Experiment set2S733 for Escherichia coli ECOR27

Compare to:

L-Arabinose

200 most detrimental genes:

  gene name fitness t score description  
NOLOHH_22075 pflA +2.1 3.3 pyruvate formate lyase 1-activating protein compare
NOLOHH_18130 uidB +1.9 4.1 glucuronide transporter compare
NOLOHH_18990 atoD +1.9 3.1 succinyl-CoA--3-ketoacid-CoA transferase compare
NOLOHH_16335 fliH +1.8 1.7 flagellar assembly protein FliH compare
NOLOHH_18900 ydeN +1.8 3.7 Uncharacterized sulfatase YdeN compare
NOLOHH_17560 ydiY +1.7 3.5 Uncharacterized protein YdiY compare
NOLOHH_19535 hslJ +1.7 2.3 heat shock protein HslJ compare
NOLOHH_18310 rspA +1.7 3.8 starvation-sensing protein RspA compare
NOLOHH_20210 yciH +1.6 2.7 stress response translation initiation inhibitor YciH compare
NOLOHH_00740 dksA +1.6 3.8 conjugal transfer protein TraR compare
NOLOHH_18035 dtpA +1.6 3.7 dipeptide/tripeptide permease DtpA compare
NOLOHH_16805 +1.6 2.2 maltose ABC transporter permease compare
NOLOHH_18085 ydgT +1.5 3.4 transcription modulator YdgT compare
NOLOHH_14120 emrK +1.5 3.7 multidrug efflux MFS transporter periplasmic adaptor subunit EmrK compare
NOLOHH_18765 glsB +1.4 2.0 glutaminase B compare
NOLOHH_24475 +1.4 1.9 pilus assembly protein compare
NOLOHH_11480 sdhE +1.3 1.5 FAD assembly factor SdhE compare
NOLOHH_20940 potB +1.3 1.9 spermidine/putrescine ABC transporter permease PotB compare
NOLOHH_16080 +1.3 1.3 hypothetical protein compare
NOLOHH_19420 ydbD +1.3 0.7 Uncharacterized protein YdbD compare
NOLOHH_20370 yciA +1.3 2.9 acyl-CoA thioester hydrolase YciA compare
NOLOHH_09610 zapG +1.2 4.4 Z-ring associated protein ZapG compare
NOLOHH_16380 fliT +1.2 3.7 flagella biosynthesis regulatory protein FliT compare
NOLOHH_21735 yccX +1.2 2.5 acylphosphatase compare
NOLOHH_06250 hemN +1.2 6.5 oxygen-independent coproporphyrinogen III oxidase compare
NOLOHH_23480 pgm +1.2 2.9 phosphoglucomutase (alpha-D-glucose-1,6-bisphosphate-dependent) compare
NOLOHH_20450 tdk +1.2 3.2 thymidine kinase compare
NOLOHH_14075 ypdI +1.2 1.8 colanic acid biosynthesis lipoprotein YpdI compare
NOLOHH_18680 eamA +1.2 2.6 O-acetylserine/cysteine exporter compare
NOLOHH_20820 ymgG +1.2 1.2 UPF0757 protein YmgG compare
NOLOHH_18540 +1.2 1.9 Tail tube protein compare
NOLOHH_14845 napB +1.2 1.8 nitrate reductase cytochrome c-type subunit compare
NOLOHH_17530 ybcI +1.2 2.0 metal-dependent hydrolase compare
NOLOHH_16505 ftnB +1.2 1.3 non-heme ferritin-like protein compare
NOLOHH_18800 lsrF +1.2 1.9 3-hydroxy-5-phosphonooxypentane-2,4-dione thiolase compare
NOLOHH_19350 mokB +1.2 1.0 IS3 family transposase compare
NOLOHH_00565 +1.2 1.4 Lambda prophage-derived head-to-tail joining protein W compare
NOLOHH_20700 emtA +1.2 1.8 membrane-bound lytic murein transglycosylase EmtA compare
NOLOHH_20795 ycgJ +1.1 0.9 Uncharacterized protein YcgJ compare
