Experiment set2S683 for Escherichia coli ECRC100

Compare to:

L-Arabinose

200 most important genes:

  gene name fitness t score description  
OKFHMN_10730 leuD -8.2 -5.9 3-isopropylmalate dehydratase small subunit compare
OKFHMN_02675 trpA -8.1 -4.2 tryptophan synthase subunit alpha compare
OKFHMN_19460 serA -7.8 -11.0 phosphoglycerate dehydrogenase compare
OKFHMN_21930 purC -7.4 -4.7 phosphoribosylaminoimidazolesuccinocarboxamide synthase compare
OKFHMN_22615 aroC -6.9 -6.2 chorismate synthase compare
OKFHMN_10725 leuC1 -6.8 -14.5 3-isopropylmalate dehydratase large subunit 1 compare
OKFHMN_13665 metF -6.7 -10.0 methylenetetrahydrofolate reductase compare
OKFHMN_24500 hisH -6.7 -2.7 imidazole glycerol phosphate synthase subunit HisH compare
OKFHMN_06815 tolR -6.4 -4.4 colicin uptake protein TolR compare
OKFHMN_05490 serC -6.1 -7.2 3-phosphoserine/phosphohydroxythreonine transaminase compare
OKFHMN_24520 hisG -6.1 -3.4 ATP phosphoribosyltransferase compare
OKFHMN_17565 aroE -6.0 -11.9 shikimate dehydrogenase compare
OKFHMN_06800 pal -6.0 -4.2 peptidoglycan-associated lipoprotein Pal compare
OKFHMN_10845 apaH -5.7 -6.7 bis(5'-nucleosyl)-tetraphosphatase (symmetrical) ApaH compare
OKFHMN_24275 dcd -5.6 -2.2 dCTP deaminase compare
OKFHMN_10720 leuB -5.6 -11.0 3-isopropylmalate dehydrogenase compare
OKFHMN_21510 glyA -5.5 -2.2 serine hydroxymethyltransferase compare
OKFHMN_26370 -5.5 -1.3 hypothetical protein compare
OKFHMN_21810 purM -5.5 -10.0 Phosphoribosylformylglycinamidine cyclo-ligase compare
OKFHMN_14420 xerC -5.5 -2.2 tyrosine recombinase XerC compare
OKFHMN_05295 pyrD -5.3 -3.4 quinone-dependent dihydroorotate dehydrogenase compare
OKFHMN_05485 aroA -5.3 -11.3 3-phosphoshikimate 1-carboxyvinyltransferase compare
OKFHMN_02670 trpB -5.2 -4.6 tryptophan synthase subunit beta compare
OKFHMN_14625 ilvC -5.2 -17.8 ketol-acid reductoisomerase compare
OKFHMN_12230 purA -5.2 -3.6 adenylosuccinate synthase compare
OKFHMN_14640 ilvD -5.1 -15.8 dihydroxy-acid dehydratase compare
OKFHMN_17115 aroB -4.7 -9.6 3-dehydroquinate synthase compare
OKFHMN_10790 araD -4.7 -14.3 L-ribulose-5-phosphate 4-epimerase compare
OKFHMN_10345 dksA -4.7 -5.9 RNA polymerase-binding protein DksA compare
OKFHMN_21225 pheA -4.7 -6.1 bifunctional chorismate mutase/prephenate dehydratase compare
OKFHMN_06810 tolA -4.6 -7.0 cell envelope integrity protein TolA compare
OKFHMN_03730 pyrC -4.6 -5.9 dihydroorotase compare
OKFHMN_10715 -4.6 -11.7 2-isopropylmalate synthase compare
OKFHMN_06805 tolB -4.6 -8.2 Tol-Pal system protein TolB compare
OKFHMN_11100 thrC -4.5 -11.4 threonine synthase compare
OKFHMN_21220 tyrA -4.4 -16.2 bifunctional chorismate mutase/prephenate dehydrogenase compare
OKFHMN_06960 gltA -4.4 -7.9 citrate synthase compare
OKFHMN_21760 guaB -4.2 -5.3 IMP dehydrogenase compare
OKFHMN_07840 purK -4.2 -6.9 5-(carboxyamino)imidazole ribonucleotide synthase compare
OKFHMN_13310 purH -4.1 -13.2 bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase compare
