Experiment set2S711 for Escherichia coli ECOR38

Compare to:

L-Arabinose

200 most important genes:

  gene name fitness t score description  
HEPCGN_08710 leuD -8.5 -3.6 3-isopropylmalate dehydratase small subunit compare
HEPCGN_16385 aroE -7.1 -4.9 shikimate dehydrogenase compare
HEPCGN_03210 hisB -6.6 -10.5 bifunctional histidinol-phosphatase/imidazoleglycerol-phosphate dehydratase HisB compare
HEPCGN_01310 odhB -6.5 -4.5 2-oxoglutarate dehydrogenase complex dihydrolipoyllysine-residue succinyltransferase compare
HEPCGN_23030 serC -6.3 -9.3 3-phosphoserine/phosphohydroxythreonine transaminase compare
HEPCGN_03195 hisF -6.2 -10.2 Imidazole glycerol phosphate synthase subunit HisF compare
HEPCGN_01460 tolA -5.9 -8.9 cell envelope integrity protein TolA compare
HEPCGN_01465 tolB -5.9 -5.7 Tol-Pal system protein TolB compare
HEPCGN_16680 zapG -5.8 -2.8 Z-ring associated protein ZapG compare
HEPCGN_18760 serA -5.8 -12.9 phosphoglycerate dehydrogenase compare
HEPCGN_12310 metF -5.5 -9.1 methylenetetrahydrofolate reductase compare
HEPCGN_21820 aroC -5.4 -3.8 chorismate synthase compare
HEPCGN_10460 purA -5.3 -10.6 adenylosuccinate synthase compare
HEPCGN_25600 cysB -5.3 -3.6 HTH-type transcriptional regulator CysB compare
HEPCGN_08815 surA -5.3 -8.2 peptidylprolyl isomerase SurA compare
HEPCGN_02315 -5.2 -1.3 MarR family transcriptional regulator compare
HEPCGN_20655 glyA -5.2 -3.6 serine hydroxymethyltransferase compare
HEPCGN_21100 purC -5.0 -9.9 phosphoribosylaminoimidazolesuccinocarboxamide synthase compare
HEPCGN_03215 hisC -5.0 -6.8 histidinol-phosphate transaminase compare
HEPCGN_23035 aroA -5.0 -14.1 3-phosphoshikimate 1-carboxyvinyltransferase compare
HEPCGN_13340 ilvY -5.0 -9.3 HTH-type transcriptional activator IlvY compare
HEPCGN_06475 purE -4.8 -3.7 N5-carboxyaminoimidazole ribonucleotide mutase compare
HEPCGN_01305 sucA -4.8 -9.7 2-oxoglutarate dehydrogenase E1 component compare
HEPCGN_13350 ilvD -4.8 -10.5 dihydroxy-acid dehydratase compare
HEPCGN_08705 leuC1 -4.6 -8.4 3-isopropylmalate dehydratase large subunit 1 compare
HEPCGN_12220 argH -4.5 -9.0 argininosuccinate lyase compare
HEPCGN_20525 rseA -4.5 -4.4 anti-sigma-E factor RseA compare
HEPCGN_08295 dksA -4.5 -5.8 RNA polymerase-binding protein DksA compare
HEPCGN_11950 purH -4.5 -8.4 bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase compare
HEPCGN_08780 araD -4.4 -7.2 L-ribulose-5-phosphate 4-epimerase conserved
HEPCGN_01470 pal -4.4 -3.6 peptidoglycan-associated lipoprotein Pal compare
HEPCGN_09200 serB -4.4 -7.2 phosphoserine phosphatase compare
HEPCGN_13335 ilvC -4.4 -12.6 ketol-acid reductoisomerase compare
HEPCGN_20905 guaA -4.3 -6.3 glutamine-hydrolyzing GMP synthase compare
HEPCGN_12345 metB -4.3 -9.3 cystathionine gamma-synthase compare
HEPCGN_03200 hisA -4.2 -3.8 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)me thylideneamino]imidazole-4-carboxamide isomerase compare
HEPCGN_08695 -4.2 -9.9 2-isopropylmalate synthase compare
