Experiment set2S719 for Escherichia coli ECRC100

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Casamino-acids

200 most important genes:

  gene name fitness t score description  
OKFHMN_22840 nuoA -8.2 -3.0 NADH-quinone oxidoreductase subunit NuoA compare
OKFHMN_21810 purM -8.0 -12.2 Phosphoribosylformylglycinamidine cyclo-ligase compare
OKFHMN_03730 pyrC -7.6 -3.0 dihydroorotase compare
OKFHMN_21930 purC -7.3 -4.3 phosphoribosylaminoimidazolesuccinocarboxamide synthase compare
OKFHMN_13315 purD -7.3 -8.0 Phosphoribosylamine--glycine ligase compare
OKFHMN_22660 pdxB -7.3 -7.1 4-phosphoerythronate dehydrogenase PdxB compare
OKFHMN_21805 purN -7.1 -10.0 phosphoribosylglycinamide formyltransferase compare
OKFHMN_05295 pyrD -6.8 -3.3 quinone-dependent dihydroorotate dehydrogenase compare
OKFHMN_22880 nuoJ -6.4 -3.3 NADH-quinone oxidoreductase subunit J compare
OKFHMN_10940 carB -6.4 -15.4 carbamoyl-phosphate synthase large subunit compare
OKFHMN_22715 purF -6.3 -8.4 amidophosphoribosyltransferase compare
OKFHMN_21470 purL -6.3 -13.4 phosphoribosylformylglycinamidine synthase compare
OKFHMN_13310 purH -6.3 -12.7 bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase compare
OKFHMN_11945 fbp -6.1 -12.2 class 1 fructose-bisphosphatase compare
OKFHMN_08485 parD -6.0 -2.2 Antitoxin ParD compare
OKFHMN_22875 nuoI -5.9 -2.2 NADH-quinone oxidoreductase subunit NuoI compare
OKFHMN_25595 yedJ -5.8 -1.2 phosphohydrolase compare
OKFHMN_21425 pdxJ -5.7 -3.3 pyridoxine 5'-phosphate synthase compare
OKFHMN_18120 rbfA -5.6 -1.2 30S ribosome-binding factor RbfA compare
OKFHMN_26505 mntP -5.6 -1.2 manganese efflux pump MntP compare
OKFHMN_24275 dcd -5.5 -2.0 dCTP deaminase compare
OKFHMN_04420 -5.4 -1.2 Uncharacterized function compare
OKFHMN_07835 purE -5.4 -1.6 N5-carboxyaminoimidazole ribonucleotide mutase compare
OKFHMN_26370 -5.4 -1.1 hypothetical protein compare
OKFHMN_25560 hiuH -5.3 -1.1 hydroxyisourate hydrolase compare
OKFHMN_27265 sufD -5.2 -2.5 Fe-S cluster assembly protein SufD compare
OKFHMN_14100 glnA -5.2 -3.1 glutamate--ammonia ligase compare
OKFHMN_14835 atpC -5.1 -1.1 F0F1 ATP synthase subunit epsilon compare
OKFHMN_12230 purA -5.0 -3.5 adenylosuccinate synthase compare
OKFHMN_07840 purK -5.0 -7.1 5-(carboxyamino)imidazole ribonucleotide synthase compare
OKFHMN_02670 trpB -4.9 -4.8 tryptophan synthase subunit beta compare
OKFHMN_00135 sopA -4.8 -3.3 plasmid-partitioning protein SopA compare
OKFHMN_02655 trpE -4.8 -6.7 anthranilate synthase component I compare
OKFHMN_15600 pyrE -4.6 -3.3 Orotate phosphoribosyltransferase compare
OKFHMN_10945 carA -4.5 -9.1 carbamoyl phosphate synthase small subunit compare
OKFHMN_19515 ubiI -4.5 -2.3 FAD-dependent 2-octaprenylphenol hydroxylase compare
OKFHMN_23410 yeiR -4.1 -2.8 zinc-binding GTPase YeiR compare
OKFHMN_22865 nuoG -3.9 -9.6 NADH-quinone oxidoreductase subunit NuoG compare
