Experiment set2S745 for Escherichia coli ECOR27

Compare to:

L-Rhamnose

200 most important genes:

  gene name fitness t score description  
NOLOHH_03075 leuD -9.3 -3.7 3-isopropylmalate dehydratase small subunit compare
NOLOHH_14160 Arg_trna -7.5 -3.4 tRNA-Arg(cct) compare
NOLOHH_15815 hisH -6.9 -4.0 imidazole glycerol phosphate synthase subunit HisH compare
NOLOHH_02690 dksA -6.8 -4.7 RNA polymerase-binding protein DksA compare
NOLOHH_00825 purE -6.7 -4.9 N5-carboxyaminoimidazole ribonucleotide mutase compare
NOLOHH_18610 pinR -6.6 -1.5 Serine recombinase PinR compare
NOLOHH_20455 hns -6.5 -3.9 DNA-binding transcriptional regulator H-NS compare
NOLOHH_15830 hisD -6.3 -7.5 Histidinol dehydrogenase compare
NOLOHH_11370 serA -6.1 -12.4 phosphoglycerate dehydrogenase compare
NOLOHH_20315 trpE -6.0 -9.1 anthranilate synthase component I compare
NOLOHH_13590 purC -5.9 -4.2 phosphoribosylaminoimidazolesuccinocarboxamide synthase compare
NOLOHH_15805 hisF -5.9 -6.0 Imidazole glycerol phosphate synthase subunit HisF compare
NOLOHH_05810 metF -5.9 -11.8 methylenetetrahydrofolate reductase compare
NOLOHH_13865 crr -5.7 -1.3 PTS glucose transporter subunit IIA compare
NOLOHH_09730 ptsN -5.7 -3.1 PTS IIA-like nitrogen regulatory protein PtsN compare
NOLOHH_15820 hisB -5.7 -5.5 bifunctional histidinol-phosphatase/imidazoleglycerol-phosphate dehydratase HisB compare
NOLOHH_20330 trpB -5.7 -3.9 tryptophan synthase subunit beta compare
NOLOHH_03070 leuC1 -5.5 -10.8 3-isopropylmalate dehydratase large subunit 1 compare
NOLOHH_19570 sitB -5.5 -2.8 iron/manganese ABC transporter ATP-binding protein SitB compare
NOLOHH_05740 ppc -5.4 -15.8 phosphoenolpyruvate carboxylase compare
NOLOHH_03275 carA -5.4 -11.2 carbamoyl phosphate synthase small subunit compare
NOLOHH_22045 aroA -5.3 -6.0 3-phosphoshikimate 1-carboxyvinyltransferase compare
NOLOHH_13990 ypeD -5.3 -1.7 Protein YpeD compare
NOLOHH_14295 pdxB -5.2 -8.1 4-phosphoerythronate dehydrogenase PdxB compare
NOLOHH_01535 proC -5.2 -9.4 pyrroline-5-carboxylate reductase compare
NOLOHH_05460 purD -5.2 -10.9 Phosphoribosylamine--glycine ligase compare
NOLOHH_03270 carB -5.2 -13.9 carbamoyl-phosphate synthase large subunit compare
NOLOHH_04295 cysQ -5.2 -9.6 3'(2'),5'-bisphosphate nucleotidase CysQ compare
NOLOHH_23345 gltA -5.2 -7.1 citrate synthase compare
NOLOHH_16620 yecT -5.1 -2.0 Uncharacterized protein YecT compare
NOLOHH_09890 argG -5.1 -11.5 argininosuccinate synthase compare
NOLOHH_03065 leuA -5.1 -12.7 2-isopropylmalate synthase compare
NOLOHH_06770 ilvA -5.1 -11.1 threonine ammonia-lyase, biosynthetic compare
NOLOHH_20320 trpD -5.0 -8.4 bifunctional anthranilate synthase glutamate amidotransferase component TrpG/anthranilate phosphoribosyltransferase TrpD compare
NOLOHH_22050 serC -5.0 -7.2 3-phosphoserine/phosphohydroxythreonine transaminase compare
NOLOHH_15810 hisA -5.0 -4.7 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)me thylideneamino]imidazole-4-carboxamide isomerase compare
