Experiment set2S707 for Escherichia coli ECRC100

Compare to:

Sodium-DL-Lactate

200 most important genes:

  gene name fitness t score description  
OKFHMN_10730 leuD -8.8 -5.7 3-isopropylmalate dehydratase small subunit compare
OKFHMN_22615 aroC -8.2 -5.7 chorismate synthase compare
OKFHMN_19460 serA -7.5 -11.5 phosphoglycerate dehydrogenase compare
OKFHMN_10345 dksA -7.3 -10.0 RNA polymerase-binding protein DksA compare
OKFHMN_05490 serC -7.1 -8.5 3-phosphoserine/phosphohydroxythreonine transaminase compare
OKFHMN_23440 fruB -6.8 -4.7 fused PTS fructose transporter subunit IIA/HPr protein compare
OKFHMN_27145 ppsA -6.8 -8.2 phosphoenolpyruvate synthase compare
OKFHMN_02550 pyrF -6.8 -3.6 orotidine-5'-phosphate decarboxylase compare
OKFHMN_05295 pyrD -6.6 -4.0 quinone-dependent dihydroorotate dehydrogenase compare
OKFHMN_17115 aroB -6.3 -12.6 3-dehydroquinate synthase compare
OKFHMN_08610 proC -5.9 -4.1 pyrroline-5-carboxylate reductase compare
OKFHMN_21760 guaB -5.9 -4.1 IMP dehydrogenase compare
OKFHMN_08485 parD -5.9 -2.7 Antitoxin ParD compare
OKFHMN_10945 carA -5.8 -11.4 carbamoyl phosphate synthase small subunit compare
OKFHMN_17565 aroE -5.8 -11.3 shikimate dehydrogenase compare
OKFHMN_02670 trpB -5.7 -5.4 tryptophan synthase subunit beta compare
OKFHMN_13310 purH -5.4 -14.4 bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase compare
OKFHMN_11945 fbp -5.3 -9.6 class 1 fructose-bisphosphatase compare
OKFHMN_24275 dcd -5.3 -2.4 dCTP deaminase compare
OKFHMN_05485 aroA -5.3 -12.6 3-phosphoshikimate 1-carboxyvinyltransferase compare
OKFHMN_13665 metF -5.3 -10.4 methylenetetrahydrofolate reductase compare
OKFHMN_07835 purE -5.3 -1.9 N5-carboxyaminoimidazole ribonucleotide mutase compare
OKFHMN_21810 purM -5.2 -12.5 Phosphoribosylformylglycinamidine cyclo-ligase compare
OKFHMN_11100 thrC -5.2 -9.9 threonine synthase compare
OKFHMN_02675 trpA -5.2 -4.1 tryptophan synthase subunit alpha compare
OKFHMN_21510 glyA -5.2 -2.4 serine hydroxymethyltransferase compare
OKFHMN_26370 -5.2 -1.4 hypothetical protein compare
OKFHMN_10940 carB -5.2 -12.3 carbamoyl-phosphate synthase large subunit compare
OKFHMN_10685 cra -5.1 -8.7 catabolite repressor/activator compare
OKFHMN_06920 odhB -5.1 -3.1 2-oxoglutarate dehydrogenase complex dihydrolipoyllysine-residue succinyltransferase compare
OKFHMN_14420 xerC -5.1 -2.4 tyrosine recombinase XerC compare
OKFHMN_10725 leuC1 -5.1 -12.2 3-isopropylmalate dehydratase large subunit 1 compare
OKFHMN_10715 -5.1 -11.2 2-isopropylmalate synthase compare
OKFHMN_11865 pyrB -5.1 -6.4 aspartate carbamoyltransferase compare
OKFHMN_21470 purL -5.1 -16.1 phosphoribosylformylglycinamidine synthase compare
OKFHMN_22715 purF -5.0 -9.1 amidophosphoribosyltransferase compare
OKFHMN_13315 purD -5.0 -10.4 Phosphoribosylamine--glycine ligase compare
OKFHMN_10720 leuB -5.0 -8.6 3-isopropylmalate dehydrogenase compare
OKFHMN_24520 hisG -5.0 -4.0 ATP phosphoribosyltransferase compare