HEPCGN_20975 purM -4.1 -8.7 Phosphoribosylformylglycinamidine cyclo-ligase compare
HEPCGN_08700 leuB -4.1 -5.8 3-isopropylmalate dehydrogenase compare
HEPCGN_04695 ruvB -4.0 -3.0 Holliday junction branch migration DNA helicase RuvB compare
HEPCGN_25515 trpA -4.0 -7.8 tryptophan synthase subunit alpha compare
HEPCGN_15950 rpe -3.9 -3.3 ribulose-phosphate 3-epimerase compare
HEPCGN_16670 degS -3.9 -2.7 outer membrane-stress sensor serine endopeptidase DegS compare
HEPCGN_20900 guaB -3.9 -5.6 IMP dehydrogenase compare
HEPCGN_07250 proC -3.9 -7.1 pyrroline-5-carboxylate reductase compare
HEPCGN_01455 tolR -3.8 -4.9 colicin uptake protein TolR compare
HEPCGN_01450 tolQ -3.7 -5.6 Tol-Pal system protein TolQ compare
HEPCGN_10025 argF -3.7 -7.0 ornithine carbamoyltransferase compare
HEPCGN_19565 lysA -3.7 -12.4 diaminopimelate decarboxylase compare
HEPCGN_15935 aroB -3.7 -5.9 3-dehydroquinate synthase compare
HEPCGN_03220 hisD -3.6 -5.6 Histidinol dehydrogenase compare
HEPCGN_16965 argG -3.6 -6.6 argininosuccinate synthase compare
HEPCGN_13290 wecA -3.6 -8.3 UDP-N-acetylglucosamine--undecaprenyl-phosphate N-acetylglucosaminephosphotransferase compare
HEPCGN_19255 rppH -3.5 -3.5 RNA pyrophosphohydrolase compare
HEPCGN_03205 hisH -3.5 -4.0 imidazole glycerol phosphate synthase subunit HisH compare
HEPCGN_20340 tyrA -3.5 -9.6 bifunctional chorismate mutase/prephenate dehydrogenase compare
HEPCGN_13355 ilvE -3.5 -7.1 branched-chain-amino-acid transaminase compare
HEPCGN_17825 metC -3.4 -8.3 cystathionine beta-lyase compare
HEPCGN_11955 purD -3.4 -6.9 Phosphoribosylamine--glycine ligase compare
HEPCGN_07775 proA -3.3 -7.9 glutamate-5-semialdehyde dehydrogenase compare
HEPCGN_12235 argE -3.3 -8.4 acetylornithine deacetylase compare
HEPCGN_21910 purF -3.2 -11.4 amidophosphoribosyltransferase compare
HEPCGN_21365 crr -3.2 -2.4 PTS glucose transporter subunit IIA compare
HEPCGN_20615 purL -3.2 -14.9 phosphoribosylformylglycinamidine synthase compare
HEPCGN_08925 carB -3.2 -11.1 carbamoyl-phosphate synthase large subunit compare
HEPCGN_00885 lipB -3.2 -3.3 lipoyl(octanoyl) transferase LipB compare
HEPCGN_08475 aceF -3.2 -2.1 pyruvate dehydrogenase complex dihydrolipoyllysine-residue acetyltransferase compare
HEPCGN_19305 recB -3.1 -6.9 exodeoxyribonuclease V subunit beta compare
HEPCGN_08930 carA -3.1 -5.6 carbamoyl phosphate synthase small subunit compare
HEPCGN_13025 metE -3.0 -12.1 5-methyltetrahydropteroyltriglutamate--homocystei ne S-methyltransferase compare
HEPCGN_05580 aroD -3.0 -2.5 3-dehydroquinate dehydratase compare
HEPCGN_10230 cysQ -3.0 -8.7 3'(2'),5'-bisphosphate nucleotidase CysQ compare
HEPCGN_12240 ppc -3.0 -13.3 phosphoenolpyruvate carboxylase compare
HEPCGN_05675 pykF -3.0 -2.1 pyruvate kinase PykF compare
HEPCGN_03225 hisG -2.9 -6.5 ATP phosphoribosyltransferase compare
HEPCGN_15930 aroK -2.9 -1.4 shikimate kinase AroK compare
HEPCGN_25520 trpB -2.9 -7.2 tryptophan synthase subunit beta compare
