Experiment set2S540 for Erwinia tracheiphila SCR3

Compare to:

Experiment:TE2, Cucumber 5 Petiole 1 (TE2-S-C5-P1)

200 most detrimental genes:

  gene name fitness t score description  
LU632_RS20620 cpdA +7.8 25.7 3',5'-cyclic-AMP phosphodiesterase compare
LU632_RS10510 rcsA +6.1 8.9 transcriptional regulator RcsA compare
LU632_RS08170 rcsC +4.3 29.3 two-component system sensor histidine kinase RcsC compare
LU632_RS06480 rpoS +4.2 18.0 RNA polymerase sigma factor RpoS compare
LU632_RS08180 rcsD +4.1 21.9 phosphotransferase RcsD compare
LU632_RS10450 +4.0 6.0 LysR family transcriptional regulator compare
LU632_RS03200 +3.9 8.4 sigma-54 dependent transcriptional regulator compare
LU632_RS19580 fabR +3.8 7.1 HTH-type transcriptional repressor FabR compare
LU632_RS22245 +3.7 9.2 hypothetical protein compare
LU632_RS20625 +3.2 4.9 DUF1249 family protein compare
LU632_RS25570 +3.2 9.0 ribbon-helix-helix domain-containing protein compare
LU632_RS02815 +3.1 3.2 transposase compare
LU632_RS21515 fis +2.9 8.1 DNA-binding transcriptional regulator Fis compare
LU632_RS13340 +2.9 3.5 hypothetical protein compare
LU632_RS00435 sctF +2.8 2.1 type III secretion system needle filament subunit SctF compare
LU632_RS03330 +2.8 14.2 LacI family DNA-binding transcriptional regulator compare
LU632_RS03190 +2.8 12.5 PAS domain-containing sensor histidine kinase compare
LU632_RS01070 +2.6 11.2 endonuclease/exonuclease/phosphatase family protein compare
LU632_RS08765 wbaP +2.6 10.4 undecaprenyl-phosphate galactose phosphotransferase WbaP compare
LU632_RS06110 ptsP +2.6 14.1 phosphoenolpyruvate--protein phosphotransferase compare
LU632_RS00835 +2.5 7.6 DeoR/GlpR family DNA-binding transcription regulator compare
LU632_RS03195 +2.5 8.1 response regulator transcription factor compare
LU632_RS01465 +2.5 2.0 hypothetical protein compare
LU632_RS20090 pcnB +2.4 5.1 polynucleotide adenylyltransferase PcnB compare
LU632_RS05395 +2.4 4.3 TetR/AcrR family transcriptional regulator compare
LU632_RS00115 +2.4 7.6 acyltransferase compare
LU632_RS10180 +2.3 2.3 autoinducer synthase compare
LU632_RS09010 +2.3 2.2 DnaJ domain-containing protein compare
LU632_RS00135 +2.3 1.8 YibL family ribosome-associated protein compare
LU632_RS22715 fkpA +2.3 5.9 FKBP-type peptidyl-prolyl cis-trans isomerase compare
LU632_RS03185 +2.1 3.1 sigma-70 family RNA polymerase sigma factor compare
LU632_RS08825 galF +2.1 7.8 UTP--glucose-1-phosphate uridylyltransferase GalF compare
LU632_RS13480 cutC +2.0 7.6 copper homeostasis protein CutC compare
LU632_RS21510 dusB +2.0 7.1 tRNA dihydrouridine synthase DusB compare
LU632_RS13255 proQ +2.0 3.0 RNA chaperone ProQ compare
LU632_RS21300 npr +1.9 5.4 PTS phosphocarrier protein NPr compare
LU632_RS01170 crl +1.9 2.7 sigma factor-binding protein Crl compare
LU632_RS08425 +1.9 5.1 Rpn family recombination-promoting nuclease/putative transposase compare
LU632_RS05130 +1.9 1.7 TIGR03750 family conjugal transfer protein compare
LU632_RS21740 +1.8 2.3 hypothetical protein compare
LU632_RS01790 +1.8 1.6 hypothetical protein compare
LU632_RS03295 +1.8 4.3 aminoimidazole riboside kinase compare
LU632_RS12575 +1.8 2.6 hypothetical protein compare
LU632_RS13210 cspE +1.8 3.0 transcription antiterminator/RNA stability regulator CspE compare
LU632_RS14340 +1.7 1.9 hypothetical protein compare
LU632_RS22790 +1.7 6.8 phosphoribulokinase compare
LU632_RS10660 +1.7 1.5 hypothetical protein compare
