Experiment set2S542 for Erwinia tracheiphila SCR3

Compare to:

Experiment:TE2, Cucumber 5 Main Stem (TE2-S-C5-MS)

200 most important genes:

  gene name fitness t score description  
LU632_RS15245 purE -6.6 -2.4 5-(carboxyamino)imidazole ribonucleotide mutase compare
LU632_RS23980 tatC -6.0 -9.9 Sec-independent protein translocase subunit TatC compare
LU632_RS25495 -5.8 -1.2 type II toxin-antitoxin system MqsA family antitoxin compare
LU632_RS07865 purF -5.7 -3.9 amidophosphoribosyltransferase compare
LU632_RS21755 -5.6 -3.8 adenylosuccinate synthase compare
LU632_RS15425 rpoE -5.5 -8.7 RNA polymerase sigma factor RpoE compare
LU632_RS08880 -5.5 -2.3 ABC transporter permease compare
LU632_RS08785 -5.3 -3.6 glycosyltransferase family 2 protein compare
LU632_RS09955 pyrD -5.2 -3.6 quinone-dependent dihydroorotate dehydrogenase compare
LU632_RS08815 -5.0 -3.0 colanic acid biosynthesis glycosyltransferase WcaL compare
LU632_RS21360 degS -4.8 -13.5 outer membrane-stress sensor serine endopeptidase DegS compare
LU632_RS08775 -4.8 -3.3 protein tyrosine phosphatase compare
LU632_RS08275 purM -4.8 -3.3 phosphoribosylformylglycinamidine cyclo-ligase compare
LU632_RS16110 sdhD -4.7 -9.0 succinate dehydrogenase membrane anchor subunit compare
LU632_RS06615 ptsI -4.7 -6.4 phosphoenolpyruvate-protein phosphotransferase PtsI compare
LU632_RS20950 pyrB -4.7 -3.2 aspartate carbamoyltransferase compare
LU632_RS02750 carB -4.5 -4.4 carbamoyl-phosphate synthase large subunit compare
LU632_RS08790 -4.5 -7.2 EpsG family protein compare
LU632_RS17975 purL -4.5 -8.1 phosphoribosylformylglycinamidine synthase compare
LU632_RS10340 pyrC -4.5 -3.1 dihydroorotase compare
LU632_RS16115 sdhC -4.4 -5.7 succinate dehydrogenase cytochrome b556 subunit compare
LU632_RS08780 wzc -4.4 -11.0 tyrosine-protein kinase Wzc compare
LU632_RS12500 pyrF -4.3 -3.0 orotidine-5'-phosphate decarboxylase compare
LU632_RS01015 purD -4.2 -2.9 phosphoribosylamine--glycine ligase compare
LU632_RS08820 -4.2 -2.9 lipopolysaccharide biosynthesis protein compare
LU632_RS08770 -4.1 -4.9 polysaccharide export protein compare
LU632_RS02100 -4.0 -12.9 hemolysin family protein compare
LU632_RS18875 -4.0 -0.8 IS256 family transposase compare
LU632_RS09475 mntR -3.9 -2.7 manganese-binding transcriptional regulator MntR compare
LU632_RS08885 -3.9 -5.2 ABC transporter ATP-binding protein compare
LU632_RS02755 carA -3.9 -8.9 glutamine-hydrolyzing carbamoyl-phosphate synthase small subunit compare
LU632_RS22140 glnL -3.8 -10.3 nitrogen regulation protein NR(II) compare
LU632_RS15250 purK -3.8 -3.7 5-(carboxyamino)imidazole ribonucleotide synthase compare
LU632_RS16100 -3.8 -3.4 succinate dehydrogenase iron-sulfur subunit compare
LU632_RS19610 argB -3.8 -4.0 acetylglutamate kinase compare
LU632_RS24155 -3.7 -2.2 class I adenylate cyclase compare