NOLOHH_23310 odhB -5.0 -2.3 2-oxoglutarate dehydrogenase complex dihydrolipoyllysine-residue succinyltransferase compare
NOLOHH_03430 thrC -5.0 -8.4 threonine synthase compare
NOLOHH_05725 -5.0 -9.5 acetylglutamate kinase compare
NOLOHH_18855 fimA -5.0 -1.1 type 1 fimbrial major subunit FimA compare
NOLOHH_01255 lon_P403L -4.9 -10.7 Lon protease compare
NOLOHH_14250 aroC -4.9 -4.1 chorismate synthase compare
NOLOHH_03440 thrA -4.9 -16.6 bifunctional aspartate kinase/homoserine dehydrogenase I compare
NOLOHH_06035 rhaD -4.9 -13.8 rhamnulose-1-phosphate aldolase conserved
NOLOHH_21735 yccX -4.9 -2.5 acylphosphatase compare
NOLOHH_06760 ilvC -4.9 -9.5 ketol-acid reductoisomerase compare
NOLOHH_02045 proA -4.9 -12.7 glutamate-5-semialdehyde dehydrogenase compare
NOLOHH_05735 argE -4.8 -14.2 acetylornithine deacetylase compare
NOLOHH_04205 fbp -4.8 -11.1 class 1 fructose-bisphosphatase compare
NOLOHH_20335 trpA -4.8 -3.3 tryptophan synthase subunit alpha compare
NOLOHH_03060 -4.7 -12.5 2-isopropylmalate synthase compare
NOLOHH_05455 purH -4.7 -12.6 bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase compare
NOLOHH_05720 argH -4.6 -9.8 argininosuccinate lyase compare
NOLOHH_22530 mntS -4.6 -4.2 manganase accumulation protein MntS compare
NOLOHH_06765 ilvY -4.5 -10.4 HTH-type transcriptional activator IlvY compare
NOLOHH_17630 btuD -4.5 -2.1 vitamin B12 ABC transporter ATP-binding protein BtuD compare
NOLOHH_18640 ydfG -4.5 -2.0 bifunctional NADP-dependent 3-hydroxy acid dehydrogenase/3-hydroxypropionate dehydrogenase YdfG compare
NOLOHH_22180 clpA -4.5 -7.1 ATP-dependent Clp protease ATP-binding subunit ClpA compare
NOLOHH_06775 ilvD -4.5 -14.0 dihydroxy-acid dehydratase compare
NOLOHH_00405 hipB -4.5 -1.0 XRE family transcriptional regulator compare
NOLOHH_21260 pyrC -4.4 -4.7 dihydroorotase compare
NOLOHH_05420 metA -4.4 -6.8 homoserine O-succinyltransferase compare
NOLOHH_04090 argF -4.3 -10.8 ornithine carbamoyltransferase compare
NOLOHH_13145 purL -4.3 -15.2 phosphoribosylformylglycinamidine synthase compare
NOLOHH_11830 lysA -4.3 -9.4 diaminopimelate decarboxylase compare
NOLOHH_13185 glyA -4.3 -5.4 serine hydroxymethyltransferase compare
NOLOHH_03525 serB -4.3 -7.8 phosphoserine phosphatase compare
NOLOHH_19585 gpA1 -4.2 -1.6 phage tail protein compare
NOLOHH_19580 sitD -4.2 -1.6 iron/manganese ABC transporter permease subunit SitD compare
NOLOHH_06030 rhaA -4.2 -12.0 L-rhamnose isomerase conserved
NOLOHH_06780 ilvE -4.2 -11.0 branched-chain-amino-acid transaminase compare
NOLOHH_13415 guaA -4.1 -2.1 glutamine-hydrolyzing GMP synthase compare
NOLOHH_03435 thrB -4.1 -6.4 homoserine kinase compare
NOLOHH_02050 proB -4.1 -7.6 Glutamate 5-kinase compare
NOLOHH_05730 argC -4.1 -7.9 N-acetyl-gamma-glutamyl-phosphate reductase compare
NOLOHH_06920 mnmG -4.0 -5.5 tRNA uridine-5-carboxymethylaminomethyl(34) synthesis enzyme MnmG compare
NOLOHH_11945 argA -4.0 -7.5 amino-acid N-acetyltransferase compare
NOLOHH_20325 trpD -4.0 -8.0 bifunctional anthranilate synthase glutamate amidotransferase component TrpG/anthranilate phosphoribosyltransferase TrpD compare
