Experiment set2S710 for Escherichia coli ECOR27

L-Rhamnose

Group: carbon source
Media: M9_plus_L-Rhamnose + L-Rhamnose (20 mM)
Culturing: Ecoli_ECOR27_ML1, 48 well microplate, Aerobic, at 37 (C), shaken=double orbital, continuous, 205cpm
By: Lucas on 12/6/2024

Specific Phenotypes

For 17 genes in this experiment

For carbon source L-Rhamnose in Escherichia coli ECOR27

For carbon source L-Rhamnose across organisms

SEED Subsystems

Subsystem	#Specific
L-rhamnose utilization	7
Glycerol and Glycerol-3-phosphate Uptake and Utilization	1
L-ascorbate utilization (and related gene clusters)	1
Lactate utilization	1
Respiratory dehydrogenases 1	1
Transport of Manganese	1

Metabolic Maps

Color code by fitness: see overview map or list of maps.

Maps containing gene(s) with specific phenotypes:

• Fructose and mannose metabolism
• Pentose and glucuronate interconversions
• Pyruvate metabolism

MetaCyc Pathways

Pathways that contain genes with specific phenotypes:

Pathway	#Steps	#Present	#Specific
L-rhamnose degradation I	5	5	3
L-lactaldehyde degradation (aerobic)	2	2	1
superpathway of fucose and rhamnose degradation	12	12	4
methylglyoxal degradation V	3	3	1
methylglyoxal degradation IV	3	3	1
L-lyxose degradation	4	4	1
superpathway of methylglyoxal degradation	8	7	1
lactate fermentation to acetate, CO2 and hydrogen (Desulfovibrionales)	8	5	1
superpathway of pentose and pentitol degradation	42	16	1