OKFHMN_08610 proC -4.1 -5.6 pyrroline-5-carboxylate reductase compare
OKFHMN_14325 metE -4.1 -17.3 5-methyltetrahydropteroyltriglutamate--homocystei ne S-methyltransferase compare
OKFHMN_20380 cysH -4.1 -5.5 phosphoadenosine phosphosulfate reductase compare
OKFHMN_05235 ompA -4.1 -6.1 outer membrane protein A compare
OKFHMN_13315 purD -4.0 -9.5 Phosphoribosylamine--glycine ligase compare
OKFHMN_02550 pyrF -3.9 -3.3 orotidine-5'-phosphate decarboxylase compare
OKFHMN_20450 cysC -3.9 -9.7 Adenylyl-sulfate kinase compare
OKFHMN_13575 argH -3.9 -7.3 argininosuccinate lyase compare
OKFHMN_14645 ilvE -3.9 -11.3 branched-chain-amino-acid transaminase compare
OKFHMN_09670 proA -3.8 -9.7 glutamate-5-semialdehyde dehydrogenase compare
OKFHMN_21425 pdxJ -3.8 -2.6 pyridoxine 5'-phosphate synthase compare
OKFHMN_11105 thrB -3.8 -14.5 homoserine kinase compare
OKFHMN_14330 metR -3.7 -9.7 HTH-type transcriptional regulator MetR compare
OKFHMN_20375 cysI -3.7 -9.4 assimilatory sulfite reductase (NADPH) hemoprotein subunit compare
OKFHMN_21470 purL -3.6 -13.3 phosphoribosylformylglycinamidine synthase compare
OKFHMN_22715 purF -3.6 -7.7 amidophosphoribosyltransferase compare
OKFHMN_09675 proB -3.6 -5.7 Glutamate 5-kinase compare
OKFHMN_27195 aroD -3.6 -2.6 3-dehydroquinate dehydratase compare
OKFHMN_24510 hisC -3.6 -3.6 histidinol-phosphate transaminase compare
OKFHMN_10825 surA -3.5 -8.1 peptidylprolyl isomerase SurA compare
OKFHMN_10945 carA -3.5 -10.2 carbamoyl phosphate synthase small subunit compare
OKFHMN_24505 hisB -3.5 -3.0 bifunctional histidinol-phosphatase/imidazoleglycerol-phosphate dehydratase HisB compare
OKFHMN_11200 serB -3.5 -5.1 phosphoserine phosphatase compare
OKFHMN_13675 metB -3.5 -15.1 cystathionine gamma-synthase compare
OKFHMN_10940 carB -3.5 -12.1 carbamoyl-phosphate synthase large subunit compare
OKFHMN_13595 ppc -3.5 -14.3 phosphoenolpyruvate carboxylase compare
OKFHMN_18960 metC -3.4 -9.6 cystathionine beta-lyase compare
OKFHMN_00135 sopA -3.4 -4.8 plasmid-partitioning protein SopA compare
OKFHMN_05575 lrp -3.3 -5.4 leucine-responsive transcriptional regulator Lrp compare
OKFHMN_14635 ilvA -3.2 -12.0 threonine ammonia-lyase, biosynthetic compare
OKFHMN_18090 argG -3.2 -12.7 argininosuccinate synthase compare
OKFHMN_24495 hisA -3.2 -2.9 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)me thylideneamino]imidazole-4-carboxamide isomerase compare
OKFHMN_22200 cysK -3.2 -8.5 cysteine synthase A compare
OKFHMN_13830 pfkA -3.2 -5.1 6-phosphofructokinase compare
OKFHMN_14170 dsbA -3.1 -3.0 thiol:disulfide interchange protein DsbA compare
OKFHMN_13275 metA -3.1 -5.2 homoserine O-succinyltransferase compare
OKFHMN_14630 ilvY -3.1 -9.3 HTH-type transcriptional activator IlvY compare
OKFHMN_12035 cysQ -3.1 -8.4 3'(2'),5'-bisphosphate nucleotidase CysQ compare
OKFHMN_26250 nudB -3.1 -4.7 dihydroneopterin triphosphate diphosphatase compare