OKFHMN_11865 pyrB -3.9 -4.1 aspartate carbamoyltransferase compare
OKFHMN_17810 zapG -3.9 -2.1 Z-ring associated protein ZapG compare
OKFHMN_02675 trpA -3.9 -2.8 tryptophan synthase subunit alpha compare
OKFHMN_21760 guaB -3.9 -3.6 IMP dehydrogenase compare
OKFHMN_22900 nuoN -3.7 -6.3 NADH-quinone oxidoreductase subunit NuoN compare
OKFHMN_02550 pyrF -3.6 -2.0 orotidine-5'-phosphate decarboxylase compare
OKFHMN_15310 etgA -3.5 -1.7 type III secretion system LEE muramidase EtgA compare
OKFHMN_22845 nuoB -3.5 -6.6 NADH-quinone oxidoreductase subunit NuoB compare
OKFHMN_10830 pdxA -3.4 -6.3 4-hydroxythreonine-4-phosphate dehydrogenase PdxA compare
OKFHMN_06760 nadA -3.4 -6.2 quinolinate synthase NadA compare
OKFHMN_10685 cra -3.4 -5.2 catabolite repressor/activator compare
OKFHMN_17795 mdh -3.3 -7.3 malate dehydrogenase compare
OKFHMN_02080 -3.3 -2.7 transcriptional regulator compare
OKFHMN_17830 sspA -3.3 -2.0 stringent starvation protein A compare
OKFHMN_26100 flhD -3.2 -1.5 flagellar transcriptional regulator FlhD compare
OKFHMN_13160 yjbE -3.1 -2.5 Uncharacterized protein YjbE compare
OKFHMN_22855 nuoE -3.1 -1.8 NADH-quinone oxidoreductase subunit NuoE compare
OKFHMN_18140 pnp -3.0 -5.4 polyribonucleotide nucleotidyltransferase compare
OKFHMN_03600 yceD -3.0 -3.2 23S rRNA accumulation protein YceD compare
OKFHMN_26925 astE -3.0 -2.2 succinylglutamate desuccinylase compare
OKFHMN_05490 serC -2.9 -6.1 3-phosphoserine/phosphohydroxythreonine transaminase compare
OKFHMN_05385 aspC -2.7 -1.3 aspartate transaminase compare
OKFHMN_06945 sdhD -2.6 -1.9 succinate dehydrogenase membrane anchor subunit compare
OKFHMN_22890 nuoL -2.6 -5.9 NADH-quinone oxidoreductase subunit L compare
OKFHMN_00130 sopA -2.5 -4.0 plasmid-partitioning protein SopA compare
OKFHMN_22860 nuoF -2.4 -3.1 NADH-quinone oxidoreductase subunit NuoF compare
OKFHMN_06940 sdhA -2.4 -3.8 succinate dehydrogenase flavoprotein subunit compare
OKFHMN_06920 odhB -2.3 -1.4 2-oxoglutarate dehydrogenase complex dihydrolipoyllysine-residue succinyltransferase compare
OKFHMN_04580 efeU -2.3 -1.2 Ferrous iron permease EfeU compare
OKFHMN_10530 nadC -2.2 -6.8 carboxylating nicotinate-nucleotide diphosphorylase compare
OKFHMN_26400 yobA -2.2 -1.2 CopC domain-containing protein YobA compare
OKFHMN_06910 sucD -2.2 -1.8 succinate--CoA ligase subunit alpha compare
OKFHMN_25655 fliR -2.2 -1.4 flagellar type III secretion system protein FliR compare
OKFHMN_26250 nudB -2.1 -4.2 dihydroneopterin triphosphate diphosphatase compare
OKFHMN_22870 nuoH -2.1 -1.6 NADH-quinone oxidoreductase subunit NuoH compare
OKFHMN_21360 srmB -2.1 -4.0 ATP-dependent RNA helicase SrmB compare
OKFHMN_26645 yoaG -2.1 -1.3 Protein YoaG compare
OKFHMN_13380 thiE -2.1 -6.4 thiamine phosphate synthase compare
OKFHMN_26520 manZ -2.1 -2.1 PTS mannose transporter subunit IID compare
