Experiment set2S9 for Brevundimonas sp. GW460-12-10-14-LB2

Compare to:

Cytidine 0.41115 mM carbon source

200 most important genes:

  gene name fitness t score description  
A4249_RS07910 -5.0 -3.4 2-hydroxyacid dehydrogenase compare
A4249_RS07610 -2.8 -1.9 methyltransferase type 11 compare
A4249_RS02325 -2.1 -2.0 23S ribosomal RNA compare
A4249_RS12470 -2.0 -1.9 histidinol-phosphatase compare
A4249_RS07050 -1.8 -2.1 hypothetical protein compare
A4249_RS11720 -1.8 -1.7 strawberry notch C-terminal domain-containing protein compare
A4249_RS17075 -1.6 -1.5 energy transducer TonB compare
A4249_RS03845 -1.6 -3.0 TerC family protein compare
A4249_RS06230 -1.6 -1.9 OmpH family outer membrane protein compare
A4249_RS04490 -1.6 -2.1 cobaltochelatase subunit CobS compare
A4249_RS07995 -1.6 -1.8 type II 3-dehydroquinate dehydratase compare
A4249_RS12085 -1.5 -2.1 DUF883 family protein compare
A4249_RS04345 -1.5 -3.7 glycosyltransferase family A protein compare
A4249_RS08300 -1.5 -1.7 cold-shock protein compare
A4249_RS04475 -1.5 -1.9 response regulator transcription factor compare
A4249_RS09210 -1.4 -1.8 hypothetical protein compare
A4249_RS08285 -1.4 -1.7 preQ(1) synthase compare
A4249_RS13195 -1.3 -3.1 alpha-ketoacid dehydrogenase subunit beta compare
A4249_RS04620 -1.2 -2.0 hypothetical protein compare
A4249_RS10390 -1.2 -1.8 translation elongation factor 4 compare
A4249_RS04215 -1.2 -1.8 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD compare
A4249_RS05620 -1.2 -3.0 D-glycero-beta-D-manno-heptose 1-phosphate adenylyltransferase compare
A4249_RS13125 -1.2 -1.9 ribonuclease PH compare
A4249_RS09255 -1.2 -0.8 phosphoribosylamine--glycine ligase compare
A4249_RS12970 -1.2 -3.8 glycosyltransferase family 61 protein compare
A4249_RS01355 -1.2 -1.7 hypothetical protein compare
A4249_RS08220 -1.1 -1.5 phosphoribosylglycinamide formyltransferase compare
A4249_RS01120 -1.1 -1.9 uracil-DNA glycosylase compare
A4249_RS10245 -1.1 -3.2 MucR family transcriptional regulator compare
A4249_RS06985 -1.1 -0.9 hypothetical protein compare
A4249_RS00720 -1.1 -1.6 DUF1294 domain-containing protein compare
A4249_RS09405 -1.1 -1.4 beta-N-acetylhexosaminidase compare
A4249_RS09605 -1.1 -1.4 DUF6468 domain-containing protein compare
A4249_RS14205 -1.1 -1.1 response regulator compare
A4249_RS14875 -1.1 -1.8 benzoate/H(+) symporter BenE family transporter compare
A4249_RS07920 -1.0 -3.6 metalloregulator ArsR/SmtB family transcription factor compare
A4249_RS13180 -1.0 -1.4 SDR family oxidoreductase compare
A4249_RS06165 -1.0 -3.2 aminodeoxychorismate/anthranilate synthase component II compare
A4249_RS10965 -1.0 -0.9 response regulator compare
A4249_RS04125 -1.0 -1.7 mechanosensitive ion channel family protein compare
A4249_RS13615 -1.0 -2.2 Rrf2 family transcriptional regulator compare
A4249_RS13590 -1.0 -3.5 [protein-PII] uridylyltransferase compare
A4249_RS16425 -1.0 -1.1 hypothetical protein compare
A4249_RS14445 -1.0 -1.5 hypothetical protein compare
A4249_RS14835 -1.0 -3.4 S41 family peptidase compare
A4249_RS14025 -1.0 -1.4 CHAP domain-containing protein compare
A4249_RS13760 -0.9 -1.5 YggS family pyridoxal phosphate-dependent enzyme compare
A4249_RS01325 -0.9 -1.1 hypothetical protein compare
