Experiment set2S754 for Escherichia coli ECRC100

Compare to:

Casamino-acids

200 most detrimental genes:

  gene name fitness t score description  
OKFHMN_01015 ydfG +1.5 2.4 bifunctional NADP-dependent 3-hydroxy acid dehydrogenase/3-hydroxypropionate dehydrogenase YdfG compare
OKFHMN_24610 +1.3 1.9 conjugal transfer protein TraR compare
OKFHMN_26970 chbA +1.2 1.9 PTS N,N'-diacetylchitobiose transporter subunit IIA compare
OKFHMN_01730 hrpA +1.2 3.0 ATP-dependent RNA helicase HrpA compare
OKFHMN_24220 +1.2 1.6 Type I toxin-antitoxin system Ibs family toxin compare
OKFHMN_01490 rhsA +1.2 3.0 RHS element protein compare
OKFHMN_08460 nrdR +1.2 1.4 transcriptional regulator NrdR compare
OKFHMN_07045 +1.2 1.5 Uncharacterized protein YbfC compare
OKFHMN_28610 ychT +1.1 2.3 Protein YchT compare
OKFHMN_09820 +1.1 2.0 Sel1 domain protein repeat-containing protein compare
OKFHMN_04430 +1.1 1.8 ATP-binding protein compare
OKFHMN_03055 +1.1 1.5 hypothetical protein compare
OKFHMN_22565 sixA +1.1 1.4 phosphohistidine phosphatase SixA compare
OKFHMN_06265 ybiE +1.0 1.7 Protein YbiE compare
OKFHMN_21650 iscX +1.0 1.0 Fe-S cluster assembly protein IscX compare
OKFHMN_05690 +1.0 2.5 Ybl103 compare
OKFHMN_06065 +1.0 2.0 addiction module toxin RelE compare
OKFHMN_01260 ydeN +1.0 1.1 Uncharacterized sulfatase YdeN compare
OKFHMN_27410 mepH +1.0 1.6 peptidoglycan DD-endopeptidase MepH compare
OKFHMN_03120 +0.9 1.2 T3SS effector NleG compare
OKFHMN_14265 rfaH +0.9 1.5 transcription/translation regulatory transformer protein RfaH compare
OKFHMN_14650 +0.9 3.2 Acetolactate synthase isozyme 2 small subunit compare
OKFHMN_04220 +0.9 2.0 IS66 family transposase compare
OKFHMN_05515 pflA +0.9 3.0 pyruvate formate lyase 1-activating protein compare
OKFHMN_23700 +0.9 2.0 Bacteriophage protein compare
OKFHMN_10690 fruL +0.9 1.3 Putative fruR/shl operon leader peptide compare
OKFHMN_06555 +0.9 1.4 lysis protein compare
OKFHMN_16360 dctR +0.9 2.3 HTH-type transcriptional regulator DctR compare
OKFHMN_01630 ydcK +0.9 2.6 YdcK family protein compare
OKFHMN_26890 ydjY +0.8 1.8 Uncharacterized protein YdjY compare
OKFHMN_19845 ygeN +0.8 1.1 Putative uncharacterized protein YgeN compare
OKFHMN_04055 +0.8 1.4 hypothetical protein compare
OKFHMN_07410 tatE +0.8 4.3 deaminated glutathione amidase compare
OKFHMN_24155 +0.8 1.1 Uncharacterized protein YegR compare
OKFHMN_28790 +0.8 0.8 Hypothetical rem protein compare
OKFHMN_24465 perB +0.8 3.7 GDP-perosamine N-acetyltransferase compare
OKFHMN_01530 curA +0.8 1.6 NADPH-dependent curcumin/dihydrocurcumin reductase compare
OKFHMN_08030 +0.8 2.3 hypothetical protein compare
OKFHMN_22540 +0.8 1.8 Uncharacterized protein YfdF compare
OKFHMN_09205 ykgK,ecpR +0.8 2.8 regulator protein EcpR compare