OKFHMN_24505 hisB -4.9 -5.3 bifunctional histidinol-phosphatase/imidazoleglycerol-phosphate dehydratase HisB compare
OKFHMN_18090 argG -4.9 -8.2 argininosuccinate synthase compare
OKFHMN_24495 hisA -4.7 -2.3 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)me thylideneamino]imidazole-4-carboxamide isomerase compare
OKFHMN_13575 argH -4.7 -8.4 argininosuccinate lyase compare
OKFHMN_21425 pdxJ -4.7 -3.5 pyridoxine 5'-phosphate synthase compare
OKFHMN_03730 pyrC -4.7 -6.2 dihydroorotase compare
OKFHMN_06960 gltA -4.7 -8.3 citrate synthase compare
OKFHMN_13595 ppc -4.6 -15.9 phosphoenolpyruvate carboxylase compare
OKFHMN_24500 hisH -4.6 -2.7 imidazole glycerol phosphate synthase subunit HisH compare
OKFHMN_21225 pheA -4.6 -5.9 bifunctional chorismate mutase/prephenate dehydratase compare
OKFHMN_14325 metE -4.5 -18.0 5-methyltetrahydropteroyltriglutamate--homocystei ne S-methyltransferase compare
OKFHMN_11200 serB -4.5 -6.0 phosphoserine phosphatase compare
OKFHMN_21220 tyrA -4.4 -13.8 bifunctional chorismate mutase/prephenate dehydrogenase compare
OKFHMN_14625 ilvC -4.4 -17.9 ketol-acid reductoisomerase compare
OKFHMN_14100 glnA -4.3 -4.1 glutamate--ammonia ligase compare
OKFHMN_24515 hisD -4.3 -4.1 Histidinol dehydrogenase compare
OKFHMN_12035 cysQ -4.1 -8.5 3'(2'),5'-bisphosphate nucleotidase CysQ compare
OKFHMN_24485 hisIE -4.1 -3.9 bifunctional phosphoribosyl-AMP cyclohydrolase/phosphoribosyl-ATP diphosphatase HisIE compare
OKFHMN_24510 hisC -4.1 -5.5 histidinol-phosphate transaminase compare
OKFHMN_14640 ilvD -4.0 -17.9 dihydroxy-acid dehydratase compare
OKFHMN_11105 thrB -4.0 -9.7 homoserine kinase compare
OKFHMN_14645 ilvE -4.0 -12.2 branched-chain-amino-acid transaminase compare
OKFHMN_21930 purC -3.7 -3.3 phosphoribosylaminoimidazolesuccinocarboxamide synthase compare
OKFHMN_18960 metC -3.7 -12.0 cystathionine beta-lyase compare
OKFHMN_00135 sopA -3.6 -2.5 plasmid-partitioning protein SopA compare
OKFHMN_09670 proA -3.6 -7.1 glutamate-5-semialdehyde dehydrogenase compare
OKFHMN_09675 proB -3.5 -8.0 Glutamate 5-kinase compare
OKFHMN_20375 cysI -3.5 -12.0 assimilatory sulfite reductase (NADPH) hemoprotein subunit compare
OKFHMN_14635 ilvA -3.4 -11.6 threonine ammonia-lyase, biosynthetic compare
OKFHMN_15600 pyrE -3.4 -2.9 Orotate phosphoribosyltransferase compare
OKFHMN_20450 cysC -3.4 -7.5 Adenylyl-sulfate kinase compare
OKFHMN_14330 metR -3.4 -9.3 HTH-type transcriptional regulator MetR compare
OKFHMN_13675 metB -3.4 -13.6 cystathionine gamma-synthase compare
OKFHMN_22660 pdxB -3.3 -6.0 4-phosphoerythronate dehydrogenase PdxB compare
OKFHMN_17830 sspA -3.2 -2.7 stringent starvation protein A compare
OKFHMN_12230 purA -3.2 -4.3 adenylosuccinate synthase compare
OKFHMN_14835 atpC -3.2 -1.2 F0F1 ATP synthase subunit epsilon compare
OKFHMN_27195 aroD -3.2 -2.6 3-dehydroquinate dehydratase compare
OKFHMN_13275 metA -3.2 -6.4 homoserine O-succinyltransferase compare