NOLOHH_00545 +1.1 1.7 Major capsid protein compare
NOLOHH_15885 yeeD +1.1 2.1 Putative sulfur carrier protein YeeD compare
NOLOHH_19340 trg +1.1 1.9 methyl-accepting chemotaxis protein Trg compare
NOLOHH_14790 alkB +1.1 2.2 DNA oxidative demethylase AlkB compare
NOLOHH_19055 fdnH +1.1 2.7 formate dehydrogenase N subunit beta compare
NOLOHH_17330 ydjA +1.1 1.2 NAD(P)H nitroreductase compare
NOLOHH_24635 repL +1.1 1.5 Positive regulator of RepFIC repA1 expression compare
NOLOHH_19485 paaB +1.1 0.6 1,2-phenylacetyl-CoA epoxidase subunit B compare
NOLOHH_22440 pdeI +1.1 1.8 putative cyclic di-GMP phosphodiesterase PdeI compare
NOLOHH_22705 +1.1 2.2 hypothetical protein compare
NOLOHH_20715 +1.1 1.9 hypothetical protein compare
NOLOHH_18970 ddpC +1.1 1.6 D,D-dipeptide ABC transporter permease compare
NOLOHH_09845 greA +1.1 1.4 transcription elongation factor GreA compare
NOLOHH_17775 sufB +1.1 2.7 Fe-S cluster assembly protein SufB compare
NOLOHH_23545 nagA +1.1 4.1 N-acetylglucosamine-6-phosphate deacetylase compare
NOLOHH_09585 yhcN +1.0 2.3 peroxide/acid stress response protein YhcN compare
NOLOHH_22880 +1.0 3.2 phage holin, lambda family compare
NOLOHH_02285 hcp1,tssD1 +1.0 1.0 type VI secretion system protein, Hcp family compare
NOLOHH_18050 rsxE +1.0 1.6 electron transport complex subunit RsxE compare
NOLOHH_17395 ynjA +1.0 1.4 Uncharacterized protein YnjA compare
NOLOHH_00790 fimA +1.0 1.0 type 1 fimbrial major subunit FimA compare
NOLOHH_20945 potC +1.0 3.2 spermidine/putrescine ABC transporter permease PotC compare
NOLOHH_08800 feoC +1.0 3.1 [Fe-S]-dependent transcriptional repressor FeoC compare
NOLOHH_16635 yecM +1.0 1.6 VOC family protein compare
NOLOHH_22285 artQ +1.0 1.3 arginine ABC transporter permease ArtQ compare
NOLOHH_17220 yeaK +1.0 1.9 mischarged aminoacyl-tRNA deacylase compare
NOLOHH_12000 gcvA +1.0 4.2 glycine cleavage system transcriptional regulator GcvA compare
NOLOHH_18925 gadB +1.0 1.0 glutamate decarboxylase compare
NOLOHH_19500 tynA +1.0 0.9 primary-amine oxidase compare
NOLOHH_01630 yaiS +1.0 1.5 Uncharacterized deacetylase YaiS compare
NOLOHH_01500 rdgC +1.0 2.9 recombination-associated protein RdgC compare
NOLOHH_13115 shoB +1.0 1.1 Small toxic protein ShoB compare
NOLOHH_06520 +1.0 0.7 DUF3289 domain-containing protein compare
NOLOHH_19635 +1.0 0.5 hypothetical protein compare
NOLOHH_18660 dgcZ +1.0 0.7 diguanylate cyclase DgcZ compare
NOLOHH_06755 ppiC +1.0 1.9 peptidylprolyl isomerase PpiC compare
NOLOHH_06100 yiiF +1.0 3.4 Uncharacterized protein YiiF compare
NOLOHH_12310 rpoS +1.0 4.7 RNA polymerase sigma factor RpoS compare
NOLOHH_04510 hflK +1.0 3.2 FtsH protease activity modulator HflK compare
NOLOHH_16235 vsr +1.0 2.7 VSPR family DNA mismatch endonuclease compare
NOLOHH_17145 dmlA +1.0 1.8 multifunctional D-malate/3-isopropylmalate/tartarate dehydrogenase compare