OKFHMN_08510 queA +0.8 2.4 tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA compare
OKFHMN_01025 ydeJ +0.8 1.9 2-oxo-tetronate isomerase compare
OKFHMN_27265 sufD +0.8 1.0 Fe-S cluster assembly protein SufD compare
OKFHMN_26100 flhD +0.8 1.0 flagellar transcriptional regulator FlhD compare
OKFHMN_22945 menB +0.8 1.2 1,4-dihydroxy-2-naphthoyl-CoA synthase compare
OKFHMN_20575 hycB +0.8 1.9 formate hydrogenlyase subunit HycB compare
OKFHMN_27650 fumC +0.8 1.4 class II fumarate hydratase compare
OKFHMN_07780 sfmF +0.8 2.1 fimbria assembly protein compare
OKFHMN_22170 cysM +0.8 1.9 cysteine synthase B compare
OKFHMN_22040 eutN +0.8 1.7 ethanolamine utilization microcompartment protein EutN compare
OKFHMN_00835 +0.8 1.4 lysozyme compare
OKFHMN_14115 +0.8 1.2 Uncharacterized protein YshB compare
OKFHMN_28420 ychH +0.8 1.4 stress-induced protein YchH compare
OKFHMN_15495 tnp-IS3 +0.8 1.3 IS3 family transposase compare
OKFHMN_28175 menH +0.7 1.4 alpha/beta hydrolase compare
OKFHMN_03650 flgG +0.7 1.3 flagellar basal-body rod protein FlgG compare
OKFHMN_25365 +0.7 1.7 9-O-acetyl-N-acetylneuraminic acid deacetylase compare
OKFHMN_07290 djlC +0.7 1.4 Uncharacterized J domain-containing protein DjlC compare
OKFHMN_20850 yciW +0.7 1.1 alkylhydroperoxidase compare
OKFHMN_04575 efeO +0.7 1.7 iron uptake system protein EfeO compare
OKFHMN_23675 yehW +0.7 1.0 glycine betaine ABC transporter permease YehW compare
OKFHMN_04535 dgcT +0.7 2.2 putative diguanylate cyclase DgcT compare
OKFHMN_27155 ydiT +0.7 1.7 Ferredoxin-like protein YdiT compare
OKFHMN_17245 yhfA +0.7 1.5 OsmC family protein compare
OKFHMN_00715 +0.7 1.2 terminase compare
OKFHMN_06085 gsiD +0.7 1.3 glutathione ABC transporter permease GsiD compare
OKFHMN_01625 tehA +0.7 0.8 dicarboxylate transporter/tellurite-resistance protein TehA compare
OKFHMN_00750 nudJ +0.7 1.1 phosphatase NudJ compare
OKFHMN_25540 yodB +0.7 1.4 Cytochrome b561-like protein compare
OKFHMN_27405 sodB +0.7 1.2 superoxide dismutase [Fe] compare
OKFHMN_05530 ycaC +0.7 1.6 putative hydrolase YcaC compare
OKFHMN_24955 +0.7 2.2 toxin-antitoxin system HicB family antitoxin compare
OKFHMN_21060 rrrD +0.7 2.1 lysozyme compare
OKFHMN_13070 dgkA +0.7 2.0 diacylglycerol kinase compare
OKFHMN_28465 sirB1 +0.7 1.9 invasion regulator SirB1 compare
OKFHMN_00560 +0.7 1.2 phage repressor protein/antirepressor Ant compare
OKFHMN_25605 vsr +0.7 2.1 VSPR family DNA mismatch endonuclease compare
OKFHMN_26195 cutC +0.7 0.7 copper homeostasis protein CutC compare
OKFHMN_16160 bcsQ +0.7 2.0 cellulose biosynthesis protein BcsQ compare
OKFHMN_27205 uhpC +0.7 2.3 MFS transporter compare
OKFHMN_26345 kdgA +0.6 1.2 bifunctional 4-hydroxy-2-oxoglutarate aldolase/2-dehydro-3-deoxy-phosphogluconate aldolase compare