OKFHMN_11110 thrA -3.2 -13.9 bifunctional aspartate kinase/homoserine dehydrogenase I compare
OKFHMN_19945 lysA -3.1 -8.3 diaminopimelate decarboxylase compare
OKFHMN_08215 tomB -3.1 -2.0 Hha toxicity modulator TomB compare
OKFHMN_10830 pdxA -3.1 -9.2 4-hydroxythreonine-4-phosphate dehydrogenase PdxA compare
OKFHMN_07840 purK -3.1 -6.2 5-(carboxyamino)imidazole ribonucleotide synthase compare
OKFHMN_25965 -3.0 -1.6 Phage protein compare
OKFHMN_20370 cysJ -2.9 -9.1 NADPH-dependent assimilatory sulfite reductase flavoprotein subunit compare
OKFHMN_19940 lysR -2.9 -8.9 DNA-binding transcriptional regulator LysR compare
OKFHMN_14170 dsbA -2.8 -2.9 thiol:disulfide interchange protein DsbA compare
OKFHMN_22200 cysK -2.7 -6.0 cysteine synthase A compare
OKFHMN_13590 argE -2.7 -12.9 acetylornithine deacetylase compare
OKFHMN_10360 folK -2.7 -2.9 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine diphosphokinase compare
OKFHMN_11835 argF -2.7 -7.7 ornithine carbamoyltransferase compare
OKFHMN_14630 ilvY -2.6 -8.3 HTH-type transcriptional activator IlvY compare
OKFHMN_06810 tolA -2.6 -4.7 cell envelope integrity protein TolA compare
OKFHMN_11115 thrL -2.5 -5.2 thr operon leader peptide compare
OKFHMN_15780 lldP -2.5 -13.4 L-lactate permease compare
OKFHMN_20380 cysH -2.5 -3.2 phosphoadenosine phosphosulfate reductase compare
OKFHMN_13580 -2.5 -11.5 acetylglutamate kinase compare
OKFHMN_12260 miaA -2.4 -3.8 tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA compare
OKFHMN_17110 aroK -2.4 -2.1 shikimate kinase AroK compare
OKFHMN_28425 dauA -2.3 -2.3 C4-dicarboxylic acid transporter DauA compare
OKFHMN_13345 hupA -2.3 -4.2 DNA-binding protein HU-alpha compare
OKFHMN_02665 trpCF -2.3 -4.8 bifunctional indole-3-glycerol-phosphate synthase TrpC/phosphoribosylanthranilate isomerase TrpF compare
OKFHMN_14670 maoP -2.3 -7.9 macrodomain Ori organization protein MaoP compare
OKFHMN_05240 matP -2.2 -1.4 macrodomain Ter protein MatP compare
OKFHMN_02660 trpD -2.2 -2.6 bifunctional anthranilate synthase glutamate amidotransferase component TrpG/anthranilate phosphoribosyltransferase TrpD compare
OKFHMN_10825 surA -2.2 -7.2 peptidylprolyl isomerase SurA compare
OKFHMN_20440 cysD -2.2 -10.1 sulfate adenylyltransferase subunit CysD compare
OKFHMN_20060 argA -2.2 -8.0 amino-acid N-acetyltransferase compare
OKFHMN_02500 acrA -2.2 -1.9 efflux transporter periplasmic adaptor subunit compare
OKFHMN_00130 sopA -2.2 -3.6 plasmid-partitioning protein SopA compare
OKFHMN_06805 tolB -2.2 -5.6 Tol-Pal system protein TolB compare
OKFHMN_27735 ynfL -2.1 -1.9 Uncharacterized HTH-type transcriptional regulator YnfL compare
OKFHMN_28680 yciA -2.1 -1.8 acyl-CoA thioester hydrolase YciA compare
OKFHMN_13585 argC -2.1 -5.3 N-acetyl-gamma-glutamyl-phosphate reductase compare
OKFHMN_28270 dsbB -2.1 -1.7 disulfide bond formation protein DsbB compare
OKFHMN_01260 ydeN -2.0 -1.1 Uncharacterized sulfatase YdeN compare