A4249_RS13190 -0.9 -2.1 2-oxo acid dehydrogenase subunit E2 compare
A4249_RS07470 -0.9 -0.9 hypothetical protein compare
A4249_RS02645 -0.9 -1.1 cobalamin biosynthesis protein CbiG compare
A4249_RS00060 -0.9 -1.7 fatty acid desaturase compare
A4249_RS11125 -0.9 -6.5 glycosyltransferase family 9 protein compare
A4249_RS14905 -0.9 -1.5 phosphonate ABC transporter ATP-binding protein compare
A4249_RS10835 -0.9 -2.4 c-type cytochrome biogenesis protein CcmI compare
A4249_RS14550 -0.9 -3.2 AMP nucleosidase compare
A4249_RS10500 -0.9 -2.1 PspA/IM30 family protein compare
A4249_RS01275 -0.9 -1.9 hypothetical protein compare
A4249_RS11285 -0.9 -1.8 double-strand break repair protein AddB compare
A4249_RS09830 -0.9 -3.2 ATP-binding protein compare
A4249_RS08375 -0.9 -1.5 hypothetical protein compare
A4249_RS14900 -0.9 -3.5 phosphate/phosphite/phosphonate ABC transporter substrate-binding protein compare
A4249_RS12635 -0.9 -2.5 phosphatase PAP2 family protein compare
A4249_RS00100 -0.9 -1.5 PadR family transcriptional regulator compare
A4249_RS14360 -0.8 -1.4 pilus assembly protein compare
A4249_RS12455 -0.8 -1.2 hypothetical protein compare
A4249_RS17065 -0.8 -2.2 methyltransferase domain-containing protein compare
A4249_RS13705 -0.8 -3.8 tRNA uridine-5-carboxymethylaminomethyl(34) synthesis enzyme MnmG compare
A4249_RS17040 -0.8 -1.9 hypothetical protein compare
A4249_RS13570 -0.8 -2.3 DUF1178 family protein compare
A4249_RS00895 -0.8 -1.1 DUF1476 domain-containing protein compare
A4249_RS10060 -0.8 -3.2 RluA family pseudouridine synthase compare
A4249_RS01715 -0.8 -2.7 GNAT family N-acetyltransferase compare
A4249_RS06560 -0.8 -3.5 amino acid permease compare
A4249_RS14510 -0.8 -0.9 hypothetical protein compare
A4249_RS01010 -0.8 -3.7 capsular polysaccharide biosynthesis protein compare
A4249_RS10295 -0.8 -0.7 hypothetical protein compare
A4249_RS13450 -0.8 -1.4 PilZ domain-containing protein compare
A4249_RS15275 -0.8 -2.2 peptide chain release factor 3 compare
A4249_RS16135 -0.8 -1.9 glycoside hydrolase family 3 N-terminal domain-containing protein compare
A4249_RS13400 -0.8 -1.4 DUF2939 domain-containing protein compare
A4249_RS09840 -0.7 -2.5 pyrroline-5-carboxylate reductase dimerization domain-containing protein compare
A4249_RS13535 -0.7 -3.0 bifunctional glutamate N-acetyltransferase/amino-acid acetyltransferase ArgJ compare
A4249_RS14975 -0.7 -1.8 creatininase family protein compare
A4249_RS11400 -0.7 -1.4 GNAT family N-acetyltransferase compare
A4249_RS11225 -0.7 -1.2 fumarylacetoacetate hydrolase family protein compare
A4249_RS03645 -0.7 -2.6 TonB-dependent receptor compare
A4249_RS08595 -0.7 -1.9 ABC transporter ATP-binding protein compare
A4249_RS00545 -0.7 -2.5 hypothetical protein compare
A4249_RS15820 -0.7 -2.6 arsenate reductase (glutaredoxin) compare
A4249_RS05465 -0.7 -1.8 ABC transporter ATP-binding protein compare
A4249_RS02600 -0.7 -2.6 hypothetical protein compare
A4249_RS15645 -0.7 -2.1 potassium-transporting ATPase subunit KdpB compare
A4249_RS15980 -0.7 -1.8 multidrug efflux SMR transporter compare
A4249_RS13560 -0.7 -1.4 glutaredoxin 3 compare
A4249_RS10360 -0.7 -1.0 HAMP domain-containing sensor histidine kinase compare
A4249_RS02765 -0.7 -1.1 hypothetical protein compare
A4249_RS07405 -0.7 -1.6 hypothetical protein compare