OKFHMN_24235 terY +0.6 2.3 Uncharacterized protein YegL compare
OKFHMN_00640 +0.6 1.6 integrase compare
OKFHMN_01445 +0.6 1.0 N-hydroxyarylamine O-acetyltransferase compare
OKFHMN_12025 ytfJ +0.6 1.9 Uncharacterized protein YtfJ compare
OKFHMN_05330 elfD +0.6 1.0 putative fimbrial chaperone protein ElfD compare
OKFHMN_16000 hokA +0.6 1.0 type I toxin-antitoxin system toxin HokA compare
OKFHMN_06560 rrrD +0.6 0.8 lysozyme RrrD compare
OKFHMN_00855 ybcW +0.6 2.3 Uncharacterized protein YbcW compare
OKFHMN_11000 fimA +0.6 1.4 fimbrial protein compare
OKFHMN_25305 +0.6 0.6 hypothetical protein compare
OKFHMN_20210 truC +0.6 0.9 tRNA pseudouridine(65) synthase TruC compare
OKFHMN_09295 +0.6 1.4 hypothetical protein compare
OKFHMN_22910 elaD +0.6 0.8 ElaD/SseL family deubiquitinase compare
OKFHMN_19765 +0.6 0.7 type III secretion protein compare
OKFHMN_05865 amiD +0.6 1.6 N-acetylmuramoyl-L-alanine amidase AmiD compare
OKFHMN_00675 +0.6 0.8 hypothetical protein compare
OKFHMN_25870 +0.6 1.3 phage tail protein compare
OKFHMN_12140 ulaC +0.6 2.0 PTS ascorbate transporter subunit IIA compare
OKFHMN_20930 ygaQ +0.6 2.1 Putative uncharacterized protein YgaQ compare
OKFHMN_22315 ypeC +0.6 0.7 Uncharacterized protein YpeC compare
OKFHMN_26075 araG +0.6 3.0 arabinose ABC transporter ATP-binding protein AraG compare
OKFHMN_11875 ridA +0.6 1.3 2-iminobutanoate/2-iminopropanoate deaminase compare
OKFHMN_24165 yegQ +0.6 1.5 tRNA 5-hydroxyuridine modification protein YegQ compare
OKFHMN_22395 yfdX +0.6 1.0 Protein YfdX compare
OKFHMN_24170 yegP +0.6 1.8 UPF0339 protein YegP compare
OKFHMN_14125 yihI +0.6 1.3 Der GTPase-activating protein YihI compare
OKFHMN_26470 htpX +0.6 1.1 protease HtpX compare
OKFHMN_27560 ydgK +0.6 1.1 Inner membrane protein YdgK compare
OKFHMN_11140 creB +0.6 2.6 two-component system response regulator CreB compare
OKFHMN_19025 hybD +0.6 1.7 HyaD/HybD family hydrogenase maturation endopeptidase compare
OKFHMN_09080 +0.6 1.3 Adhesin compare
OKFHMN_25550 msrQ +0.6 0.8 protein-methionine-sulfoxide reductase heme-binding subunit MsrQ compare
OKFHMN_26605 rnd +0.6 1.0 ribonuclease D compare
OKFHMN_27895 +0.6 1.6 DUF977 domain-containing protein compare
OKFHMN_15790 +0.6 1.2 DUF3251 domain-containing protein compare
OKFHMN_11245 yjjW +0.6 3.4 Putative glycyl-radical enzyme activating enzyme YjjW compare
OKFHMN_06045 gstB +0.6 2.3 glutathione S-transferase GstB compare
OKFHMN_02335 pgmB +0.6 0.9 beta-phosphoglucomutase compare
OKFHMN_15450 espF +0.6 0.7 type III secretion system LEE effector EspF compare
OKFHMN_03435 potD +0.6 1.2 spermidine/putrescine ABC transporter substrate-binding protein PotD compare
OKFHMN_13795 yfcZ +0.6 1.8 DUF406 domain-containing protein compare