NOLOHH_20550 chaC +1.0 1.3 glutathione-specific gamma-glutamylcyclotransferase compare
NOLOHH_16075 +1.0 1.7 HNH endonuclease compare
NOLOHH_07560 rfaB +1.0 3.5 UDP-glucose--(glucosyl)LPS alpha-1,2-glucosyltransferase compare
NOLOHH_04470 yjfJ +1.0 2.4 Uncharacterized protein YjfJ compare
NOLOHH_07710 yibG +1.0 0.9 Uncharacterized protein YibG compare
NOLOHH_19455 paaC +0.9 1.3 3-hydroxyacyl-CoA dehydrogenase PaaC compare
NOLOHH_05880 hslV +0.9 0.5 ATP-dependent protease subunit HslV compare
NOLOHH_23730 rsfS +0.9 3.9 ribosome silencing factor compare
NOLOHH_18825 lsrR +0.9 1.8 transcriptional regulator LsrR compare
NOLOHH_00345 +0.9 2.5 Conjugal transfer protein compare
NOLOHH_21005 bhsA +0.9 2.5 multiple stress resistance protein BhsA compare
NOLOHH_04460 +0.9 2.5 DUF2491 domain-containing protein compare
NOLOHH_06730 trxA +0.9 1.5 thioredoxin TrxA compare
NOLOHH_02510 skp +0.9 0.9 molecular chaperone Skp compare
NOLOHH_19050 fdnI +0.9 3.3 formate dehydrogenase-N subunit gamma compare
NOLOHH_21955 ycbK +0.9 2.2 Uncharacterized protein YcbK compare
NOLOHH_21410 ghrA +0.9 2.3 glyoxylate/hydroxypyruvate reductase GhrA compare
NOLOHH_01795 yahM +0.9 2.1 Uncharacterized protein YahM compare
NOLOHH_18820 lsrA +0.9 2.1 autoinducer 2 ABC transporter ATP-binding protein LsrA compare
NOLOHH_17655 aroH +0.9 1.3 3-deoxy-7-phosphoheptulonate synthase AroH compare
NOLOHH_13365 rodZ +0.9 2.2 cytoskeleton protein RodZ compare
NOLOHH_20180 yciW +0.9 2.9 Uncharacterized protein YciW compare
NOLOHH_21090 pabC +0.9 1.0 aminodeoxychorismate lyase compare
NOLOHH_18185 ydgI +0.9 2.1 Putative arginine/ornithine antiporter compare
NOLOHH_18245 mlc +0.9 1.0 DNA-binding transcriptional repressor Mlc compare
NOLOHH_00240 +0.9 2.6 Entry exclusion protein compare
NOLOHH_17720 ydiB +0.9 1.5 quinate/shikimate dehydrogenase compare
NOLOHH_20750 umuC +0.9 1.4 DNA polymerase V catalytic protein compare
NOLOHH_12770 +0.9 1.3 ATP-binding protein compare
NOLOHH_16425 yecC +0.9 1.8 L-cystine ABC transporter ATP-binding protein YecC compare
NOLOHH_05690 fabR +0.9 4.1 HTH-type transcriptional repressor FabR compare
NOLOHH_17160 yeaR +0.9 0.9 Uncharacterized protein YeaR compare
NOLOHH_14725 yfaT +0.9 2.3 DUF1175 domain-containing protein compare
NOLOHH_02175 yncI +0.9 1.4 ISAs1 family transposase compare
NOLOHH_05165 +0.8 1.8 hypothetical protein compare
NOLOHH_23755 dacA +0.8 3.1 D-alanyl-D-alanine carboxypeptidase DacA compare
NOLOHH_17840 ydhU +0.8 0.8 Putative cytochrome YdhU compare
NOLOHH_11235 cmtB +0.8 1.7 PTS mannitol transporter subunit IIA compare
NOLOHH_16340 fliG +0.8 2.1 flagellar motor switch protein FliG compare
NOLOHH_23170 aroG +0.8 2.1 3-deoxy-7-phosphoheptulonate synthase AroG compare
NOLOHH_19490 paaA +0.8 1.5 1,2-phenylacetyl-CoA epoxidase subunit A compare
