Experiment set2S706 for Escherichia coli ECRC100

Compare to:

D-Glucose

200 most important genes:

  gene name fitness t score description  
OKFHMN_27195 aroD -7.7 -1.9 3-dehydroquinate dehydratase compare
OKFHMN_10725 leuC1 -7.2 -15.3 3-isopropylmalate dehydratase large subunit 1 compare
OKFHMN_02550 pyrF -7.0 -3.5 orotidine-5'-phosphate decarboxylase compare
OKFHMN_03730 pyrC -7.0 -4.8 dihydroorotase compare
OKFHMN_02670 trpB -6.8 -4.4 tryptophan synthase subunit beta compare
OKFHMN_05490 serC -6.4 -6.3 3-phosphoserine/phosphohydroxythreonine transaminase compare
OKFHMN_22615 aroC -6.4 -4.6 chorismate synthase compare
OKFHMN_19460 serA -6.3 -8.9 phosphoglycerate dehydrogenase compare
OKFHMN_13665 metF -6.2 -11.5 methylenetetrahydrofolate reductase compare
OKFHMN_17115 aroB -6.2 -8.7 3-dehydroquinate synthase compare
OKFHMN_10720 leuB -6.1 -12.1 3-isopropylmalate dehydrogenase compare
OKFHMN_10730 leuD -5.9 -5.0 3-isopropylmalate dehydratase small subunit compare
OKFHMN_20380 cysH -5.9 -5.8 phosphoadenosine phosphosulfate reductase compare
OKFHMN_17565 aroE -5.7 -9.5 shikimate dehydrogenase compare
OKFHMN_05485 aroA -5.7 -11.0 3-phosphoshikimate 1-carboxyvinyltransferase compare
OKFHMN_10345 dksA -5.5 -9.1 RNA polymerase-binding protein DksA compare
OKFHMN_24275 dcd -5.5 -2.3 dCTP deaminase compare
OKFHMN_14625 ilvC -5.5 -16.4 ketol-acid reductoisomerase compare
OKFHMN_07835 purE -5.4 -1.8 N5-carboxyaminoimidazole ribonucleotide mutase compare
OKFHMN_04420 -5.4 -1.4 Uncharacterized function compare
OKFHMN_21510 glyA -5.4 -2.3 serine hydroxymethyltransferase compare
OKFHMN_06920 odhB -5.4 -3.0 2-oxoglutarate dehydrogenase complex dihydrolipoyllysine-residue succinyltransferase compare
OKFHMN_26370 -5.3 -1.3 hypothetical protein compare
OKFHMN_08610 proC -5.3 -6.2 pyrroline-5-carboxylate reductase compare
OKFHMN_24505 hisB -5.2 -4.3 bifunctional histidinol-phosphatase/imidazoleglycerol-phosphate dehydratase HisB compare
OKFHMN_05295 pyrD -5.1 -3.5 quinone-dependent dihydroorotate dehydrogenase compare
OKFHMN_21930 purC -5.1 -6.3 phosphoribosylaminoimidazolesuccinocarboxamide synthase compare
OKFHMN_12230 purA -5.1 -3.5 adenylosuccinate synthase compare
OKFHMN_10945 carA -5.1 -12.3 carbamoyl phosphate synthase small subunit compare
OKFHMN_21220 tyrA -5.1 -17.2 bifunctional chorismate mutase/prephenate dehydrogenase compare
OKFHMN_14640 ilvD -5.1 -17.7 dihydroxy-acid dehydratase compare
OKFHMN_13830 pfkA -5.0 -3.5 6-phosphofructokinase compare
OKFHMN_11100 thrC -5.0 -4.9 threonine synthase compare
OKFHMN_09675 proB -4.9 -7.6 Glutamate 5-kinase compare
OKFHMN_10940 carB -4.8 -12.5 carbamoyl-phosphate synthase large subunit compare
OKFHMN_11865 pyrB -4.7 -6.1 aspartate carbamoyltransferase compare
OKFHMN_11200 serB -4.6 -6.6 phosphoserine phosphatase compare
OKFHMN_10715 -4.5 -9.7 2-isopropylmalate synthase compare
OKFHMN_24485 hisIE -4.3 -5.3 bifunctional phosphoribosyl-AMP cyclohydrolase/phosphoribosyl-ATP diphosphatase HisIE compare