LU632_RS19930 rseP -3.7 -5.2 sigma E protease regulator RseP compare
LU632_RS16105 sdhA -3.7 -10.3 succinate dehydrogenase flavoprotein subunit compare
LU632_RS04600 -3.6 -1.1 hypothetical protein compare
LU632_RS03310 -3.6 -12.5 sucrose-6-phosphate hydrolase compare
LU632_RS13170 -3.6 -0.7 YoaH family protein compare
LU632_RS08800 -3.5 -1.6 glycosyltransferase compare
LU632_RS10270 -3.4 -1.7 glucan biosynthesis protein G compare
LU632_RS02140 -3.4 -2.7 ribosome-associated protein compare
LU632_RS08335 -3.3 -1.4 phosphoribosylaminoimidazolesuccinocarboxamide synthase compare
LU632_RS17615 -3.3 -3.6 YejL family protein compare
LU632_RS20780 -3.3 -0.7 hypothetical protein compare
LU632_RS22015 pyrE -3.3 -2.3 orotate phosphoribosyltransferase compare
LU632_RS16415 tatE -3.3 -0.7 twin-arginine translocase subunit TatE compare
LU632_RS18500 tgt -3.3 -2.2 tRNA guanosine(34) transglycosylase Tgt compare
LU632_RS13085 dsbB -3.2 -5.7 disulfide bond formation protein DsbB compare
LU632_RS21225 mlaB -3.2 -5.1 lipid asymmetry maintenance protein MlaB compare
LU632_RS19615 argC -3.2 -6.6 N-acetyl-gamma-glutamyl-phosphate reductase compare
LU632_RS06040 lysA -3.2 -11.1 diaminopimelate decarboxylase compare
LU632_RS08280 upp -3.2 -2.0 uracil phosphoribosyltransferase compare
LU632_RS22135 glnG -3.2 -8.1 nitrogen regulation protein NR(I) compare
LU632_RS22960 feoA -3.2 -0.7 ferrous iron transporter A compare
LU632_RS21240 mlaE -3.2 -4.9 lipid asymmetry maintenance ABC transporter permease subunit MlaE compare
LU632_RS19665 ftsN -3.1 -4.2 cell division protein FtsN compare
LU632_RS04250 yiaK -3.1 -3.7 3-dehydro-L-gulonate 2-dehydrogenase compare
LU632_RS15640 -3.1 -2.1 helix-turn-helix domain-containing protein compare
LU632_RS05510 speA -3.1 -1.5 biosynthetic arginine decarboxylase compare
LU632_RS11470 asr -3.0 -2.6 acid resistance repetitive basic protein Asr compare
LU632_RS09745 -3.0 -1.2 DNA translocase FtsK 4TM domain-containing protein compare
LU632_RS22810 -3.0 -11.0 aspartate aminotransferase family protein compare
LU632_RS16340 lptE -3.0 -1.5 LPS assembly lipoprotein LptE compare
LU632_RS02465 -3.0 -0.6 IS256 family transposase compare
LU632_RS21085 secG -3.0 -1.9 preprotein translocase subunit SecG compare
LU632_RS19585 sthA -2.9 -9.3 Si-specific NAD(P)(+) transhydrogenase compare
LU632_RS04835 -2.9 -1.8 TIGR03758 family integrating conjugative element protein compare
LU632_RS06745 -2.9 -1.6 transposase compare
LU632_RS01020 purH -2.8 -2.0 bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase compare
LU632_RS08000 nuoI -2.8 -4.0 NADH-quinone oxidoreductase subunit NuoI compare
LU632_RS05960 sdhE -2.8 -2.6 FAD assembly factor SdhE compare
LU632_RS02065 hflK -2.8 -2.8 FtsH protease activity modulator HflK compare
LU632_RS19275 ftsE -2.8 -5.8 cell division ATP-binding protein FtsE compare
LU632_RS18420 -2.8 -1.1 LysE family translocator compare
