Experiment set2S683 for Escherichia coli ECRC100
L-Arabinose
Group: carbon sourceMedia: M9_plus_L-Arabinose + L-Arabinose (20 mM)
Culturing: Ecoli_ECRC100_ML1, 48 well microplate, Aerobic, at 37 (C), shaken=double orbital, continuous, 205cpm
By: Lucas on 12/6/24
Specific Phenotypes
For 2 genes in this experiment
For carbon source L-Arabinose in Escherichia coli ECRC100
For carbon source L-Arabinose across organisms
SEED Subsystems
| Subsystem | #Specific |
|---|---|
| Peptidoglycan Biosynthesis | 1 |
| Type IV pilus | 1 |
Metabolic Maps
Color code by fitness: see overview map or list of maps.
Maps containing gene(s) with specific phenotypes:
- Peptidoglycan biosynthesis
- Ascorbate and aldarate metabolism
- Ubiquinone and menaquinone biosynthesis
- Lysine degradation
- Nucleotide sugars metabolism
- Glycosaminoglycan degradation
- Biotin metabolism
MetaCyc Pathways
Pathways that contain genes with specific phenotypes:
| Pathway | #Steps | #Present | #Specific |
|---|---|---|---|
| peptidoglycan maturation (meso-diaminopimelate containing) | 12 | 6 | 3 |
| peptidoglycan biosynthesis IV (Enterococcus faecium) | 17 | 12 | 2 |
| peptidoglycan biosynthesis II (staphylococci) | 17 | 12 | 2 |
| peptidoglycan biosynthesis V (β-lactam resistance) | 17 | 11 | 2 |
| peptidoglycan recycling II | 10 | 7 | 1 |
| peptidoglycan biosynthesis I (meso-diaminopimelate containing) | 12 | 12 | 1 |
| peptidoglycan recycling I | 14 | 14 | 1 |
| peptidoglycan biosynthesis III (mycobacteria) | 15 | 11 | 1 |