OKFHMN_15590 rph -2.1 -3.8 ribonuclease PH compare
OKFHMN_21400 lepA -2.1 -3.0 translation elongation factor 4 compare
OKFHMN_27195 aroD -2.0 -2.1 3-dehydroquinate dehydratase compare
OKFHMN_19130 espL2 -2.0 -1.8 Type III secretion system secreted effector EspL2, cysteine protease compare
OKFHMN_03395 ydaS -2.0 -1.4 transcriptional regulator compare
OKFHMN_10415 panD -2.0 -4.8 aspartate 1-decarboxylase compare
OKFHMN_02665 trpCF -2.0 -3.4 bifunctional indole-3-glycerol-phosphate synthase TrpC/phosphoribosylanthranilate isomerase TrpF compare
OKFHMN_17110 aroK -2.0 -2.5 shikimate kinase AroK compare
OKFHMN_03590 plsX -1.9 -3.0 phosphate acyltransferase PlsX compare
OKFHMN_08320 -1.9 -4.0 Lon protease compare
OKFHMN_19795 sctT -1.9 -0.9 type III secretion system export apparatus subunit SctT compare
OKFHMN_13390 thiS -1.9 -2.1 sulfur carrier protein ThiS compare
OKFHMN_14445 cyaA -1.9 -4.7 class I adenylate cyclase compare
OKFHMN_02660 trpD -1.9 -2.7 bifunctional anthranilate synthase glutamate amidotransferase component TrpG/anthranilate phosphoribosyltransferase TrpD compare
OKFHMN_14255 fre -1.9 -4.4 NAD(P)H-flavin reductase compare
OKFHMN_06935 sdhB -1.8 -2.3 succinate dehydrogenase iron-sulfur subunit SdhB compare
OKFHMN_04380 -1.8 -1.4 DUF3987 domain-containing protein compare
OKFHMN_25960 -1.8 -3.6 hypothetical protein compare
OKFHMN_21370 nadB -1.8 -10.3 L-aspartate oxidase compare
OKFHMN_22895 nuoM -1.8 -3.1 NADH-quinone oxidoreductase subunit M compare
OKFHMN_12825 ytcB -1.8 -1.0 Protein YtcB compare
OKFHMN_28425 dauA -1.7 -1.9 C4-dicarboxylic acid transporter DauA compare
OKFHMN_09395 araC -1.7 -2.3 AraC family transcriptional regulator compare
OKFHMN_09855 -1.7 -2.6 hypothetical protein compare
OKFHMN_27815 -1.7 -2.8 DNA-binding protein compare
OKFHMN_22885 nuoK -1.7 -1.1 NADH-quinone oxidoreductase subunit NuoK compare
OKFHMN_22710 cvpA -1.6 -2.7 colicin V production protein compare
OKFHMN_24075 -1.6 -3.1 bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase compare
OKFHMN_20035 ppdC -1.6 -1.9 prepilin-type N-terminal cleavage/methylation domain-containing protein compare
OKFHMN_14420 xerC -1.6 -1.2 tyrosine recombinase XerC compare
OKFHMN_27215 ydiL -1.6 -1.1 Uncharacterized protein YdiL compare
OKFHMN_22830 lrhA -1.6 -6.3 transcriptional regulator LrhA compare
OKFHMN_00405 repA2 -1.6 -5.1 Replication regulatory protein repA2 compare
OKFHMN_16725 -1.6 -1.7 DUF1778 domain-containing protein compare
OKFHMN_05335 elfA -1.6 -1.6 Fimbrial subunit ElfA compare
OKFHMN_27455 sodC -1.6 -1.7 superoxide dismutase [Cu-Zn] SodC compare
OKFHMN_26975 chbR -1.5 -0.9 transcriptional regulator ChbR compare
OKFHMN_13705 -1.5 -2.4 hypothetical protein compare
OKFHMN_22565 sixA -1.5 -0.9 phosphohistidine phosphatase SixA compare
OKFHMN_10400 panB -1.5 -6.3 3-methyl-2-oxobutanoate hydroxymethyltransferase compare