LU632_RS21245 mlaF -2.8 -8.9 phospholipid ABC transporter ATP-binding protein MlaF compare
LU632_RS21365 mdh -2.7 -5.5 malate dehydrogenase compare
LU632_RS00070 -2.7 -1.7 hypothetical protein compare
LU632_RS06635 zipA -2.7 -3.6 cell division protein ZipA compare
LU632_RS23985 tatB -2.7 -3.2 Sec-independent protein translocase protein TatB compare
LU632_RS15335 -2.7 -1.6 hypothetical protein compare
LU632_RS02070 hflC -2.7 -2.2 protease modulator HflC compare
LU632_RS10690 -2.6 -1.4 hypothetical protein compare
LU632_RS21875 gpsA -2.6 -8.7 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase compare
LU632_RS19620 argE -2.6 -4.8 acetylornithine deacetylase compare
LU632_RS16480 -2.6 -6.0 4-deoxy-4-formamido-L-arabinose- phosphoundecaprenol deformylase compare
LU632_RS06610 crr -2.6 -1.7 PTS glucose transporter subunit IIA compare
LU632_RS17420 -2.5 -1.3 phosphatidylinositol-specific phospholipase C domain-containing protein compare
LU632_RS19270 ftsX -2.5 -9.9 permease-like cell division protein FtsX compare
LU632_RS07740 -2.5 -1.8 phage transcriptional regulator compare
LU632_RS21235 mlaD -2.5 -6.7 outer membrane lipid asymmetry maintenance protein MlaD compare
LU632_RS08210 -2.5 -2.4 hypothetical protein compare
LU632_RS26120 -2.5 -2.6 WGR domain-containing protein compare
LU632_RS17205 -2.5 -1.2 Arc family DNA-binding protein compare
LU632_RS12520 -2.5 -2.7 lipopolysaccharide assembly protein LapA domain-containing protein compare
LU632_RS16120 -2.5 -14.0 citrate synthase compare
LU632_RS18585 -2.5 -1.3 DUF3251 domain-containing protein compare
LU632_RS26065 -2.4 -2.2 recombinase family protein compare
LU632_RS12910 -2.4 -1.6 NAD-dependent epimerase compare
LU632_RS24840 kup -2.4 -9.2 low affinity potassium transporter Kup compare
LU632_RS12925 rssB -2.4 -1.1 two-component system response regulator RssB compare
LU632_RS06905 -2.4 -0.9 excisionase compare
LU632_RS14345 -2.4 -1.9 hypothetical protein compare
LU632_RS14010 ldcA -2.4 -6.0 muramoyltetrapeptide carboxypeptidase compare
LU632_RS21880 secB -2.3 -3.7 protein-export chaperone SecB compare
LU632_RS21625 -2.3 -1.9 IS6 family transposase compare
LU632_RS25455 -2.3 -2.6 molybdopterin-guanine dinucleotide biosynthesis protein MobC compare
LU632_RS19980 glnD -2.3 -1.6 bifunctional uridylyltransferase/uridylyl-removing protein GlnD compare
LU632_RS16090 odhB -2.3 -1.0 2-oxoglutarate dehydrogenase complex dihydrolipoyllysine-residue succinyltransferase compare
LU632_RS04270 ulaD -2.3 -5.5 3-keto-L-gulonate-6-phosphate decarboxylase UlaD compare
LU632_RS08930 hisH -2.2 -6.9 imidazole glycerol phosphate synthase subunit HisH compare
LU632_RS02910 rsmH -2.2 -7.0 16S rRNA (cytosine(1402)-N(4))-methyltransferase RsmH compare
LU632_RS19450 pitA -2.2 -1.5 inorganic phosphate transporter PitA compare
LU632_RS12425 -2.2 -2.6 hypothetical protein compare