A4249_RS14580 -0.6 -1.5 hypothetical protein compare
A4249_RS06550 -0.6 -1.6 chorismate mutase compare
A4249_RS10105 -0.6 -0.7 DUF2460 domain-containing protein compare
A4249_RS04350 -0.6 -1.5 lipopolysaccharide biosynthesis protein compare
A4249_RS07105 -0.6 -0.9 hypothetical protein compare
A4249_RS04190 -0.6 -1.4 MliC family protein compare
A4249_RS10365 -0.6 -1.4 hypothetical protein compare
A4249_RS16995 -0.6 -4.2 phosphoglycerate dehydrogenase compare
A4249_RS13060 -0.6 -4.3 AGE family epimerase/isomerase compare
A4249_RS13805 -0.6 -0.5 HAD family hydrolase compare
A4249_RS01765 -0.6 -1.2 DUF3489 domain-containing protein compare
A4249_RS15195 -0.6 -1.8 DcaP family trimeric outer membrane transporter compare
A4249_RS01635 -0.6 -1.0 ABC transporter ATP-binding protein compare
A4249_RS01235 -0.6 -0.9 hypothetical protein compare
A4249_RS04210 -0.6 -2.0 TMEM175 family protein compare
A4249_RS16355 -0.6 -2.0 cation transporter compare
A4249_RS10115 -0.6 -1.1 phage tail tape measure protein compare
A4249_RS08145 -0.6 -1.1 NAD(P)H-binding protein compare
A4249_RS01555 -0.6 -1.4 response regulator compare
A4249_RS00525 -0.6 -2.5 molybdopterin-binding protein compare
A4249_RS09340 -0.6 -3.9 aminomethyl-transferring glycine dehydrogenase subunit GcvPB compare
A4249_RS08380 -0.6 -1.4 RidA family protein compare
A4249_RS07090 -0.6 -1.1 hypothetical protein compare
A4249_RS11645 -0.6 -2.6 helix-turn-helix domain-containing protein compare
A4249_RS05625 -0.6 -4.5 ADP-glyceromanno-heptose 6-epimerase compare
A4249_RS05485 -0.6 -1.0 uracil-DNA glycosylase compare
A4249_RS16105 -0.6 -4.3 glutamate synthase large subunit compare
A4249_RS08530 -0.6 -1.7 RNA polymerase-binding protein DksA compare
A4249_RS15485 -0.6 -1.7 biliverdin-producing heme oxygenase compare
A4249_RS15325 -0.6 -3.7 long-chain-acyl-CoA synthetase compare
A4249_RS16085 -0.6 -0.8 PTS IIA-like nitrogen regulatory protein PtsN compare
A4249_RS07125 -0.6 -1.7 hypothetical protein compare
A4249_RS07195 -0.6 -1.0 hypothetical protein compare
A4249_RS12030 -0.6 -1.9 prepilin peptidase compare
A4249_RS01090 -0.6 -0.8 sigma-70 family RNA polymerase sigma factor compare
A4249_RS11150 -0.6 -2.4 capsular biosynthesis protein compare
A4249_RS08405 -0.5 -1.8 TIGR01841 family phasin compare
A4249_RS06665 -0.5 -0.7 endonuclease/exonuclease/phosphatase family protein compare
A4249_RS09480 -0.5 -1.6 hypothetical protein compare
A4249_RS10000 -0.5 -1.8 3-isopropylmalate dehydratase small subunit compare
A4249_RS10815 -0.5 -1.3 Do family serine endopeptidase compare
A4249_RS02675 -0.5 -2.1 N-acetyltransferase compare
A4249_RS10025 -0.5 -2.9 ketol-acid reductoisomerase compare
A4249_RS08865 -0.5 -0.9 DUF1192 domain-containing protein compare
A4249_RS04200 -0.5 -1.4 pseudouridine synthase compare
A4249_RS05400 -0.5 -2.0 hypothetical protein compare
A4249_RS07930 -0.5 -2.9 homocysteine S-methyltransferase family protein compare
A4249_RS11520 -0.5 -1.9 class I SAM-dependent methyltransferase compare
A4249_RS00115 -0.5 -1.6 heme o synthase compare
A4249_RS10820 -0.5 -0.7 cytochrome c-type biogenesis protein CcmH compare
A4249_RS10840 -0.5 -1.8 hypothetical protein compare
A4249_RS08570 -0.5 -2.2 group III truncated hemoglobin compare