OKFHMN_14645 ilvE -4.3 -15.3 branched-chain-amino-acid transaminase compare
OKFHMN_13275 metA -4.2 -6.6 homoserine O-succinyltransferase compare
OKFHMN_24500 hisH -4.1 -2.4 imidazole glycerol phosphate synthase subunit HisH compare
OKFHMN_15600 pyrE -4.1 -5.0 Orotate phosphoribosyltransferase compare
OKFHMN_24520 hisG -4.0 -3.1 ATP phosphoribosyltransferase compare
OKFHMN_13675 metB -3.9 -13.7 cystathionine gamma-synthase compare
OKFHMN_14170 dsbA -3.9 -3.3 thiol:disulfide interchange protein DsbA compare
OKFHMN_02675 trpA -3.9 -2.9 tryptophan synthase subunit alpha compare
OKFHMN_18960 metC -3.9 -10.1 cystathionine beta-lyase compare
OKFHMN_14325 metE -3.9 -13.8 5-methyltetrahydropteroyltriglutamate--homocystei ne S-methyltransferase compare
OKFHMN_11105 thrB -3.9 -10.7 homoserine kinase compare
OKFHMN_12035 cysQ -3.8 -10.3 3'(2'),5'-bisphosphate nucleotidase CysQ compare
OKFHMN_24495 hisA -3.7 -2.1 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)me thylideneamino]imidazole-4-carboxamide isomerase compare
OKFHMN_24515 hisD -3.7 -5.2 Histidinol dehydrogenase compare
OKFHMN_20375 cysI -3.7 -7.8 assimilatory sulfite reductase (NADPH) hemoprotein subunit compare
OKFHMN_21225 pheA -3.7 -5.9 bifunctional chorismate mutase/prephenate dehydratase compare
OKFHMN_22190 ptsI -3.7 -7.0 phosphoenolpyruvate-protein phosphotransferase PtsI compare
OKFHMN_14635 ilvA -3.7 -8.4 threonine ammonia-lyase, biosynthetic compare
OKFHMN_08485 parD -3.6 -2.1 Antitoxin ParD compare
OKFHMN_21810 purM -3.6 -9.9 Phosphoribosylformylglycinamidine cyclo-ligase compare
OKFHMN_20370 cysJ -3.5 -10.0 NADPH-dependent assimilatory sulfite reductase flavoprotein subunit compare
OKFHMN_14330 metR -3.5 -10.8 HTH-type transcriptional regulator MetR compare
OKFHMN_21760 guaB -3.5 -4.1 IMP dehydrogenase compare
OKFHMN_13595 ppc -3.4 -12.5 phosphoenolpyruvate carboxylase compare
OKFHMN_06810 tolA -3.4 -5.2 cell envelope integrity protein TolA compare
OKFHMN_20450 cysC -3.3 -7.9 Adenylyl-sulfate kinase compare
OKFHMN_13310 purH -3.3 -11.2 bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase compare
OKFHMN_05575 lrp -3.3 -5.4 leucine-responsive transcriptional regulator Lrp compare
OKFHMN_18090 argG -3.3 -8.0 argininosuccinate synthase compare
OKFHMN_24510 hisC -3.3 -3.4 histidinol-phosphate transaminase compare
OKFHMN_02655 trpE -3.3 -3.9 anthranilate synthase component I compare
OKFHMN_13175 pgi -3.2 -8.9 glucose-6-phosphate isomerase compare
OKFHMN_00130 sopA -3.2 -5.3 plasmid-partitioning protein SopA compare
OKFHMN_17110 aroK -3.1 -4.1 shikimate kinase AroK compare
OKFHMN_22200 cysK -3.1 -9.2 cysteine synthase A compare
OKFHMN_09670 proA -3.1 -9.0 glutamate-5-semialdehyde dehydrogenase compare
OKFHMN_11835 argF -3.1 -8.2 ornithine carbamoyltransferase compare
OKFHMN_13575 argH -3.0 -8.1 argininosuccinate lyase compare
OKFHMN_21470 purL -3.0 -12.5 phosphoribosylformylglycinamidine synthase compare