LU632_RS11245 slyB -2.2 -2.5 outer membrane lipoprotein SlyB compare
LU632_RS01895 -2.2 -2.0 ECN family pore-forming entericidin compare
LU632_RS03305 -2.2 -8.6 sucrose-specific PTS transporter subunit IIBC compare
LU632_RS09245 -2.2 -5.8 L,D-transpeptidase family protein compare
LU632_RS17820 ndk -2.2 -2.2 nucleoside-diphosphate kinase compare
LU632_RS23215 -2.2 -0.6 VirK/YbjX family protein compare
LU632_RS07775 aroC -2.1 -4.9 chorismate synthase compare
LU632_RS22940 ompR -2.1 -4.5 two-component system response regulator OmpR compare
LU632_RS09635 -2.1 -2.0 YbjN domain-containing protein compare
LU632_RS21930 -2.1 -7.7 glycosyltransferase compare
LU632_RS21260 kdsC -2.1 -4.7 3-deoxy-manno-octulosonate-8-phosphatase KdsC compare
LU632_RS07985 nuoF -2.1 -5.9 NADH-quinone oxidoreductase subunit NuoF compare
LU632_RS22150 typA -2.1 -1.4 ribosome-dependent GTPase TypA compare
LU632_RS08005 nuoJ -2.0 -5.2 NADH-quinone oxidoreductase subunit J compare
LU632_RS21230 mlaC -2.0 -4.2 phospholipid-binding protein MlaC compare
LU632_RS05225 -2.0 -2.1 hypothetical protein compare
LU632_RS08025 nuoN -2.0 -5.2 NADH-quinone oxidoreductase subunit NuoN compare
LU632_RS19960 -2.0 -1.0 hypothetical protein compare
LU632_RS26110 -2.0 -3.8 ParA family protein compare
LU632_RS21700 fklB -2.0 -1.4 peptidylprolyl isomerase compare
LU632_RS19600 argH -2.0 -7.8 argininosuccinate lyase compare
LU632_RS24250 wecA -2.0 -11.0 UDP-N-acetylglucosamine--undecaprenyl-phosphate N-acetylglucosaminephosphotransferase compare
LU632_RS02870 leuC -2.0 -7.9 3-isopropylmalate dehydratase large subunit compare
LU632_RS12440 -1.9 -1.7 carbonic anhydrase compare
LU632_RS21940 -1.9 -1.1 glycosyltransferase compare
LU632_RS22445 aroE -1.9 -3.2 shikimate dehydrogenase compare
LU632_RS14680 -1.9 -1.2 hypothetical protein compare
LU632_RS15905 galT -1.9 -4.0 galactose-1-phosphate uridylyltransferase compare
LU632_RS06825 -1.9 -0.9 hypothetical protein compare
LU632_RS02865 leuD -1.9 -6.3 3-isopropylmalate dehydratase small subunit compare
LU632_RS06410 -1.9 -1.1 phosphoadenylyl-sulfate reductase compare
LU632_RS04180 -1.9 -2.7 hypothetical protein compare
LU632_RS07995 nuoH -1.9 -4.1 NADH-quinone oxidoreductase subunit NuoH compare
LU632_RS24205 rffM -1.8 -5.6 lipopolysaccharide N-acetylmannosaminouronosyltransferase compare
LU632_RS12850 cls -1.8 -2.2 cardiolipin synthase compare
LU632_RS17320 fruK -1.8 -2.6 1-phosphofructokinase compare
LU632_RS20900 argF -1.8 -7.2 ornithine carbamoyltransferase compare
LU632_RS14735 -1.8 -4.0 glycine zipper 2TM domain-containing protein compare
LU632_RS00710 tssB -1.8 -4.0 type VI secretion system contractile sheath small subunit compare
LU632_RS09795 aroA -1.8 -8.3 3-phosphoshikimate 1-carboxyvinyltransferase compare
LU632_RS14125 -1.8 -2.2 hypothetical protein compare
LU632_RS07300 mlaA -1.8 -6.1 phospholipid-binding lipoprotein MlaA compare