OKFHMN_20370 cysJ -3.1 -10.4 NADPH-dependent assimilatory sulfite reductase flavoprotein subunit compare
OKFHMN_10830 pdxA -3.1 -7.9 4-hydroxythreonine-4-phosphate dehydrogenase PdxA compare
OKFHMN_11865 pyrB -3.0 -3.6 aspartate carbamoyltransferase compare
OKFHMN_15600 pyrE -2.9 -3.6 Orotate phosphoribosyltransferase compare
OKFHMN_22660 pdxB -2.8 -6.8 4-phosphoerythronate dehydrogenase PdxB compare
OKFHMN_24485 hisIE -2.8 -3.7 bifunctional phosphoribosyl-AMP cyclohydrolase/phosphoribosyl-ATP diphosphatase HisIE compare
OKFHMN_11110 thrA -2.6 -13.6 bifunctional aspartate kinase/homoserine dehydrogenase I compare
OKFHMN_11835 argF -2.6 -8.4 ornithine carbamoyltransferase compare
OKFHMN_20060 argA -2.6 -8.5 amino-acid N-acetyltransferase compare
OKFHMN_06560 rrrD -2.6 -1.3 lysozyme RrrD compare
OKFHMN_06920 odhB -2.6 -2.1 2-oxoglutarate dehydrogenase complex dihydrolipoyllysine-residue succinyltransferase compare
OKFHMN_13585 argC -2.6 -6.2 N-acetyl-gamma-glutamyl-phosphate reductase compare
OKFHMN_10325 mrcB -2.5 -14.6 bifunctional glycosyl transferase/transpeptidase conserved
OKFHMN_17110 aroK -2.5 -2.7 shikimate kinase AroK compare
OKFHMN_17180 cysG -2.5 -8.8 siroheme synthase CysG compare
OKFHMN_21800 ppk1 -2.5 -7.8 polyphosphate kinase 1 compare
OKFHMN_22285 Ala_trna -2.5 -2.0 tRNA-Ala(ggc) compare
OKFHMN_02665 trpCF -2.5 -5.4 bifunctional indole-3-glycerol-phosphate synthase TrpC/phosphoribosylanthranilate isomerase TrpF compare
OKFHMN_19945 lysA -2.5 -9.8 diaminopimelate decarboxylase compare
OKFHMN_18140 pnp -2.4 -6.3 polyribonucleotide nucleotidyltransferase compare
OKFHMN_10360 folK -2.3 -2.8 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine diphosphokinase compare
OKFHMN_27820 dnaQ -2.3 -1.2 exonuclease compare
OKFHMN_20440 cysD -2.3 -9.2 sulfate adenylyltransferase subunit CysD compare
OKFHMN_14540 wzxE -2.3 -3.8 lipid III flippase WzxE compare
OKFHMN_02660 trpD -2.3 -3.0 bifunctional anthranilate synthase glutamate amidotransferase component TrpG/anthranilate phosphoribosyltransferase TrpD compare
OKFHMN_13580 -2.3 -7.6 acetylglutamate kinase compare
OKFHMN_01535 mddA -2.3 -1.6 L-methionine sulfoximine/L-methionine sulfone acetyltransferase compare
OKFHMN_13590 argE -2.2 -9.5 acetylornithine deacetylase compare
OKFHMN_28590 galU -2.2 -6.0 UTP--glucose-1-phosphate uridylyltransferase GalU compare
OKFHMN_24515 hisD -2.2 -3.1 Histidinol dehydrogenase compare
OKFHMN_19515 ubiI -2.2 -2.4 FAD-dependent 2-octaprenylphenol hydroxylase compare
OKFHMN_06760 nadA -2.2 -5.5 quinolinate synthase NadA compare
OKFHMN_28570 purU -2.1 -3.0 formyltetrahydrofolate deformylase compare
OKFHMN_20445 cysN -2.1 -7.6 sulfate adenylyltransferase subunit CysN compare
OKFHMN_23270 napH -2.1 -2.5 quinol dehydrogenase ferredoxin subunit NapH compare
OKFHMN_19750 -2.1 -0.9 YopN/LcrE/InvE/MxiC type III secretion system gatekeeper compare
OKFHMN_02655 trpE -2.0 -3.0 anthranilate synthase component I compare
OKFHMN_10785 araA -2.0 -7.9 L-arabinose isomerase compare
