Experiment set2S712 for Escherichia coli ECOR38
Casamino-acids
Group: carbon sourceMedia: M9_plus_Casamino-acids + Casamino-acids (5 mg/mL)
Culturing: Ecoli_ECOR38_ML2, 48 well microplate, Aerobic, at 37 (C), shaken=double orbital, continuous, 205cpm
By: Lucas on 12/6/24
Specific Phenotypes
For 2 genes in this experiment
For carbon source Casamino-acids in Escherichia coli ECOR38
For carbon source Casamino-acids across organisms
SEED Subsystems
| Subsystem | #Specific |
|---|---|
| De Novo Purine Biosynthesis | 1 |
| NAD and NADP cofactor biosynthesis global | 1 |
| NAD regulation | 1 |
Metabolic Maps
Color code by fitness: see overview map or list of maps.
Maps containing gene(s) with specific phenotypes:
- Purine metabolism
- Alanine and aspartate metabolism
- One carbon pool by folate
- Nicotinate and nicotinamide metabolism
- Biosynthesis of alkaloids derived from ornithine, lysine and nicotinic acid
MetaCyc Pathways
Pathways that contain genes with specific phenotypes:
| Pathway | #Steps | #Present | #Specific |
|---|---|---|---|
| tetrahydrofolate salvage from 5,10-methenyltetrahydrofolate | 2 | 2 | 1 |
| 5-aminoimidazole ribonucleotide biosynthesis I | 5 | 5 | 1 |
| superpathway of 5-aminoimidazole ribonucleotide biosynthesis | 6 | 6 | 1 |
| NAD de novo biosynthesis I | 6 | 5 | 1 |
| NAD de novo biosynthesis IV (anaerobic) | 6 | 5 | 1 |
| nicotine biosynthesis | 9 | 3 | 1 |
| superpathway of tetrahydrofolate biosynthesis and salvage | 12 | 11 | 1 |
| superpathway of nicotine biosynthesis | 12 | 4 | 1 |
| superpathway of purine nucleotides de novo biosynthesis I | 21 | 21 | 1 |
| aspartate superpathway | 25 | 24 | 1 |