OKFHMN_26860 ynjE -1.5 -2.4 thiosulfate sulfurtransferase YnjE compare
OKFHMN_27820 dnaQ -1.5 -0.9 exonuclease compare
OKFHMN_13395 thiG -1.5 -1.9 thiazole synthase compare
OKFHMN_06805 tolB -1.5 -3.5 Tol-Pal system protein TolB compare
OKFHMN_17565 aroE -1.5 -5.0 shikimate dehydrogenase compare
OKFHMN_25965 -1.5 -1.1 Phage protein compare
OKFHMN_17000 bioH -1.5 -5.1 pimeloyl-ACP methyl ester esterase BioH compare
OKFHMN_16735 panM -1.5 -1.5 aspartate 1-decarboxylase autocleavage activator PanM compare
OKFHMN_13375 thiC -1.4 -7.5 phosphomethylpyrimidine synthase ThiC compare
OKFHMN_04450 -1.4 -1.2 acyl carrier protein compare
OKFHMN_10845 apaH -1.4 -2.8 bis(5'-nucleosyl)-tetraphosphatase (symmetrical) ApaH compare
OKFHMN_04430 -1.4 -1.2 ATP-binding protein compare
OKFHMN_03925 -1.4 -2.0 restriction endonuclease compare
OKFHMN_25305 -1.4 -0.7 hypothetical protein compare
OKFHMN_02350 ycjR -1.3 -1.1 3-dehydro-D-guloside 4-epimerase compare
OKFHMN_22850 nuoC -1.3 -2.7 NADH-quinone oxidoreductase subunit C/D compare
OKFHMN_06815 tolR -1.3 -2.9 colicin uptake protein TolR compare
OKFHMN_06395 bioF -1.3 -3.7 8-amino-7-oxononanoate synthase compare
OKFHMN_06475 -1.3 -0.8 phage tail protein compare
OKFHMN_06490 -1.3 -1.3 phage minor tail protein G compare
OKFHMN_19540 yqfB -1.3 -2.0 N(4)-acetylcytidine aminohydrolase compare
OKFHMN_14170 dsbA -1.3 -1.3 thiol:disulfide interchange protein DsbA compare
OKFHMN_28650 oppF -1.3 -0.8 murein tripeptide/oligopeptide ABC transporter ATP-binding protein OppF compare
OKFHMN_18800 ygiB -1.3 -1.7 DUF1190 domain-containing protein compare
OKFHMN_14890 pstA -1.3 -0.8 phosphate ABC transporter permease PstA compare
OKFHMN_05240 matP -1.3 -0.7 macrodomain Ter protein MatP compare
OKFHMN_06810 tolA -1.2 -2.4 cell envelope integrity protein TolA compare
OKFHMN_07745 tnp-ISAs1 -1.2 -0.8 ISAs1 family transposase compare
OKFHMN_10825 surA -1.2 -4.1 peptidylprolyl isomerase SurA compare
OKFHMN_12430 aspA -1.2 -4.9 aspartate ammonia-lyase compare
OKFHMN_05075 -1.2 -2.1 DUF1627 domain-containing protein compare
OKFHMN_28525 narX -1.2 -1.1 nitrate/nitrite two-component system sensor histidine kinase NarX compare
OKFHMN_19275 gshB -1.2 -2.4 glutathione synthase compare
OKFHMN_08380 cyoE -1.2 -4.9 heme o synthase compare
OKFHMN_16940 glpR -1.2 -2.5 DeoR/GlpR family transcriptional regulator compare
OKFHMN_04200 -1.1 -1.0 IS66 family transposase compare
OKFHMN_18340 agaR -1.1 -3.0 aga operon transcriptional regulator AgaR compare
OKFHMN_05485 aroA -1.1 -4.7 3-phosphoshikimate 1-carboxyvinyltransferase compare
OKFHMN_00905 -1.1 -1.1 phage tail protein compare
OKFHMN_20255 mazE -1.1 -1.7 type II toxin-antitoxin system antitoxin MazE compare
OKFHMN_13385 thiF -1.1 -4.6 thiazole biosynthesis adenylyltransferase ThiF compare
OKFHMN_14885 pstC -1.1 -2.0 phosphate ABC transporter permease PstC compare
OKFHMN_24170 yegP -1.1 -1.9 UPF0339 protein YegP compare