OKFHMN_13590 argE -2.9 -11.7 acetylornithine deacetylase compare
OKFHMN_28400 dhaK -2.9 -1.7 dihydroxyacetone kinase subunit DhaK compare
OKFHMN_13315 purD -2.9 -9.4 Phosphoribosylamine--glycine ligase compare
OKFHMN_19945 lysA -2.8 -12.6 diaminopimelate decarboxylase compare
OKFHMN_14630 ilvY -2.8 -10.3 HTH-type transcriptional activator IlvY compare
OKFHMN_22715 purF -2.8 -7.6 amidophosphoribosyltransferase compare
OKFHMN_06760 nadA -2.8 -7.7 quinolinate synthase NadA compare
OKFHMN_14100 glnA -2.7 -3.5 glutamate--ammonia ligase compare
OKFHMN_02660 trpD -2.7 -2.4 bifunctional anthranilate synthase glutamate amidotransferase component TrpG/anthranilate phosphoribosyltransferase TrpD compare
OKFHMN_22660 pdxB -2.7 -7.8 4-phosphoerythronate dehydrogenase PdxB compare
OKFHMN_00135 sopA -2.6 -3.4 plasmid-partitioning protein SopA compare
OKFHMN_17180 cysG -2.6 -9.1 siroheme synthase CysG compare
OKFHMN_13580 -2.6 -7.9 acetylglutamate kinase compare
OKFHMN_11110 thrA -2.6 -12.2 bifunctional aspartate kinase/homoserine dehydrogenase I compare
OKFHMN_07840 purK -2.6 -4.8 5-(carboxyamino)imidazole ribonucleotide synthase compare
OKFHMN_20440 cysD -2.6 -9.6 sulfate adenylyltransferase subunit CysD compare
OKFHMN_20060 argA -2.5 -8.5 amino-acid N-acetyltransferase compare
OKFHMN_10360 folK -2.5 -2.1 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine diphosphokinase compare
OKFHMN_06960 gltA -2.4 -4.3 citrate synthase compare
OKFHMN_02665 trpCF -2.4 -4.8 bifunctional indole-3-glycerol-phosphate synthase TrpC/phosphoribosylanthranilate isomerase TrpF compare
OKFHMN_19940 lysR -2.4 -6.9 DNA-binding transcriptional regulator LysR compare
OKFHMN_13585 argC -2.3 -7.9 N-acetyl-gamma-glutamyl-phosphate reductase compare
OKFHMN_20445 cysN -2.3 -5.4 sulfate adenylyltransferase subunit CysN compare
OKFHMN_12260 miaA -2.3 -3.3 tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA compare
OKFHMN_03395 ydaS -2.1 -2.4 transcriptional regulator compare
OKFHMN_10830 pdxA -2.1 -7.3 4-hydroxythreonine-4-phosphate dehydrogenase PdxA compare
OKFHMN_06250 ybiI -2.1 -2.1 C4-type zinc finger protein YbiI compare
OKFHMN_17930 ptsN -2.1 -3.9 PTS IIA-like nitrogen regulatory protein PtsN compare
OKFHMN_10415 panD -2.0 -5.5 aspartate 1-decarboxylase compare
OKFHMN_10405 panC -2.0 -4.7 pantoate--beta-alanine ligase compare
OKFHMN_06735 gpmA -2.0 -4.3 2,3-diphosphoglycerate-dependent phosphoglycerate mutase compare
OKFHMN_10045 gmhB -1.8 -3.0 D-glycero-beta-D-manno-heptose 1,7-bisphosphate 7-phosphatase compare
OKFHMN_03010 -1.8 -1.6 DNA-binding protein compare
OKFHMN_26505 mntP -1.8 -1.2 manganese efflux pump MntP compare
OKFHMN_26295 znuB -1.8 -3.3 zinc ABC transporter permease subunit ZnuB compare
OKFHMN_05385 aspC -1.8 -2.1 aspartate transaminase compare
OKFHMN_10400 panB -1.8 -5.7 3-methyl-2-oxobutanoate hydroxymethyltransferase compare
OKFHMN_06800 pal -1.7 -2.5 peptidoglycan-associated lipoprotein Pal compare
