Experiment set2S734 for Escherichia coli ECOR27

Casamino-acids

Group: carbon source
Media: M9_plus_Casamino-acids + Casamino-acids (5 mg/mL)
Culturing: Ecoli_ECOR27_ML1, 48 well microplate, Aerobic, at 37 (C), shaken=double orbital, continuous, 205cpm
By: Lucas on 12/6/2024

Specific Phenotypes

For 4 genes in this experiment

For carbon source Casamino-acids in Escherichia coli ECOR27

For carbon source Casamino-acids across organisms

SEED Subsystems

Subsystem	#Specific
NAD and NADP cofactor biosynthesis global	2
NAD regulation	2
Coenzyme A Biosynthesis	1
Glutamine, Glutamate, Aspartate and Asparagine Biosynthesis	1

Metabolic Maps

Color code by fitness: see overview map or list of maps.

Maps containing gene(s) with specific phenotypes:

• Alanine and aspartate metabolism
• Nicotinate and nicotinamide metabolism
• Biosynthesis of alkaloids derived from ornithine, lysine and nicotinic acid
• Fructose and mannose metabolism
• Ascorbate and aldarate metabolism
• C21-Steroid hormone metabolism
• Glycine, serine and threonine metabolism
• Bisphenol A degradation
• Nucleotide sugars metabolism
• Polyketide sugar unit biosynthesis
• Aminosugars metabolism
• Linoleic acid metabolism
• Tetrachloroethene degradation
• Benzoate degradation via CoA ligation
• Butanoate metabolism
• Pantothenate and CoA biosynthesis
• Retinol metabolism
• Nitrogen metabolism
• Alkaloid biosynthesis I
• Insect hormone biosynthesis
• Biosynthesis of unsaturated fatty acids
• Biosynthesis of type II polyketide products
• Biosynthesis of alkaloids derived from shikimate pathway

MetaCyc Pathways

Pathways that contain genes with specific phenotypes:

Pathway	#Steps	#Present	#Specific
L-glutamate degradation II	2	2	1
L-aspartate degradation II (aerobic)	3	3	1
L-aspartate degradation III (anaerobic)	3	3	1
NAD de novo biosynthesis IV (anaerobic)	6	5	2
NAD de novo biosynthesis I	6	5	2
phosphopantothenate biosynthesis I	4	4	1
superpathway of L-aspartate and L-asparagine biosynthesis	4	4	1
NAD biosynthesis from 2-amino-3-carboxymuconate semialdehyde	4	3	1
phosphopantothenate biosynthesis III (archaea)	4	2	1
nicotine biosynthesis	9	3	2
NAD de novo biosynthesis III	6	4	1
superpathway of nicotine biosynthesis	12	4	2
L-canavanine degradation II	6	1	1
superpathway of coenzyme A biosynthesis I (bacteria)	9	9	1
NAD de novo biosynthesis II (from tryptophan)	9	3	1
superpathway of coenzyme A biosynthesis II (plants)	10	5	1
aspartate superpathway	25	24	2
superpathway of NAD biosynthesis in eukaryotes	14	7	1