OKFHMN_24230 ibsA -1.1 -0.9 Small toxic protein IbsA compare
OKFHMN_16990 -1.1 -2.9 NfuA family Fe-S biogenesis protein compare
OKFHMN_15285 escL -1.1 -1.3 negative regulator EscL, stator protein compare
OKFHMN_14670 maoP -1.1 -3.9 macrodomain Ori organization protein MaoP compare
OKFHMN_10510 pdhR -1.1 -3.8 pyruvate dehydrogenase complex transcriptional repressor PdhR compare
OKFHMN_21740 bamB -1.1 -2.0 outer membrane protein assembly factor BamB compare
OKFHMN_19250 yggT -1.1 -1.5 osmotic shock tolerance protein YggT compare
OKFHMN_19505 pepP -1.1 -3.3 Xaa-Pro aminopeptidase compare
OKFHMN_28365 fepC -1.1 -1.6 ABC transporter ATP-binding protein compare
OKFHMN_19905 yqeH -1.1 -1.1 Uncharacterized protein YqeH compare
OKFHMN_14980 -1.1 -1.2 hypothetical protein compare
OKFHMN_27645 fumB -1.1 -1.2 class I fumarate hydratase compare
OKFHMN_27280 ldtE -1.0 -1.3 L,D-transpeptidase LdtE compare
OKFHMN_01795 ldhA -1.0 -1.1 D-lactate dehydrogenase compare
OKFHMN_28260 umuD -1.0 -0.8 Protein UmuD compare
OKFHMN_04050 -1.0 -0.7 DNA-binding protein compare
OKFHMN_27155 ydiT -1.0 -1.5 Ferredoxin-like protein YdiT compare
OKFHMN_01575 potD -1.0 -1.1 spermidine/putrescine ABC transporter substrate-binding protein compare
OKFHMN_05875 -1.0 -0.7 hypothetical protein compare
OKFHMN_28575 ychJ -1.0 -1.2 YchJ family protein compare
OKFHMN_14395 corA -1.0 -1.0 magnesium/cobalt transporter CorA compare
OKFHMN_23440 fruB -1.0 -2.6 fused PTS fructose transporter subunit IIA/HPr protein compare
OKFHMN_15905 hycB -1.0 -1.4 electron transporter compare
OKFHMN_22455 dsdX -1.0 -1.2 D-serine transporter DsdX compare
OKFHMN_18145 nlpI -1.0 -4.8 lipoprotein NlpI compare
OKFHMN_08395 panE -1.0 -3.9 2-dehydropantoate 2-reductase compare
OKFHMN_25190 rfaF -1.0 -1.9 ADP-heptose:LPS heptosyltransferase compare
OKFHMN_19525 gcvH -1.0 -1.5 glycine cleavage system protein GcvH compare
OKFHMN_20760 gshA -1.0 -2.8 glutamate--cysteine ligase compare
OKFHMN_26855 ynjF -1.0 -0.9 Inner membrane protein YnjF compare
OKFHMN_10360 folK -1.0 -1.7 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine diphosphokinase compare
OKFHMN_18615 ebgR -1.0 -4.2 transcriptional regulator EbgR compare
OKFHMN_10355 pcnB -1.0 -2.4 polynucleotide adenylyltransferase PcnB compare
OKFHMN_24820 iraM -1.0 -1.2 Anti-adapter protein IraM compare
OKFHMN_09370 -1.0 -1.6 Phage-associated protein compare
OKFHMN_18500 mzrA -1.0 -3.1 EnvZ/OmpR regulon moderator MzrA compare
OKFHMN_12255 hfq -1.0 -2.1 RNA chaperone Hfq compare
OKFHMN_09295 -1.0 -1.4 hypothetical protein compare
OKFHMN_03365 -1.0 -1.5 DUF4406 domain-containing protein compare
OKFHMN_13830 pfkA -1.0 -1.6 6-phosphofructokinase compare


Specific Phenotypes

For 1 genes in this experiment

For carbon source Casamino-acids in Escherichia coli ECRC100

For carbon source Casamino-acids across organisms