OKFHMN_19940 lysR -2.0 -6.6 DNA-binding transcriptional regulator LysR compare
OKFHMN_11115 thrL -2.0 -1.9 thr operon leader peptide compare
OKFHMN_03395 ydaS -2.0 -1.3 transcriptional regulator compare
OKFHMN_25520 tccP -2.0 -1.4 Tir-cytoskeleton coupling protein TccP compare
OKFHMN_14890 pstA -2.0 -1.9 phosphate ABC transporter permease PstA compare
OKFHMN_10530 nadC -2.0 -5.1 carboxylating nicotinate-nucleotide diphosphorylase compare
OKFHMN_28425 dauA -2.0 -2.3 C4-dicarboxylic acid transporter DauA compare
OKFHMN_10780 araB -1.9 -9.0 ribulokinase compare
OKFHMN_11765 Leu_trna -1.9 -1.2 tRNA-Leu(caa) compare
OKFHMN_08485 parD -1.9 -1.4 Antitoxin ParD compare
OKFHMN_21740 bamB -1.9 -6.3 outer membrane protein assembly factor BamB compare
OKFHMN_08215 tomB -1.9 -1.6 Hha toxicity modulator TomB compare
OKFHMN_17830 sspA -1.9 -1.9 stringent starvation protein A compare
OKFHMN_00130 sopA -1.8 -2.9 plasmid-partitioning protein SopA compare
OKFHMN_08035 cueR -1.8 -1.8 Cu(I)-responsive transcriptional regulator compare
OKFHMN_26520 manZ -1.8 -1.7 PTS mannose transporter subunit IID compare
OKFHMN_28270 dsbB -1.8 -1.5 disulfide bond formation protein DsbB compare
OKFHMN_26465 prc -1.8 -6.3 carboxy terminal-processing peptidase compare
OKFHMN_10775 araC -1.7 -7.3 arabinose operon transcriptional regulator AraC compare
OKFHMN_02445 puuA -1.7 -2.5 glutamate-putrescine ligase compare
OKFHMN_01635 rimL -1.7 -1.1 50S ribosomal protein L7/L12-serine acetyltransferase compare
OKFHMN_11170 sltY -1.7 -9.9 murein transglycosylase conserved
OKFHMN_14835 atpC -1.7 -0.9 F0F1 ATP synthase subunit epsilon compare
OKFHMN_27735 ynfL -1.7 -1.9 Uncharacterized HTH-type transcriptional regulator YnfL compare
OKFHMN_22190 ptsI -1.7 -3.9 phosphoenolpyruvate-protein phosphotransferase PtsI compare
OKFHMN_21370 nadB -1.7 -10.5 L-aspartate oxidase compare
OKFHMN_07580 fepB -1.7 -6.6 ferrienterobactin ABC transporter periplasmic binding protein compare
OKFHMN_14100 glnA -1.7 -1.9 glutamate--ammonia ligase compare
OKFHMN_07590 fepD -1.6 -3.7 ferrienterobactin ABC transporter permease compare
OKFHMN_18145 nlpI -1.6 -8.4 lipoprotein NlpI compare
OKFHMN_13390 thiS -1.6 -4.0 sulfur carrier protein ThiS compare
OKFHMN_14670 maoP -1.6 -5.0 macrodomain Ori organization protein MaoP compare
OKFHMN_24635 exoD -1.5 -2.5 Putative uncharacterized protein ExoD compare
OKFHMN_28675 tonB -1.5 -2.1 TonB system transport protein TonB compare
OKFHMN_25965 -1.5 -1.2 Phage protein compare
OKFHMN_10060 metQ -1.5 -7.3 methionine ABC transporter substrate-binding lipoprotein MetQ compare
OKFHMN_22155 cysT -1.5 -4.7 sulfate/thiosulfate ABC transporter permease CysT compare
OKFHMN_22165 cysA -1.4 -4.6 sulfate/thiosulfate ABC transporter ATP-binding protein CysA compare
OKFHMN_26300 znuC -1.4 -3.1 zinc ABC transporter ATP-binding protein ZnuC compare
OKFHMN_26720 yeaE -1.4 -1.4 methylglyoxal reductase YeaE compare
OKFHMN_22670 truA -1.4 -5.3 aspartate-semialdehyde dehydrogenase compare