HEPCGN_11915 metA -2.9 -4.9 homoserine O-succinyltransferase compare
HEPCGN_09105 thrC -2.8 -8.8 threonine synthase compare
HEPCGN_12225 -2.8 -5.1 acetylglutamate kinase compare
HEPCGN_13030 metR -2.7 -9.0 HTH-type transcriptional regulator MetR compare
HEPCGN_04675 ruvC -2.7 -2.7 crossover junction endodeoxyribonuclease RuvC compare
HEPCGN_18630 tkt -2.7 -4.6 transketolase compare
HEPCGN_25530 trpD -2.6 -7.1 bifunctional anthranilate synthase glutamate amidotransferase component TrpG/anthranilate phosphoribosyltransferase TrpD compare
HEPCGN_19085 cysH -2.6 -5.8 phosphoadenosine phosphosulfate reductase compare
HEPCGN_00190 -2.6 -0.6 DUF2726 domain-containing protein compare
HEPCGN_12230 argC -2.6 -10.2 N-acetyl-gamma-glutamyl-phosphate reductase compare
HEPCGN_08820 pdxA -2.6 -6.0 4-hydroxythreonine-4-phosphate dehydrogenase PdxA compare
HEPCGN_21370 ptsI -2.5 -5.8 phosphoenolpyruvate-protein phosphotransferase PtsI compare
HEPCGN_14530 -2.5 -2.0 O-antigen ligase domain-containing protein compare
HEPCGN_25535 trpE -2.5 -6.7 anthranilate synthase component I compare
HEPCGN_19295 recC -2.5 -6.4 exodeoxyribonuclease V subunit gamma compare
HEPCGN_19630 cysC -2.4 -7.7 Adenylyl-sulfate kinase compare
HEPCGN_20345 pheA -2.4 -7.3 bifunctional chorismate mutase/prephenate dehydratase compare
HEPCGN_23760 pyrC -2.4 -7.2 dihydroorotase compare
HEPCGN_08835 apaH -2.4 -6.2 bis(5'-nucleosyl)-tetraphosphatase (symmetrical) ApaH compare
HEPCGN_27375 repA -2.4 -1.8 incFII family plasmid replication initiator RepA compare
HEPCGN_06935 lon_P403L -2.4 -6.0 Lon protease compare
HEPCGN_19315 argA -2.4 -3.9 amino-acid N-acetyltransferase compare
HEPCGN_03670 -2.4 -2.1 Putative bacterial toxin ydaT compare
HEPCGN_01275 gltA -2.3 -6.3 citrate synthase compare
HEPCGN_14540 rfaF -2.3 -1.9 ADP-heptose--LPS heptosyltransferase RfaF compare
HEPCGN_03695 -2.2 -2.0 Uncharacterized protein YmfE compare
HEPCGN_07780 proB -2.2 -4.0 Glutamate 5-kinase compare
HEPCGN_27400 -2.2 -0.9 transcriptional regulator compare
HEPCGN_03190 hisIE -2.1 -3.0 bifunctional phosphoribosyl-AMP cyclohydrolase/phosphoribosyl-ATP diphosphatase HisIE compare
HEPCGN_19570 lysR -2.1 -6.7 DNA-binding transcriptional regulator LysR compare
HEPCGN_06480 purK -2.1 -6.5 5-(carboxyamino)imidazole ribonucleotide synthase compare
HEPCGN_19090 cysI -2.1 -6.0 assimilatory sulfite reductase (NADPH) hemoprotein subunit compare
HEPCGN_20125 -2.0 -1.2 hypothetical protein compare
HEPCGN_19620 cysD -2.0 -8.1 sulfate adenylyltransferase subunit CysD compare
HEPCGN_19095 cysJ -2.0 -7.8 NADPH-dependent assimilatory sulfite reductase flavoprotein subunit compare
HEPCGN_08775 araA -2.0 -6.7 L-arabinose isomerase conserved
HEPCGN_25325 -2.0 -1.7 SAR-endolysin compare
HEPCGN_14420 pyrE -2.0 -6.4 Orotate phosphoribosyltransferase compare
HEPCGN_11080 cbtA -1.9 -1.4 type IV toxin-antitoxin system toxin CbtA compare
