3 -4.4 phosphate ABC transporter ATP-binding protein PstB compare
OLJFJH_17010 -1.3 -1.6 UPF0135 protein ybgI compare
OLJFJH_15945 -1.3 -2.7 Lon protease compare
OLJFJH_05105 -1.3 -4.8 glyoxylate/hydroxypyruvate reductase GhrB compare
OLJFJH_07055 -1.3 -4.0 RNase adapter RapZ compare
OLJFJH_09960 -1.3 -3.3 flagellar motor switch protein FliN compare
OLJFJH_13015 -1.3 -2.6 protease HtpX compare
OLJFJH_06260 -1.3 -2.1 exopolyphosphatase compare
OLJFJH_09320 -1.3 -4.4 siroheme synthase CysG compare
OLJFJH_01445 -1.3 -2.2 hypothetical protein compare
OLJFJH_01490 -1.3 -3.9 homoserine kinase compare
OLJFJH_00675 -1.3 -1.3 hypothetical protein compare
OLJFJH_02740 -1.3 -2.0 hypothetical protein compare
OLJFJH_14225 -1.3 -2.5 hypothetical protein compare
OLJFJH_06120 -1.3 -2.1 acetylglutamate kinase compare
OLJFJH_01380 -1.3 -2.7 bis(5'-nucleosyl)-tetraphosphatase (symmetrical) ApaH compare
OLJFJH_18630 -1.2 -0.5 ribonuclease HI compare
OLJFJH_09330 -1.2 -4.6 sulfate adenylyltransferase subunit CysN compare
OLJFJH_08610 -1.2 -2.3 agmatinase compare
OLJFJH_15680 -1.2 -1.7 biofilm formation regulator BssS compare
OLJFJH_09325 -1.2 -3.6 sulfate adenylyltransferase subunit CysD compare
OLJFJH_04080 -1.2 -1.9 adenine-specific DNA-methyltransferase compare
OLJFJH_10115 -1.2 -1.1 flagellar transcriptional regulator FlhC compare
OLJFJH_09065 -1.2 -0.7 thymidylate synthase compare
OLJFJH_04620 -1.2 -0.5 Inversin compare
OLJFJH_04945 -1.2 -1.5 hypothetical protein compare
OLJFJH_11320 -1.2 -0.5 Uncharacterized GST-like protein yfcF compare
OLJFJH_05895 -1.2 -3.6 murein hydrolase activator EnvC compare
OLJFJH_02110 -1.2 -1.2 hypothetical protein compare
OLJFJH_13115 -1.2 -1.3 septum site-determining protein MinD compare
OLJFJH_15350 -1.2 -1.9 flagellar hook-basal body complex protein FliE compare
OLJFJH_01690 -1.2 -2.4 Ferric aerobactin receptor compare
OLJFJH_16675 -1.2 -2.8 L D-transpeptidase compare
OLJFJH_12845 -1.2 -1.9 YebC/PmpR family DNA-binding transcriptional regulator compare


Specific Phenotypes

For 1 genes in this experiment