NOLOHH_13460 purM -4.0 -5.3 Phosphoribosylformylglycinamidine cyclo-ligase compare
NOLOHH_06550 xerC -4.0 -2.0 tyrosine recombinase XerC compare
NOLOHH_06025 rhaB -3.9 -10.4 rhamnulokinase conserved
NOLOHH_09355 aroE -3.9 -7.1 shikimate dehydrogenase compare
NOLOHH_15825 hisC -3.9 -5.3 histidinol-phosphate transaminase compare
NOLOHH_19575 sitC -3.9 -5.8 iron/manganese ABC transporter permease subunit SitC compare
NOLOHH_19565 sitA -3.8 -3.9 iron/manganese ABC transporter substrate-binding protein SitA compare
NOLOHH_03375 dnaJ -3.8 -1.5 molecular chaperone DnaJ compare
NOLOHH_20465 rssB -3.7 -3.1 two-component system response regulator RssB compare
NOLOHH_07480 pyrE -3.6 -8.8 Orotate phosphoribosyltransferase compare
NOLOHH_11365 rpiA -3.6 -2.4 ribose-5-phosphate isomerase RpiA compare
NOLOHH_08905 aroB -3.6 -7.8 3-dehydroquinate synthase compare
NOLOHH_15835 hisG -3.5 -3.7 ATP phosphoribosyltransferase compare
NOLOHH_11825 lysR -3.5 -6.5 DNA-binding transcriptional regulator LysR compare
NOLOHH_13995 mntH -3.5 -10.3 Mn(2+) uptake NRAMP transporter MntH conserved
NOLOHH_02580 glnD -3.5 -1.1 bifunctional uridylyltransferase/uridylyl-removing protein GlnD compare
NOLOHH_03030 cra -3.4 -7.9 catabolite repressor/activator compare
NOLOHH_06015 rhaR -3.4 -11.2 HTH-type transcriptional activator RhaR conserved
NOLOHH_20200 yciT -3.3 -2.2 DNA-binding transcriptional regulator YciT compare
NOLOHH_13410 guaB -3.3 -4.0 IMP dehydrogenase compare
NOLOHH_19710 -3.3 -2.3 transcriptional regulator compare
NOLOHH_02845 aceE -3.3 -3.9 pyruvate dehydrogenase (acetyl-transferring), homodimeric type compare
NOLOHH_12895 tyrA -3.2 -8.3 bifunctional chorismate mutase/prephenate dehydrogenase compare
NOLOHH_03175 pdxA -3.2 -4.7 4-hydroxythreonine-4-phosphate dehydrogenase PdxA compare
NOLOHH_00620 -3.2 -1.0 Orf33, orf151, orf56, orf96, rus, orf45, orf8, orf127, and nmpC genes compare
NOLOHH_04125 pyrB -3.1 -10.8 aspartate carbamoyltransferase compare
NOLOHH_05820 metB -3.1 -12.1 cystathionine gamma-synthase compare
NOLOHH_14335 purF -3.1 -5.3 amidophosphoribosyltransferase compare
NOLOHH_03190 apaH -3.1 -9.0 bis(5'-nucleosyl)-tetraphosphatase (symmetrical) ApaH compare
NOLOHH_15800 hisIE -3.0 -4.5 bifunctional phosphoribosyl-AMP cyclohydrolase/phosphoribosyl-ATP diphosphatase HisIE compare
NOLOHH_13585 -3.0 -1.9 hypothetical protein compare
NOLOHH_09530 rng -3.0 -5.0 ribonuclease G compare
NOLOHH_16030 -3.0 -1.7 cobalamin biosynthesis protein compare
NOLOHH_13430 yfgG -3.0 -1.4 Uncharacterized protein YfgG compare
NOLOHH_01270 clpP -3.0 -4.6 ATP-dependent Clp endopeptidase proteolytic subunit ClpP compare
NOLOHH_06020 rhaS -3.0 -6.9 HTH-type transcriptional activator RhaS conserved
NOLOHH_12900 pheA -3.0 -6.5 bifunctional chorismate mutase/prephenate dehydratase compare
NOLOHH_22585 mcbA -3.0 -1.5 DUF1471 domain-containing protein compare
NOLOHH_18730 marC -2.9 -2.5 NAAT family transporter MarC compare
NOLOHH_19260 hicB -2.9 -0.9 type II toxin-antitoxin system antitoxin HicB compare