A4249_RS15690 -0.5 -1.7 DsbA family oxidoreductase compare
A4249_RS07075 -0.5 -2.3 helix-turn-helix domain-containing protein compare
A4249_RS01400 -0.5 -1.3 ParB N-terminal domain-containing protein compare
A4249_RS08590 -0.5 -2.4 MlaD family protein compare
A4249_RS02565 -0.5 -3.4 cytochrome b N-terminal domain-containing protein compare
A4249_RS14060 -0.5 -0.9 YidB family protein compare
A4249_RS07560 -0.5 -1.1 hypothetical protein compare
A4249_RS05375 -0.5 -2.2 damage-inducible protein compare
A4249_RS10005 -0.5 -3.6 3-isopropylmalate dehydratase large subunit compare
A4249_RS11450 -0.5 -2.0 histidinol-phosphate transaminase compare
A4249_RS02865 -0.5 -0.7 arsenate reductase family protein compare
A4249_RS16165 -0.5 -1.2 homoserine O-succinyltransferase compare
A4249_RS16585 -0.5 -1.5 hypothetical protein compare
A4249_RS08265 -0.5 -1.4 nitroreductase compare
A4249_RS08915 -0.5 -2.8 ATP-binding cassette domain-containing protein compare
A4249_RS06835 -0.5 -1.4 prephenate dehydratase domain-containing protein compare
A4249_RS05155 -0.5 -1.5 CHASE3 domain-containing protein compare
A4249_RS15530 -0.5 -2.4 helicase-related protein compare
A4249_RS15790 -0.5 -1.9 hypothetical protein compare
A4249_RS15320 -0.5 -0.9 hypothetical protein compare
A4249_RS08725 -0.5 -1.2 hypothetical protein compare
A4249_RS00105 -0.5 -2.6 cytochrome c oxidase subunit II compare
A4249_RS13010 -0.5 -1.8 FkbM family methyltransferase compare
A4249_RS05730 -0.5 -1.3 uracil-DNA glycosylase compare
A4249_RS16710 -0.5 -0.9 hypothetical protein compare
A4249_RS12070 -0.4 -1.5 hypothetical protein compare
A4249_RS11770 -0.4 -0.8 cation transporter compare
A4249_RS07380 -0.4 -1.3 exopolysaccharide biosynthesis protein compare
A4249_RS06155 -0.4 -1.5 anthranilate synthase component I compare
A4249_RS03115 -0.4 -0.5 signal peptidase II compare
A4249_RS08760 -0.4 -1.6 hypothetical protein compare
A4249_RS01460 -0.4 -0.8 signal peptide peptidase SppA compare
A4249_RS01650 -0.4 -0.6 DUF1289 domain-containing protein compare
A4249_RS13745 -0.4 -2.1 DUF3576 domain-containing protein compare
A4249_RS14625 -0.4 -1.1 hypothetical protein compare
A4249_RS14715 -0.4 -2.0 PhoH family protein compare
A4249_RS11395 -0.4 -1.8 hypothetical protein compare
A4249_RS11425 -0.4 -0.8 ATP-binding cassette domain-containing protein compare
A4249_RS04765 -0.4 -1.5 ATP-dependent DNA helicase RecG compare
A4249_RS07215 -0.4 -2.8 dicarboxylate/amino acid:cation symporter compare
A4249_RS09090 -0.4 -0.5 hypothetical protein compare
A4249_RS03225 -0.4 -1.2 hypothetical protein compare
A4249_RS08585 -0.4 -1.2 ABC-type transport auxiliary lipoprotein family protein compare
A4249_RS00170 -0.4 -0.6 TetR/AcrR family transcriptional regulator compare
A4249_RS05920 -0.4 -3.5 N-acetyl-gamma-glutamyl-phosphate reductase compare
A4249_RS04755 -0.4 -1.8 TatD family hydrolase compare
A4249_RS05900 -0.4 -0.8 hypothetical protein compare
A4249_RS12660 -0.4 -2.3 aldo/keto reductase compare
A4249_RS12260 -0.4 -0.8 3-hydroxybutyryl-CoA dehydrogenase compare
A4249_RS12450 -0.4 -2.2 GNAT family N-acetyltransferase compare


Specific Phenotypes

None in this experiment

For Brevundimonas sp. GW460-12-10-14-LB2 in carbon source experiments

For carbon source Cytidine across organisms