OKFHMN_10825 surA -1.7 -6.5 peptidylprolyl isomerase SurA compare
OKFHMN_22285 Ala_trna -1.7 -1.8 tRNA-Ala(ggc) compare
OKFHMN_04450 -1.7 -1.3 acyl carrier protein compare
OKFHMN_14835 atpC -1.7 -1.0 F0F1 ATP synthase subunit epsilon compare
OKFHMN_07590 fepD -1.7 -3.4 ferrienterobactin ABC transporter permease compare
OKFHMN_26605 rnd -1.6 -2.8 ribonuclease D compare
OKFHMN_26465 prc -1.6 -8.6 carboxy terminal-processing peptidase compare
OKFHMN_13345 hupA -1.6 -2.3 DNA-binding protein HU-alpha compare
OKFHMN_18140 pnp -1.6 -5.3 polyribonucleotide nucleotidyltransferase compare
OKFHMN_06805 tolB -1.6 -4.9 Tol-Pal system protein TolB compare
OKFHMN_21100 espW -1.6 -2.5 T3SS effector EspW compare
OKFHMN_24265 -1.6 -1.5 Putative diguanylate cyclase YegE compare
OKFHMN_26345 kdgA -1.6 -2.2 bifunctional 4-hydroxy-2-oxoglutarate aldolase/2-dehydro-3-deoxy-phosphogluconate aldolase compare
OKFHMN_02445 puuA -1.5 -2.3 glutamate-putrescine ligase compare
OKFHMN_10530 nadC -1.5 -6.7 carboxylating nicotinate-nucleotide diphosphorylase compare
OKFHMN_22550 yfcZ -1.5 -2.2 UPF0381 protein YfcZ compare
OKFHMN_21705 ndk -1.5 -1.9 nucleoside-diphosphate kinase compare
OKFHMN_28425 dauA -1.5 -2.2 C4-dicarboxylic acid transporter DauA compare
OKFHMN_01810 nifJ -1.5 -2.9 pyruvate:ferredoxin (flavodoxin) oxidoreductase compare
OKFHMN_26250 nudB -1.5 -3.8 dihydroneopterin triphosphate diphosphatase compare
OKFHMN_28570 purU -1.5 -2.5 formyltetrahydrofolate deformylase compare
OKFHMN_16725 -1.5 -1.3 DUF1778 domain-containing protein compare
OKFHMN_28270 dsbB -1.5 -1.3 disulfide bond formation protein DsbB compare
OKFHMN_15150 -1.4 -7.5 Acetolactate synthase compare
OKFHMN_01565 potB -1.4 -2.7 spermidine/putrescine ABC transporter permease compare
OKFHMN_09940 -1.4 -2.1 Peptidoglycan-binding protein LysM compare
OKFHMN_01535 mddA -1.4 -1.4 L-methionine sulfoximine/L-methionine sulfone acetyltransferase compare
OKFHMN_21740 bamB -1.4 -3.7 outer membrane protein assembly factor BamB compare
OKFHMN_04580 efeU -1.4 -1.1 Ferrous iron permease EfeU compare
OKFHMN_21370 nadB -1.4 -7.8 L-aspartate oxidase compare
OKFHMN_17925 rapZ -1.4 -5.5 RNase adapter RapZ compare
OKFHMN_22710 cvpA -1.4 -3.3 colicin V production protein compare
OKFHMN_21425 pdxJ -1.3 -1.8 pyridoxine 5'-phosphate synthase compare
OKFHMN_07595 fepG -1.3 -3.1 iron-enterobactin ABC transporter permease compare
OKFHMN_24220 -1.3 -1.0 Type I toxin-antitoxin system Ibs family toxin compare
OKFHMN_14540 wzxE -1.3 -2.1 lipid III flippase WzxE compare
OKFHMN_25595 yedJ -1.3 -1.0 phosphohydrolase compare
OKFHMN_05210 helD -1.3 -2.0 DNA helicase IV compare
OKFHMN_26015 -1.3 -0.9 AMP nucleosidase compare
OKFHMN_03620 rne -1.3 -3.7 ribonuclease E compare
OKFHMN_07580 fepB -1.3 -5.4 ferrienterobactin ABC transporter periplasmic binding protein compare
OKFHMN_02630 rluB -1.3 -2.5 23S rRNA pseudouridine(2605) synthase RluB compare
OKFHMN_19765 -1.3 -0.9 type III secretion protein compare