NOLOHH_11425 ubiI -2.9 -2.9 FAD-dependent 2-octaprenylphenol hydroxylase compare
NOLOHH_04525 miaA -2.8 -1.6 tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA compare
NOLOHH_12195 cysH -2.8 -4.4 phosphoadenosine phosphosulfate reductase compare
NOLOHH_14340 ubiX -2.7 -3.7 flavin prenyltransferase UbiX compare
NOLOHH_19780 -2.7 -1.5 hypothetical protein compare
NOLOHH_20215 pyrF -2.7 -3.2 orotidine-5'-phosphate decarboxylase compare
NOLOHH_22145 lrp -2.7 -6.4 leucine-responsive transcriptional regulator Lrp compare
NOLOHH_20715 -2.7 -1.8 hypothetical protein compare
NOLOHH_00830 purK -2.6 -5.5 5-(carboxyamino)imidazole ribonucleotide synthase compare
NOLOHH_18935 digH -2.6 -2.1 Glycosyl hydrolase DigH compare
NOLOHH_06040 rhaM -2.6 -6.0 L-rhamnose mutarotase conserved
NOLOHH_06790 ilvG -2.6 -9.5 acetolactate synthase 2 catalytic subunit compare
NOLOHH_12265 cysC -2.4 -7.0 Adenylyl-sulfate kinase compare
NOLOHH_06805 maoP -2.4 -9.8 macrodomain Ori organization protein MaoP compare
NOLOHH_14200 sixA -2.4 -1.9 phosphohistidine phosphatase SixA compare
NOLOHH_09595 mdh -2.4 -5.8 malate dehydrogenase compare
NOLOHH_10735 metC -2.4 -11.3 cystathionine beta-lyase compare
NOLOHH_04005 Leu_trna -2.3 -1.4 tRNA-Leu(caa) compare
NOLOHH_20210 yciH -2.3 -1.1 stress response translation initiation inhibitor YciH compare
NOLOHH_04655 epmB -2.3 -1.7 EF-P beta-lysylation protein EpmB compare
NOLOHH_13640 arsC -2.3 -1.6 ArsC family reductase compare
NOLOHH_18070 rsxB -2.3 -1.9 electron transport complex subunit RsxB compare
NOLOHH_03445 -2.2 -2.1 thr operon leader peptide compare
NOLOHH_17665 ppsA -2.2 -2.9 phosphoenolpyruvate synthase compare
NOLOHH_02710 yadN -2.2 -1.4 Uncharacterized fimbrial-like protein YadN compare
NOLOHH_21270 bssS -2.2 -2.6 biofilm formation regulator BssS compare
NOLOHH_18245 mlc -2.2 -1.3 DNA-binding transcriptional repressor Mlc compare
NOLOHH_19330 ydcJ -2.2 -2.3 Uncharacterized protein YdcJ compare
NOLOHH_12185 cysJ -2.2 -9.9 NADPH-dependent assimilatory sulfite reductase flavoprotein subunit compare
NOLOHH_19215 ydcY -2.2 -1.3 Uncharacterized protein YdcY compare
NOLOHH_21850 pyrD -2.2 -2.4 quinone-dependent dihydroorotate dehydrogenase compare
NOLOHH_06810 hdfR -2.2 -11.2 HTH-type transcriptional regulator HdfR compare
NOLOHH_02390 gmhB -2.1 -1.6 D-glycero-beta-D-manno-heptose 1,7-bisphosphate 7-phosphatase compare
NOLOHH_16425 yecC -2.1 -1.9 L-cystine ABC transporter ATP-binding protein YecC compare
NOLOHH_21045 lpoB -2.1 -2.2 penicillin-binding protein activator LpoB compare
NOLOHH_08735 glpR -2.1 -6.7 DeoR/GlpR family transcriptional regulator compare
NOLOHH_13880 cysK -2.1 -5.6 cysteine synthase A compare
NOLOHH_18920 pqqL -2.1 -2.0 putative zinc protease PqqL compare
NOLOHH_16835 pyk -2.1 -2.7 pyruvate kinase compare
NOLOHH_19380 aldA -2.1 -2.9 aldehyde dehydrogenase compare
NOLOHH_12310 rpoS -2.0 -8.2 RNA polymerase sigma factor RpoS compare
NOLOHH_21940 aspC -2.0 -1.7 aspartate transaminase compare