HEPCGN_25525 trpCF -1.9 -5.8 bifunctional indole-3-glycerol-phosphate synthase TrpC/phosphoribosylanthranilate isomerase TrpF compare
HEPCGN_25650 pyrF -1.9 -5.6 orotidine-5'-phosphate decarboxylase compare
HEPCGN_21865 pdxB -1.9 -7.5 4-phosphoerythronate dehydrogenase PdxB compare
HEPCGN_09110 thrB -1.9 -4.6 homoserine kinase compare
HEPCGN_12475 pfkA -1.9 -4.4 6-phosphofructokinase compare
HEPCGN_12025 thiF -1.9 -3.9 thiazole biosynthesis adenylyltransferase ThiF compare
HEPCGN_08480 aceE -1.8 -5.2 pyruvate dehydrogenase (acetyl-transferring), homodimeric type compare
HEPCGN_25055 hns -1.8 -1.1 DNA-binding transcriptional regulator H-NS compare
HEPCGN_13680 -1.8 -2.9 tRNA modification GTPase MnmE compare
HEPCGN_19625 cysN -1.8 -8.2 sulfate adenylyltransferase subunit CysN compare
HEPCGN_13345 ilvA -1.8 -7.6 threonine ammonia-lyase, biosynthetic compare
HEPCGN_20570 pdxJ -1.8 -3.1 pyridoxine 5'-phosphate synthase compare
HEPCGN_21380 cysK -1.8 -7.3 cysteine synthase A compare
HEPCGN_12115 Thr_trna -1.8 -1.3 tRNA-Thr(ggt) compare
HEPCGN_13500 mnmG -1.7 -4.3 tRNA uridine-5-carboxymethylaminomethyl(34) synthesis enzyme MnmG compare
HEPCGN_03705 -1.7 -0.9 protein hokC compare
HEPCGN_00270 -1.7 -1.9 LuxR family transcriptional regulator compare
HEPCGN_21875 truA -1.7 -3.4 aspartate-semialdehyde dehydrogenase compare
HEPCGN_09115 thrA -1.6 -8.7 bifunctional aspartate kinase/homoserine dehydrogenase I compare
HEPCGN_08770 araB -1.6 -6.6 ribulokinase conserved
HEPCGN_19900 recA -1.6 -3.0 recombinase RecA compare
HEPCGN_24800 ldcA -1.6 -1.7 muramoyltetrapeptide carboxypeptidase compare
HEPCGN_13880 ivbL -1.6 -2.4 ilvB operon leader peptide IvbL compare
HEPCGN_10060 pyrB -1.6 -5.8 aspartate carbamoyltransferase compare
HEPCGN_08765 araC -1.6 -6.0 arabinose operon transcriptional regulator AraC conserved
HEPCGN_16010 cysG -1.5 -6.1 siroheme synthase CysG compare
HEPCGN_02985 -1.5 -0.9 transcriptional regulator compare
HEPCGN_23225 pyrD -1.5 -4.8 quinone-dependent dihydroorotate dehydrogenase compare
HEPCGN_13320 rep -1.5 -2.7 DNA helicase Rep compare
HEPCGN_22940 ftsK -1.5 -3.1 DNA translocase FtsK compare
HEPCGN_20770 iscA -1.5 -1.9 iron-sulfur cluster assembly protein IscA compare
HEPCGN_01515 nadA -1.5 -5.7 quinolinate synthase NadA compare
HEPCGN_13550 atpC -1.5 -2.5 F0F1 ATP synthase subunit epsilon compare
HEPCGN_03635 -1.5 -1.2 DUF1482 domain-containing protein compare
HEPCGN_25795 pspB -1.4 -0.9 envelope stress response membrane protein PspB compare
HEPCGN_02135 -1.4 -1.0 hypothetical protein compare
HEPCGN_02760 -1.4 -3.9 bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase compare
HEPCGN_01120 seqA -1.4 -1.4 replication initiation negative regulator SeqA compare
HEPCGN_08550 yacG -1.3 -0.7 DNA gyrase inhibitor YacG compare
HEPCGN_15520 yhhL -1.3 -2.8 DUF1145 domain-containing protein compare
HEPCGN_06395 -1.3 -0.9 Lambda prophage-derived head-to-tail joining protein W compare
HEPCGN_02400 -1.3 -1.7 hypothetical protein compare