OKFHMN_23370 -1.3 -1.8 Protein compare
OKFHMN_14655 ilvG -1.3 -6.8 acetolactate synthase 2 catalytic subunit compare
OKFHMN_06035 deoR -1.3 -2.1 DNA-binding transcriptional repressor DeoR compare
OKFHMN_21215 aroF -1.2 -3.3 3-deoxy-7-phosphoheptulonate synthase AroF compare
OKFHMN_24850 -1.2 -2.0 lysis protein compare
OKFHMN_18330 agaV -1.2 -2.0 PTS N-acetylgalactosamine transporter subunit IIB compare
OKFHMN_10710 leuL -1.2 -2.5 leu operon leader peptide compare
OKFHMN_15695 rfaF -1.2 -2.5 ADP-heptose--LPS heptosyltransferase RfaF compare
OKFHMN_13390 thiS -1.2 -3.1 sulfur carrier protein ThiS compare
OKFHMN_23410 yeiR -1.2 -0.9 zinc-binding GTPase YeiR compare
OKFHMN_14670 maoP -1.2 -4.4 macrodomain Ori organization protein MaoP compare
OKFHMN_24820 iraM -1.2 -1.5 Anti-adapter protein IraM compare
OKFHMN_10060 metQ -1.2 -6.6 methionine ABC transporter substrate-binding lipoprotein MetQ compare
OKFHMN_15310 etgA -1.2 -1.4 type III secretion system LEE muramidase EtgA compare
OKFHMN_02500 acrA -1.2 -1.4 efflux transporter periplasmic adaptor subunit compare
OKFHMN_14395 corA -1.2 -1.7 magnesium/cobalt transporter CorA compare
OKFHMN_11115 thrL -1.2 -1.9 thr operon leader peptide compare
OKFHMN_18145 nlpI -1.2 -6.7 lipoprotein NlpI compare
OKFHMN_06815 tolR -1.2 -1.6 colicin uptake protein TolR compare
OKFHMN_17665 acrS -1.2 -1.2 multidrug efflux transporter transcriptional repressor AcrS compare
OKFHMN_26880 ynjA -1.2 -1.2 Uncharacterized protein YnjA compare
OKFHMN_06475 -1.1 -0.9 phage tail protein compare
OKFHMN_17810 zapG -1.1 -1.6 Z-ring associated protein ZapG compare
OKFHMN_16735 panM -1.1 -1.4 aspartate 1-decarboxylase autocleavage activator PanM compare
OKFHMN_22830 lrhA -1.1 -4.3 transcriptional regulator LrhA compare
OKFHMN_03845 cgsD -1.1 -1.2 transcriptional regulator CsgD compare
OKFHMN_25915 -1.1 -2.1 peptide transporter compare
OKFHMN_24035 -1.1 -1.8 pilus assembly protein compare
OKFHMN_27265 sufD -1.1 -1.3 Fe-S cluster assembly protein SufD compare
OKFHMN_04050 -1.1 -0.8 DNA-binding protein compare
OKFHMN_01540 -1.1 -1.0 Putative inner membrane exporter, YdcZ compare
OKFHMN_20250 relA -1.0 -6.4 GTP diphosphokinase compare
OKFHMN_00405 repA2 -1.0 -4.0 Replication regulatory protein repA2 compare
OKFHMN_07600 fepC -1.0 -3.0 ferrienterobactin ABC transporter ATPase compare
OKFHMN_05915 artJ -1.0 -1.7 ABC transporter substrate-binding protein ArtJ compare
OKFHMN_08320 -1.0 -2.1 Lon protease compare
OKFHMN_13380 thiE -1.0 -3.9 thiamine phosphate synthase compare
OKFHMN_24935 -1.0 -1.6 phage tail tape measure protein compare
OKFHMN_21615 iscR -0.9 -2.0 Fe-S cluster assembly transcriptional regulator IscR compare
OKFHMN_09560 -0.9 -2.3 phage holin, lambda family compare
OKFHMN_28695 ompW -0.9 -2.2 outer membrane protein OmpW compare


Specific Phenotypes

None in this experiment

For Escherichia coli ECRC100 in carbon source experiments

For carbon source D-Glucose across organisms