NOLOHH_23190 nadA -2.0 -2.6 quinolinate synthase NadA compare
NOLOHH_23315 sucA -1.9 -1.3 2-oxoglutarate dehydrogenase E1 component compare
NOLOHH_01170 ybaA -1.9 -1.0 Uncharacterized protein YbaA compare
NOLOHH_07125 -1.9 -2.5 tRNA uridine-5-carboxymethylaminomethyl(34) synthesis GTPase MnmE compare
NOLOHH_09905 nusA -1.9 -1.9 Transcription termination/antitermination protein NusA compare
NOLOHH_20845 pdeG -1.9 -0.9 putative cyclic di-GMP phosphodiesterase PdeG compare
NOLOHH_16805 -1.9 -1.0 maltose ABC transporter permease compare
NOLOHH_20555 chaB -1.9 -1.5 putative cation transport regulator ChaB compare
NOLOHH_18825 lsrR -1.9 -2.4 transcriptional regulator LsrR compare
NOLOHH_12890 aroF -1.9 -6.0 3-deoxy-7-phosphoheptulonate synthase AroF compare
NOLOHH_06385 fre -1.9 -5.3 NAD(P)H-flavin reductase compare
NOLOHH_13075 lepA -1.9 -3.3 translation elongation factor 4 compare
NOLOHH_00050 -1.9 -1.6 hypothetical protein compare
NOLOHH_11125 yggS -1.8 -5.7 pyridoxal phosphate homeostasis protein compare
NOLOHH_23145 galE -1.8 -3.4 UDP-glucose 4-epimerase GalE compare
NOLOHH_15015 fruB -1.8 -2.3 fused PTS fructose transporter subunit IIA/HPr protein compare
NOLOHH_23865 -1.8 -1.4 hypothetical protein compare
NOLOHH_09685 gltB -1.8 -12.3 glutamate synthase large subunit compare
NOLOHH_06590 cyaA -1.8 -4.8 class I adenylate cyclase compare
NOLOHH_14470 nuoC -1.8 -4.5 NADH-quinone oxidoreductase subunit C/D compare
NOLOHH_03170 surA -1.7 -2.8 peptidylprolyl isomerase SurA compare
NOLOHH_06460 metR -1.7 -8.2 HTH-type transcriptional regulator MetR compare
NOLOHH_17785 sufD -1.7 -1.2 Fe-S cluster assembly protein SufD compare
NOLOHH_17395 ynjA -1.7 -1.1 Uncharacterized protein YnjA compare
NOLOHH_08605 yrhA -1.7 -0.8 protein YrhA compare
NOLOHH_14520 nuoN -1.7 -3.4 NADH-quinone oxidoreductase subunit NuoN compare
NOLOHH_14780 apbE -1.7 -1.9 FAD:protein FMN transferase ApbE compare
NOLOHH_21050 -1.7 -1.0 DUF1425 domain-containing protein compare
NOLOHH_01355 thiI -1.7 -3.5 tRNA sulfurtransferase compare
NOLOHH_08900 aroK -1.7 -1.1 shikimate kinase AroK compare
NOLOHH_19280 sutR -1.6 -0.8 DNA-binding transcriptional regulator SutR compare
NOLOHH_06455 metE -1.6 -10.8 5-methyltetrahydropteroyltriglutamate--homocystei ne S-methyltransferase compare
NOLOHH_17355 gdhA -1.6 -1.7 NADP-specific glutamate dehydrogenase compare
NOLOHH_07435 spoT -1.6 -2.5 bifunctional GTP diphosphokinase/guanosine-3',5'-bis pyrophosphate 3'-pyrophosphohydrolase compare
NOLOHH_17515 cedA -1.6 -0.9 cell division activator CedA compare
NOLOHH_09680 gltD -1.6 -7.5 glutamate synthase subunit GltD compare
NOLOHH_14595 arnT -1.6 -1.5 lipid IV(A) 4-amino-4-deoxy-L-arabinosyltransferase compare
NOLOHH_08600 yrhD -1.6 -2.2 Protein YrhD compare
NOLOHH_17230 cdgI -1.6 -2.0 putative diguanylate cyclase CdgI compare
NOLOHH_18050 rsxE -1.6 -1.4 electron transport complex subunit RsxE compare


Specific Phenotypes

For 23 genes in this experiment

For carbon source L-Rhamnose in Escherichia coli ECOR27

For carbon source L-Rhamnose across organisms