OKFHMN_05575 lrp -2.0 -3.4 leucine-responsive transcriptional regulator Lrp compare
OKFHMN_17180 cysG -2.0 -6.5 siroheme synthase CysG compare
OKFHMN_20445 cysN -1.9 -7.5 sulfate adenylyltransferase subunit CysN compare
OKFHMN_04450 -1.9 -1.1 acyl carrier protein compare
OKFHMN_27725 asr -1.9 -1.7 acid resistance repetitive basic protein Asr compare
OKFHMN_04420 -1.9 -1.1 Uncharacterized function compare
OKFHMN_22875 nuoI -1.9 -1.9 NADH-quinone oxidoreductase subunit NuoI compare
OKFHMN_18140 pnp -1.8 -5.0 polyribonucleotide nucleotidyltransferase compare
OKFHMN_24050 rcnR -1.8 -1.8 Ni(II)/Co(II)-binding transcriptional repressor RcnR compare
OKFHMN_22285 Ala_trna -1.8 -1.8 tRNA-Ala(ggc) compare
OKFHMN_06815 tolR -1.8 -2.3 colicin uptake protein TolR compare
OKFHMN_00405 repA2 -1.8 -5.1 Replication regulatory protein repA2 compare
OKFHMN_10140 rnhB -1.8 -2.6 ribonuclease HII compare
OKFHMN_27300 ydhY -1.8 -0.9 ferredoxin-like protein compare
OKFHMN_25550 msrQ -1.7 -1.3 protein-methionine-sulfoxide reductase heme-binding subunit MsrQ compare
OKFHMN_02655 trpE -1.7 -2.0 anthranilate synthase component I compare
OKFHMN_03670 flgC -1.6 -1.7 flagellar basal body rod protein FlgC compare
OKFHMN_10060 metQ -1.6 -9.3 methionine ABC transporter substrate-binding lipoprotein MetQ compare
OKFHMN_05235 ompA -1.6 -6.0 outer membrane protein A compare
OKFHMN_26250 nudB -1.6 -4.8 dihydroneopterin triphosphate diphosphatase compare
OKFHMN_26480 kdgR -1.6 -6.6 DNA-binding transcriptional regulator KdgR compare
OKFHMN_05385 aspC -1.6 -2.0 aspartate transaminase compare
OKFHMN_06800 pal -1.5 -2.3 peptidoglycan-associated lipoprotein Pal compare
OKFHMN_25820 uvrC -1.5 -3.3 excinuclease ABC subunit UvrC compare
OKFHMN_22885 nuoK -1.5 -1.7 NADH-quinone oxidoreductase subunit NuoK compare
OKFHMN_21740 bamB -1.5 -4.6 outer membrane protein assembly factor BamB compare
OKFHMN_21215 aroF -1.5 -2.8 3-deoxy-7-phosphoheptulonate synthase AroF compare
OKFHMN_01535 mddA -1.5 -1.1 L-methionine sulfoximine/L-methionine sulfone acetyltransferase compare
OKFHMN_03850 cgsE -1.4 -1.4 curli production assembly/transport protein CsgE compare
OKFHMN_27520 -1.4 -1.3 hypothetical protein compare
OKFHMN_26995 cedA -1.4 -1.6 cell division activator CedA compare
OKFHMN_12255 hfq -1.4 -2.6 RNA chaperone Hfq compare
OKFHMN_10845 apaH -1.4 -2.6 bis(5'-nucleosyl)-tetraphosphatase (symmetrical) ApaH compare
OKFHMN_15775 lldR -1.4 -4.4 transcriptional regulator LldR compare
OKFHMN_15160 -1.4 -2.4 hypothetical protein compare
OKFHMN_27285 lpp -1.4 -1.3 murein lipoprotein Lpp compare
OKFHMN_21735 yfgM -1.4 -1.3 ancillary SecYEG translocon subunit YfgM compare
OKFHMN_28745 -1.3 -1.0 transcriptional regulator compare
OKFHMN_08320 -1.3 -3.0 Lon protease compare
OKFHMN_25520 tccP -1.3 -1.1 Tir-cytoskeleton coupling protein TccP compare
OKFHMN_06910 sucD -1.3 -1.7 succinate--CoA ligase subunit alpha compare
OKFHMN_26460 proQ -1.3 -2.4 RNA chaperone ProQ compare