OKFHMN_02625 cobO +0.6 1.9 cob(I)yrinic acid a,c-diamide adenosyltransferase compare
OKFHMN_28765 +0.6 1.0 DNA-binding protein compare
OKFHMN_05215 yccF +0.6 1.4 YccF domain-containing protein compare
OKFHMN_12825 ytcB +0.6 0.7 Protein YtcB compare
OKFHMN_12900 yjbR +0.6 2.3 Uncharacterized protein YjbR compare
OKFHMN_03495 ndh +0.6 2.3 NADH-quinone dehydrogenase compare
OKFHMN_09795 +0.6 1.3 ISAs1-like element ISEc26 family transposase compare
OKFHMN_09000 yahE +0.6 0.8 Uncharacterized protein YahE compare
OKFHMN_27870 ydaS +0.6 1.6 Putative antitoxin of bacterial toxin-antitoxin system, YdaS/YdaT compare
OKFHMN_20815 proW +0.6 2.2 glycine betaine/L-proline ABC transporter permease ProW compare
OKFHMN_11480 yjiL +0.6 2.6 Uncharacterized protein YjiL compare
OKFHMN_26840 gdhA +0.6 1.8 NADP-specific glutamate dehydrogenase compare
OKFHMN_24400 +0.6 3.7 N-acetyl-alpha-D-glucosaminyl-diphospho-ditrans,o ctacis-undecaprenol 4-epimerase compare
OKFHMN_28325 emtA +0.6 1.5 membrane-bound lytic murein transglycosylase EmtA compare
OKFHMN_28510 ychN +0.6 0.7 DsrE/F sulfur relay family protein YchN compare
OKFHMN_26855 ynjF +0.6 0.8 Inner membrane protein YnjF compare
OKFHMN_16645 +0.6 1.7 hypothetical protein compare
OKFHMN_01765 pdxI +0.6 1.1 pyridoxine 4-dehydrogenase compare
OKFHMN_15680 rfaB +0.6 1.9 UDP-glucose--(glucosyl)LPS alpha-1,2-glucosyltransferase compare
OKFHMN_03465 ycfT +0.6 1.2 Inner membrane protein YcfT compare
OKFHMN_24430 rfbE +0.6 2.4 GDP-perosamine synthase RfbE/PerA compare
OKFHMN_00445 traX +0.6 2.8 conjugal transfer pilus acetylase TraX compare
OKFHMN_08015 +0.6 1.5 hypothetical protein compare
OKFHMN_02010 +0.6 1.0 antiterminator compare
OKFHMN_24970 +0.6 0.9 tail assembly protein compare
OKFHMN_18745 ibsE +0.6 1.1 Small toxic protein IbsE compare
OKFHMN_22525 Arg_trna +0.6 2.0 tRNA-Arg(cct) compare
OKFHMN_21005 +0.6 1.4 endonuclease compare
OKFHMN_19835 +0.6 0.7 type III secretion apparatus protein OrgA/MxiK compare
OKFHMN_08425 yajO +0.6 1.4 1-deoxyxylulose-5-phosphate synthase YajO compare
OKFHMN_27170 ydiQ +0.6 1.2 electron transfer flavoprotein compare
OKFHMN_18455 yhaI +0.5 1.2 Inner membrane protein YhaI compare
OKFHMN_18885 ygiW +0.5 2.3 OB fold stress tolerance protein YgiW compare
OKFHMN_27335 ydhR +0.5 1.2 monooxygenase compare
OKFHMN_28375 fepB +0.5 1.6 ABC transporter ATP-binding protein compare
OKFHMN_26900 xthA +0.5 0.9 exodeoxyribonuclease III compare
OKFHMN_03035 +0.5 0.9 Antirepressor protein compare
OKFHMN_10680 mraZ +0.5 2.7 division/cell wall cluster transcriptional repressor MraZ compare
OKFHMN_24900 +0.5 0.8 head-tail connector protein compare
OKFHMN_15180 uhpA_G97D +0.5 3.6 DNA-binding response regulator UhpA compare