OKFHMN_15150 -1.4 -8.4 Acetolactate synthase compare
OKFHMN_08645 yaiY -1.4 -1.1 Inner membrane protein YaiY compare
OKFHMN_13375 thiC -1.4 -8.8 phosphomethylpyrimidine synthase ThiC compare
OKFHMN_04450 -1.4 -1.8 acyl carrier protein compare
OKFHMN_23620 yohP -1.4 -1.4 protein YohP compare
OKFHMN_11080 -1.4 -5.9 transaldolase B compare
OKFHMN_02230 abgT -1.3 -1.5 p-aminobenzoyl-glutamate transporter compare
OKFHMN_01370 yddM -1.3 -1.1 HigA family addiction module antitoxin compare
OKFHMN_04200 -1.3 -1.4 IS66 family transposase compare
OKFHMN_14595 trxA -1.3 -1.5 thioredoxin TrxA compare
OKFHMN_00630 pepT -1.3 -1.8 peptidase T compare
OKFHMN_13385 thiF -1.3 -6.7 thiazole biosynthesis adenylyltransferase ThiF compare
OKFHMN_03850 cgsE -1.3 -1.3 curli production assembly/transport protein CsgE compare
OKFHMN_17670 yhdU -1.3 -0.8 Inner membrane protein YhdU compare
OKFHMN_13380 thiE -1.3 -4.7 thiamine phosphate synthase compare
OKFHMN_28105 -1.2 -1.7 phage portal protein compare
OKFHMN_25890 cysE -1.2 -0.9 serine acetyltransferase compare
OKFHMN_22710 cvpA -1.2 -3.0 colicin V production protein compare
OKFHMN_02365 ugpA -1.2 -1.4 sugar ABC transporter permease compare
OKFHMN_01375 fdnI -1.2 -2.2 formate dehydrogenase-N subunit gamma compare
OKFHMN_19160 -1.2 -1.6 IS66 family transposase compare
OKFHMN_01165 lsrC -1.2 -1.2 autoinducer 2 ABC transporter permease LsrC compare
OKFHMN_15340 escJ -1.2 -0.7 type III secretion system LEE inner membrane ring protein EscJ compare
OKFHMN_14675 hdfR -1.2 -6.8 HTH-type transcriptional regulator HdfR compare
OKFHMN_25595 yedJ -1.2 -0.9 phosphohydrolase compare
OKFHMN_18820 cpdA -1.2 -4.7 3',5'-cyclic-AMP phosphodiesterase compare
OKFHMN_02430 puuC -1.2 -0.9 aldehyde dehydrogenase PuuC compare
OKFHMN_15760 cysE -1.2 -1.2 serine O-acetyltransferase compare
OKFHMN_13345 hupA -1.2 -2.8 DNA-binding protein HU-alpha compare
OKFHMN_14655 ilvG -1.2 -6.7 acetolactate synthase 2 catalytic subunit compare
OKFHMN_10140 rnhB -1.1 -1.7 ribonuclease HII compare
OKFHMN_13400 thiH -1.1 -5.1 2-iminoacetate synthase ThiH compare
OKFHMN_21805 purN -1.1 -3.7 phosphoribosylglycinamide formyltransferase compare
OKFHMN_28745 -1.1 -0.9 transcriptional regulator compare
OKFHMN_26645 yoaG -1.1 -1.1 Protein YoaG compare
OKFHMN_03635 flgJ -1.1 -1.5 flagellar assembly peptidoglycan hydrolase FlgJ compare
OKFHMN_16090 Pro_trna -1.1 -0.7 tRNA-Pro(cgg) compare
OKFHMN_18330 agaV -1.1 -1.2 PTS N-acetylgalactosamine transporter subunit IIB compare
OKFHMN_24445 wcaG -1.1 -1.5 GDP-fucose synthetase compare
OKFHMN_26755 ydjJ -1.1 -2.2 Uncharacterized zinc-type alcohol dehydrogenase-like protein YdjJ compare
OKFHMN_06755 pnuC -1.1 -2.9 nicotinamide riboside transporter PnuC compare
OKFHMN_13395 thiG -1.1 -2.5 thiazole synthase compare


Specific Phenotypes

For 2 genes in this experiment

For carbon source L-Arabinose in Escherichia coli ECRC100

For carbon source L-Arabinose across organisms