OKFHMN_01355 sra -1.3 -3.5 stationary-phase-induced ribosome-associated protein compare
OKFHMN_18145 nlpI -1.3 -6.6 lipoprotein NlpI compare
OKFHMN_13685 metJ -1.3 -0.7 met regulon transcriptional regulator MetJ compare
OKFHMN_17925 rapZ -1.3 -5.1 RNase adapter RapZ compare
OKFHMN_27685 ydgH -1.3 -0.8 DUF1471 domain-containing protein compare
OKFHMN_00775 -1.3 -0.9 replication protein compare
OKFHMN_06760 nadA -1.2 -3.5 quinolinate synthase NadA compare
OKFHMN_06560 rrrD -1.2 -1.0 lysozyme RrrD compare
OKFHMN_17795 mdh -1.2 -3.6 malate dehydrogenase compare
OKFHMN_27780 -1.2 -2.2 DUF1161 domain-containing protein compare
OKFHMN_09535 -1.2 -1.3 phage terminase small subunit P27 family compare
OKFHMN_07595 fepG -1.2 -3.1 iron-enterobactin ABC transporter permease compare
OKFHMN_12915 -1.2 -1.7 hypothetical protein compare
OKFHMN_25655 fliR -1.2 -1.1 flagellar type III secretion system protein FliR compare
OKFHMN_10400 panB -1.2 -5.0 3-methyl-2-oxobutanoate hydroxymethyltransferase compare
OKFHMN_25595 yedJ -1.2 -0.9 phosphohydrolase compare
OKFHMN_26915 astD -1.2 -1.4 succinylglutamate-semialdehyde dehydrogenase compare
OKFHMN_26300 znuC -1.2 -2.4 zinc ABC transporter ATP-binding protein ZnuC compare
OKFHMN_07590 fepD -1.2 -2.9 ferrienterobactin ABC transporter permease compare
OKFHMN_17670 yhdU -1.1 -0.7 Inner membrane protein YhdU compare
OKFHMN_14675 hdfR -1.1 -4.2 HTH-type transcriptional regulator HdfR compare
OKFHMN_21420 recO -1.1 -1.9 DNA repair protein RecO compare
OKFHMN_22830 lrhA -1.1 -4.0 transcriptional regulator LrhA compare
OKFHMN_26465 prc -1.1 -5.0 carboxy terminal-processing peptidase compare
OKFHMN_08315 hupB -1.1 -3.4 DNA-binding protein HU-beta compare
OKFHMN_00630 pepT -1.1 -1.1 peptidase T compare
OKFHMN_06735 gpmA -1.1 -1.7 2,3-diphosphoglycerate-dependent phosphoglycerate mutase compare
OKFHMN_07600 fepC -1.1 -3.3 ferrienterobactin ABC transporter ATPase compare
OKFHMN_02185 dgcM -1.1 -1.8 diguanylate cyclase DgcM compare
OKFHMN_26595 fadD -1.1 -1.6 long-chain-fatty-acid--CoA ligase FadD compare
OKFHMN_19240 rdgB -1.1 -2.8 XTP/dITP diphosphatase compare
OKFHMN_08645 yaiY -1.1 -1.0 Inner membrane protein YaiY compare
OKFHMN_28065 -1.1 -1.2 Tail tube protein compare
OKFHMN_21805 purN -1.1 -4.0 phosphoribosylglycinamide formyltransferase compare
OKFHMN_09295 -1.1 -1.8 hypothetical protein compare
OKFHMN_15760 cysE -1.0 -1.1 serine O-acetyltransferase compare
OKFHMN_23975 -1.0 -1.6 Protein compare
OKFHMN_11210 -1.0 -1.3 transcriptional regulator compare
OKFHMN_12140 ulaC -1.0 -2.1 PTS ascorbate transporter subunit IIA compare
OKFHMN_27405 sodB -1.0 -1.1 superoxide dismutase [Fe] compare
OKFHMN_21400 lepA -1.0 -2.1 translation elongation factor 4 compare
OKFHMN_27360 mdtK -1.0 -1.6 multidrug efflux MATE transporter MdtK compare


Specific Phenotypes

None in this experiment

For Escherichia coli ECRC100 in carbon source experiments

For carbon source Sodium-DL-Lactate across organisms