LU632_RS02270 -1.8 -1.8 hypothetical protein compare
LU632_RS04255 -1.8 -3.2 YhcH/YjgK/YiaL family protein compare
LU632_RS04260 -1.8 -5.9 MFS transporter compare
LU632_RS13950 ychF -1.8 -2.5 redox-regulated ATPase YchF compare
LU632_RS03340 -1.8 -1.7 iron ABC transporter permease compare
LU632_RS07035 -1.8 -1.5 recombination protein NinB compare
LU632_RS04280 araD -1.8 -8.2 L-ribulose-5-phosphate 4-epimerase compare
LU632_RS18140 apt -1.8 -1.8 adenine phosphoribosyltransferase compare
LU632_RS18120 -1.7 -1.4 hypothetical protein compare
LU632_RS15620 -1.7 -1.2 DUF5347 domain-containing protein compare
LU632_RS03415 -1.7 -2.0 hypothetical protein compare
LU632_RS21250 -1.7 -3.1 calcium/sodium antiporter compare
LU632_RS26100 -1.7 -4.1 phage holin family protein compare
LU632_RS04265 -1.7 -6.8 carbohydrate kinase compare
LU632_RS21955 -1.7 -1.1 glycosyltransferase family 4 protein compare
LU632_RS22935 envZ -1.7 -6.3 two-component system sensor histidine kinase EnvZ compare
LU632_RS02875 leuB -1.7 -7.4 3-isopropylmalate dehydrogenase compare
LU632_RS21345 -1.7 -7.1 cell division protein ZapE compare
LU632_RS15690 gshA -1.7 -1.4 glutamate--cysteine ligase compare
LU632_RS14325 -1.7 -2.0 ERF family protein compare
LU632_RS04450 -1.7 -2.0 SprT-like domain-containing protein compare
LU632_RS14835 plsX -1.7 -2.5 phosphate acyltransferase PlsX compare
LU632_RS02880 leuA -1.6 -6.3 2-isopropylmalate synthase compare
LU632_RS20495 -1.6 -2.5 hypothetical protein compare
LU632_RS09985 pqiC -1.6 -4.7 membrane integrity-associated transporter subunit PqiC compare
LU632_RS00695 -1.6 -0.6 fimbria/pilus periplasmic chaperone compare
LU632_RS17315 fruA -1.6 -6.9 PTS fructose transporter subunit IIBC compare
LU632_RS23360 -1.6 -3.7 Sua5/YciO/YrdC/YwlC family protein compare
LU632_RS03300 -1.6 -8.0 carbohydrate porin compare
LU632_RS20800 -1.6 -1.9 hypothetical protein compare
LU632_RS06555 -1.6 -1.4 IS110 family transposase compare
LU632_RS25060 -1.6 -2.2 lysozyme compare
LU632_RS23330 -1.6 -2.3 dihydroxyacetone kinase subunit DhaK compare
LU632_RS10785 tagH -1.6 -10.2 type VI secretion system-associated FHA domain protein TagH compare
LU632_RS04205 -1.6 -0.7 hypothetical protein compare
LU632_RS06340 barA -1.6 -2.3 two-component sensor histidine kinase BarA compare
LU632_RS07970 -1.6 -7.4 NADH-quinone oxidoreductase subunit B compare
LU632_RS02110 -1.6 -8.7 translocation/assembly module TamB compare
LU632_RS16490 arnC -1.6 -8.3 undecaprenyl-phosphate 4-deoxy-4-formamido-L-arabinose transferase compare
LU632_RS06060 -1.6 -1.3 biotin/lipoyl-binding protein compare
LU632_RS24235 wecC -1.6 -3.6 UDP-N-acetyl-D-mannosamine dehydrogenase compare
LU632_RS08920 hisF -1.6 -3.2 imidazole glycerol phosphate synthase subunit HisF compare


Specific Phenotypes

None in this experiment

For Erwinia tracheiphila SCR3 in in planta experiments