NOLOHH_18135 uidC +0.8 2.8 glucuronide uptake porin UidC compare
NOLOHH_20300 yciO +0.8 1.8 L-threonylcarbamoyladenylate synthase compare
NOLOHH_24225 traJ +0.8 1.0 conjugal transfer transcriptional regulator TraJ compare
NOLOHH_20735 fadR +0.8 0.9 fatty acid metabolism transcriptional regulator FadR compare
NOLOHH_09695 arcB +0.8 2.3 aerobic respiration two-component sensor histidine kinase ArcB compare
NOLOHH_06310 yihD +0.8 2.4 Protein YihD compare
NOLOHH_14810 yojO +0.8 1.1 Uncharacterized protein YojO compare
NOLOHH_19785 +0.8 1.0 DUF977 domain-containing protein compare
NOLOHH_01020 ybaQ +0.8 1.2 HigA family addiction module antitoxin compare
NOLOHH_11920 +0.8 1.8 DUF2509 domain-containing protein compare
NOLOHH_22615 ybiE +0.8 1.9 Protein YbiE compare
NOLOHH_13165 qseG +0.8 4.3 two-component system QseEF-associated lipoprotein QseG compare
NOLOHH_18885 ydeP +0.8 1.4 acid resistance putative oxidoreductase YdeP compare
NOLOHH_19090 narH +0.8 1.5 nitrate reductase subunit beta compare
NOLOHH_06530 corA +0.8 2.5 magnesium/cobalt transporter CorA compare
NOLOHH_20670 dhaL +0.8 1.3 dihydroxyacetone kinase subunit DhaL compare
NOLOHH_23620 corC +0.8 1.5 CNNM family magnesium/cobalt transport protein CorC compare
NOLOHH_16820 +0.8 1.0 esterase compare
NOLOHH_14630 nudI +0.8 2.1 nucleoside triphosphatase NudI compare
NOLOHH_04850 pmrR +0.8 2.0 Putative membrane protein PmrR compare
NOLOHH_22875 +0.8 2.3 Endolysin compare
NOLOHH_11530 yqfG +0.8 1.7 Uncharacterized protein YqfG compare
NOLOHH_18760 sad +0.8 2.5 succinate-semialdehyde dehydrogenase compare
NOLOHH_00875 glxK +0.8 2.3 glycerate 3-kinase compare
NOLOHH_01945 glxA +0.8 1.9 AraC family transcriptional regulator compare
NOLOHH_23920 ybdD +0.8 2.0 Uncharacterized protein YbdD compare
NOLOHH_12405 hypB +0.8 1.4 hydrogenase nickel incorporation protein HypB compare
NOLOHH_00635 ybcO +0.8 1.9 Putative nuclease YbcO compare
NOLOHH_17325 sppA +0.8 2.0 signal peptide peptidase SppA compare
NOLOHH_19190 yncD +0.8 1.1 putative TonB-dependent receptor YncD compare
NOLOHH_04910 phnG +0.8 1.3 phosphonate C-P lyase system protein PhnG compare
NOLOHH_20095 pspA +0.8 2.7 phage shock protein PspA compare
NOLOHH_03335 +0.8 1.3 Fimbrial protein compare
NOLOHH_04205 fbp +0.8 3.7 class 1 fructose-bisphosphatase compare
NOLOHH_14910 yejM +0.8 1.5 LPS biosynthesis-modulating metalloenzyme YejM compare
NOLOHH_15635 wzb +0.8 2.7 low molecular weight protein-tyrosine-phosphatase Wzb compare
NOLOHH_13775 hemF +0.8 2.0 oxygen-dependent coproporphyrinogen oxidase compare
NOLOHH_24370 +0.8 1.1 hypothetical protein compare
NOLOHH_24495 +0.8 1.0 lngG compare
NOLOHH_23550 nagC +0.8 2.0 DNA-binding transcriptional regulator NagC compare
NOLOHH_20640 ychH +0.8 2.5 stress-induced protein YchH compare
NOLOHH_21560 yccJ +0.7 1.5 Uncharacterized protein YccJ compare
