Experiment set2S745 for Escherichia coli ECOR27

L-Rhamnose

Group: carbon source
Media: M9_plus_L-Rhamnose + L-Rhamnose (20 mM)
Culturing: Ecoli_ECOR27_ML1, 48 well microplate, Aerobic, at 37 (C), shaken=double orbital, continuous, 205cpm
By: Lucas on 12/6/2024

Specific Phenotypes

For 23 genes in this experiment

For carbon source L-Rhamnose in Escherichia coli ECOR27

For carbon source L-Rhamnose across organisms

SEED Subsystems

Subsystem	#Specific
L-rhamnose utilization	8
Transport of Manganese	2
Glycerol and Glycerol-3-phosphate Uptake and Utilization	1
Iron acquisition in Vibrio	1
Lactate utilization	1
Nitric oxide synthase	1
Oxidative stress	1
Proteolysis in bacteria, ATP-dependent	1
Respiratory dehydrogenases 1	1

Metabolic Maps

Color code by fitness: see overview map or list of maps.

Maps containing gene(s) with specific phenotypes:

• Fructose and mannose metabolism
• Pentose and glucuronate interconversions
• Nucleotide sugars metabolism
• Polyketide sugar unit biosynthesis
• Pyruvate metabolism

MetaCyc Pathways

Pathways that contain genes with specific phenotypes:

Pathway	#Steps	#Present	#Specific
L-rhamnose degradation I	5	5	4
superoxide radicals degradation	2	2	1
L-lactaldehyde degradation (aerobic)	2	2	1
superpathway of fucose and rhamnose degradation	12	12	5
methylglyoxal degradation IV	3	3	1
methylglyoxal degradation V	3	3	1
L-lyxose degradation	4	4	1
reactive oxygen species degradation	4	4	1
ethene biosynthesis III (microbes)	7	6	1
superpathway of methylglyoxal degradation	8	7	1
lactate fermentation to acetate, CO2 and hydrogen (Desulfovibrionales)	8	5	1
peptidoglycan maturation (meso-diaminopimelate containing)	12	6	1
superpathway of pentose and pentitol degradation	42	16	1