OKFHMN_22270 insQ +0.5 1.9 Putative RNA-guided DNA endonuclease InsQ compare
OKFHMN_02090 +0.5 0.9 DUF1391 domain-containing protein compare
OKFHMN_10710 leuL +0.5 1.6 leu operon leader peptide compare
OKFHMN_01800 hslJ +0.5 1.3 heat shock protein HslJ compare
OKFHMN_23920 yehS +0.5 1.3 Uncharacterized protein YehS compare
OKFHMN_02450 puuP +0.5 0.8 putrescine/proton symporter PuuP compare
OKFHMN_25665 fliP +0.5 0.7 flagellar type III secretion system pore protein FliP compare
OKFHMN_04405 +0.5 1.5 hypothetical protein compare
OKFHMN_05285 ycbX +0.5 1.3 6-N-hydroxylaminopurine resistance protein YcbX compare
OKFHMN_08660 +0.5 0.9 hypothetical protein compare
OKFHMN_28200 +0.5 1.5 autotransporter outer membrane beta-barrel domain-containing protein compare
OKFHMN_23400 mepS +0.5 2.0 bifunctional murein DD-endopeptidase/murein LD-carboxypeptidase compare
OKFHMN_05685 +0.5 1.1 hypothetical protein compare
OKFHMN_23360 rsuA +0.5 2.1 16S rRNA pseudouridine(516) synthase RsuA compare
OKFHMN_01415 narU +0.5 1.8 nitrate/nitrite transporter NarU compare
OKFHMN_14395 corA +0.5 0.8 magnesium/cobalt transporter CorA compare
OKFHMN_06565 +0.5 0.7 holin compare
OKFHMN_02300 tpx +0.5 0.6 thiol peroxidase compare
OKFHMN_00725 phoQ +0.5 3.0 two-component system sensor histidine kinase PhoQ compare
OKFHMN_08025 +0.5 2.2 IHP2 compare
OKFHMN_02635 yciQ +0.5 1.6 Uncharacterized protein YciQ compare
OKFHMN_22635 yfcL +0.5 1.4 Uncharacterized protein YfcL compare
OKFHMN_24045 rcnA +0.5 2.1 nickel/cobalt efflux protein RcnA compare
OKFHMN_15130 +0.5 2.4 Anaerobic sulfatase-maturating enzyme compare
OKFHMN_27430 +0.5 1.0 Lactoylglutathione lyase compare
OKFHMN_23475 nupX +0.5 2.2 Putative nucleoside permease NupX compare
OKFHMN_07970 ybbA +0.5 2.0 ABC transporter ATP-binding protein compare
OKFHMN_01635 rimL +0.5 0.6 50S ribosomal protein L7/L12-serine acetyltransferase compare
OKFHMN_28570 purU +0.5 1.0 formyltetrahydrofolate deformylase compare
OKFHMN_06550 +0.5 1.0 Putative bacteriophage protein (Gene 65) compare
OKFHMN_01130 uxaB +0.5 0.9 tagaturonate reductase compare
OKFHMN_18460 yhaH +0.5 1.1 Inner membrane protein YhaH compare
OKFHMN_02495 adeB +0.5 1.5 hydrophobe/amphiphile efflux-1 family RND transporter compare
OKFHMN_24435 rfaB +0.5 0.8 glycosyl transferase compare
OKFHMN_28645 oppD +0.5 1.2 murein tripeptide/oligopeptide ABC transporter ATP-binding protein OppD compare
OKFHMN_27815 +0.5 1.0 DNA-binding protein compare
OKFHMN_21345 grcA +0.5 1.5 autonomous glycyl radical cofactor GrcA compare
OKFHMN_04205 +0.5 0.7 IS66-like element IS682 family transposase compare


Specific Phenotypes

None in this experiment

For Escherichia coli ECRC100 in carbon source experiments

For carbon source Casamino-acids across organisms