NOLOHH_09785 mlaD +0.7 4.4 outer membrane lipid asymmetry maintenance protein MlaD compare
NOLOHH_10580 ubiK +0.7 1.9 ubiquinone biosynthesis accessory factor UbiK compare
NOLOHH_22525 mntR +0.7 1.7 manganese-binding transcriptional regulator MntR compare
NOLOHH_17800 ldtE +0.7 1.0 L,D-transpeptidase LdtE compare
NOLOHH_16395 +0.7 2.1 flagellin FliC compare
NOLOHH_22220 aqpZ +0.7 2.1 aquaporin Z compare
NOLOHH_11690 +0.7 0.8 flhB HrpN YscU SpaS family protein compare
NOLOHH_08830 envZ +0.7 3.3 two-component system sensor histidine kinase EnvZ compare
NOLOHH_19705 +0.7 1.1 ParB-like nuclease compare
NOLOHH_18080 ydgK +0.7 0.5 Inner membrane protein YdgK compare
NOLOHH_02255 tssL +0.7 2.8 Type VI secretion system protein TssL compare
NOLOHH_13120 yfhL +0.7 1.8 4Fe-4S dicluster ferredoxin YfhL compare
NOLOHH_21190 flgE +0.7 2.0 flagellar hook protein FlgE compare
NOLOHH_15925 pduU +0.7 1.1 propanediol utilization microcompartment protein PduU compare
NOLOHH_01830 yhfF +0.7 1.6 ASCH domain-containing protein compare
NOLOHH_09470 dusB +0.7 3.1 tRNA dihydrouridine synthase DusB compare
NOLOHH_18960 ddpA +0.7 1.3 putative D,D-dipeptide-binding periplasmic protein DdpA compare
NOLOHH_15400 +0.7 0.9 hypothetical protein compare
NOLOHH_20025 ycjV +0.7 0.9 Uncharacterized ABC transporter ATP-binding protein YcjV compare
NOLOHH_21160 flgK +0.7 1.6 flagellar hook-associated protein FlgK compare
NOLOHH_18965 ddpB +0.7 0.9 putative D,D-dipeptide transport system permease protein DdpB compare
NOLOHH_24510 +0.7 1.6 pilus biosynthesis protein compare
NOLOHH_19480 paaC +0.7 1.1 phenylacetate-CoA oxygenase subunit PaaC compare
NOLOHH_07725 yhhH +0.7 0.8 Uncharacterized protein YhhH compare
NOLOHH_05885 hslU +0.7 1.2 HslU--HslV peptidase ATPase subunit compare
NOLOHH_16545 flhC +0.7 1.7 flagellar transcriptional regulator FlhC compare
NOLOHH_17405 ydjY +0.7 1.4 Uncharacterized protein YdjY compare
NOLOHH_21010 comR +0.7 1.4 TetR family copper-responsive transcriptional repressor ComR compare
NOLOHH_12220 casB +0.7 1.5 type I-E CRISPR-associated protein Cse2/CasB compare
NOLOHH_12540 pncC +0.7 2.4 nicotinamide-nucleotide amidase compare
NOLOHH_19930 abgT +0.7 1.6 p-aminobenzoyl-glutamate transporter compare
NOLOHH_03680 yjjA +0.7 2.1 Uncharacterized protein YjjA compare
NOLOHH_12520 srlB +0.7 0.6 PTS glucitol/sorbitol transporter subunit IIA compare
NOLOHH_13480 arsC +0.7 0.5 arsenate reductase (glutaredoxin) compare
NOLOHH_17970 ydhF +0.7 1.1 Oxidoreductase YdhF compare
NOLOHH_04420 ulaR +0.7 2.0 HTH-type transcriptional regulator UlaR compare
NOLOHH_15930 pduT +0.7 2.0 propanediol utilization microcompartment protein PduT compare


Specific Phenotypes

For 5 genes in this experiment

For carbon source L-Arabinose in Escherichia coli ECOR27

For carbon source L-Arabinose across organisms