HEPCGN_13595 pstC -1.3 -2.4 phosphate ABC transporter permease PstC compare
HEPCGN_25330 -1.3 -1.8 Putative endopeptidase compare
HEPCGN_21670 ipuB -1.3 -1.2 tyrosine-type DNA invertase IpuB compare
HEPCGN_03185 wzzB -1.3 -2.0 LPS O-antigen chain length determinant protein WzzB compare
HEPCGN_04405 -1.3 -0.9 DUF4754 domain-containing protein compare
HEPCGN_02305 -1.3 -1.2 hypothetical protein compare
HEPCGN_01770 ybiB -1.3 -5.5 DNA-binding protein YbiB compare
HEPCGN_21340 cysA -1.3 -4.8 sulfate/thiosulfate ABC transporter ATP-binding protein CysA compare
HEPCGN_05265 xthA -1.3 -3.2 exodeoxyribonuclease III compare
HEPCGN_21330 cysT -1.3 -4.0 sulfate/thiosulfate ABC transporter permease CysT compare
HEPCGN_08690 leuL -1.3 -1.7 leu operon leader peptide compare
HEPCGN_06945 clpX -1.2 -4.2 ATP-dependent protease ATP-binding subunit ClpX compare
HEPCGN_22000 ackA -1.2 -1.8 acetate kinase compare
HEPCGN_17695 cpdA -1.2 -4.3 3',5'-cyclic-AMP phosphodiesterase compare
HEPCGN_20965 ppk1 -1.2 -6.4 polyphosphate kinase 1 compare
HEPCGN_04350 mraW -1.2 -2.1 DNA methyltransferase compare
HEPCGN_11980 hupA -1.2 -1.5 DNA-binding protein HU-alpha compare
HEPCGN_26700 tfaE -1.2 -2.6 Prophage tail fiber assembly -like protein TfaE compare
HEPCGN_21325 cysP -1.2 -4.0 thiosulfate/sulfate ABC transporter substrate-binding protein CysP compare
HEPCGN_22935 lrp -1.2 -2.5 leucine-responsive transcriptional regulator Lrp compare
HEPCGN_04685 yobI -1.2 -0.8 Uncharacterized protein YobI compare
HEPCGN_02310 -1.2 -1.5 DUF4752 domain-containing protein compare
HEPCGN_08510 nadC -1.2 -4.4 carboxylating nicotinate-nucleotide diphosphorylase compare
HEPCGN_00170 -1.1 -3.3 peptidyl-arginine deiminase compare
HEPCGN_12020 thiF -1.1 -5.2 thiazole biosynthesis adenylyltransferase ThiF compare
HEPCGN_02295 -1.1 -1.6 Ead/Ea22-like protein compare
HEPCGN_17075 yhbO -1.1 -1.8 protein/nucleic acid deglycase compare
HEPCGN_05670 lpp -1.1 -0.9 murein lipoprotein Lpp compare
HEPCGN_00230 -1.1 -1.2 hypothetical protein compare
HEPCGN_04860 proQ -1.1 -2.2 RNA chaperone ProQ compare
HEPCGN_12340 metL -1.1 -5.2 bifunctional aspartate kinase/homoserine dehydrogenase II compare
HEPCGN_12030 thiG -1.1 -2.3 thiazole synthase compare
HEPCGN_19500 relA -1.0 -5.1 GTP diphosphokinase compare
HEPCGN_03305 yeeX -1.0 -2.7 DUF496 domain-containing protein compare
HEPCGN_17020 nlpI -1.0 -5.4 lipoprotein NlpI compare
HEPCGN_02010 ybjH -1.0 -0.8 Uncharacterized protein YbjH compare
HEPCGN_20455 trxC -1.0 -2.0 thioredoxin TrxC compare
HEPCGN_12015 thiE -1.0 -3.9 thiamine phosphate synthase compare
HEPCGN_13125 xerC -1.0 -1.8 tyrosine recombinase XerC compare
HEPCGN_05155 rbsK -1.0 -2.2 sugar kinase compare
HEPCGN_03675 -1.0 -1.6 Ybl78 compare
HEPCGN_02625 -1.0 -1.7 damage-inducible protein DinI compare


Specific Phenotypes

For 4 genes in this experiment

For carbon source L-Arabinose in Escherichia coli ECOR38

For carbon source L-Arabinose across organisms