LU632_RS07005 +1.7 1.6 helix-turn-helix transcriptional regulator compare
LU632_RS22170 fabY +1.7 5.8 fatty acid biosynthesis protein FabY compare
LU632_RS11355 +1.7 1.1 hypothetical protein compare
LU632_RS12430 +1.6 1.1 DUF3164 family protein compare
LU632_RS15800 +1.6 2.6 hypothetical protein compare
LU632_RS03325 +1.6 6.0 hypothetical protein compare
LU632_RS13445 +1.6 1.9 DUF72 domain-containing protein compare
LU632_RS03615 +1.6 2.6 phage virion morphogenesis protein compare
LU632_RS08450 +1.5 3.3 serine-type D-Ala-D-Ala carboxypeptidase compare
LU632_RS12350 +1.5 0.9 adenosine deaminase compare
LU632_RS19385 +1.5 1.9 DUF3486 family protein compare
LU632_RS17015 +1.4 1.5 RnfH family protein compare
LU632_RS12110 +1.4 2.4 type II secretion system protein GspD compare
LU632_RS24435 +1.4 1.9 DDE-type integrase/transposase/recombinase compare
LU632_RS20100 panB +1.4 3.3 3-methyl-2-oxobutanoate hydroxymethyltransferase compare
LU632_RS07685 +1.4 0.9 helix-turn-helix domain-containing protein compare
LU632_RS08485 +1.4 1.6 antitermination protein compare
LU632_RS08580 +1.4 1.9 hypothetical protein compare
LU632_RS19260 panM +1.4 2.0 aspartate 1-decarboxylase autocleavage activator PanM compare
LU632_RS21350 +1.4 3.0 DUF1043 family protein compare
LU632_RS23875 dsbA +1.4 2.0 thiol:disulfide interchange protein DsbA compare
LU632_RS18475 +1.3 1.2 peroxiredoxin C compare
LU632_RS08395 +1.3 1.5 LacI family DNA-binding transcriptional regulator compare
LU632_RS12305 +1.3 6.6 ROK family transcriptional regulator compare
LU632_RS18430 +1.3 4.3 LysR substrate-binding domain-containing protein compare
LU632_RS10985 +1.3 1.3 diguanylate cyclase compare
LU632_RS25645 pilP +1.3 2.7 type IV pilus biogenesis protein PilP compare
LU632_RS14215 +1.3 1.4 recombination protein NinB compare
LU632_RS20930 +1.3 1.2 hypothetical protein compare
LU632_RS03440 +1.2 2.4 single-stranded DNA-binding protein compare
LU632_RS20615 yqiA +1.2 5.1 esterase YqiA compare
LU632_RS02580 trpR +1.2 1.3 trp operon repressor compare
LU632_RS25620 +1.2 3.1 hypothetical protein compare
LU632_RS19130 +1.2 2.0 transposase compare
LU632_RS16135 pxpA +1.2 1.3 5-oxoprolinase subunit PxpA compare
LU632_RS03115 +1.2 1.3 hypothetical protein compare
LU632_RS23250 soxS +1.2 3.7 superoxide response transcriptional regulator SoxS compare
LU632_RS08630 +1.2 1.5 transposase compare
LU632_RS22200 spoT +1.2 2.0 bifunctional GTP diphosphokinase/guanosine-3',5'-bis pyrophosphate 3'-pyrophosphohydrolase compare
LU632_RS16255 +1.2 7.5 ROK family transcriptional regulator compare
LU632_RS00100 +1.2 3.0 DeoR/GlpR family DNA-binding transcription regulator compare
LU632_RS20810 +1.2 1.7 DUF6387 family protein compare
LU632_RS10990 +1.2 6.4 sensor domain-containing phosphodiesterase compare
LU632_RS08890 gndA +1.2 2.1 NADP-dependent phosphogluconate dehydrogenase compare
LU632_RS04030 +1.2 3.6 DUF6516 family protein compare
LU632_RS06145 +1.1 5.2 sulfotransferase compare
LU632_RS05025 +1.1 0.7 TIGR03749 family integrating conjugative element protein compare
LU632_RS09195 moaE +1.1 0.9 molybdopterin synthase catalytic subunit MoaE compare
LU632_RS07625 +1.1 2.0 hypothetical protein compare
LU632_RS14895 +1.1 2.5 integrase arm-type DNA-binding domain-containing protein compare
LU632_RS16680 +1.1 1.0 hypothetical protein compare
LU632_RS00975 +1.1 3.5 Rsd/AlgQ family anti-sigma factor compare
LU632_RS06150 +1.1 3.4 TauD/TfdA family dioxygenase compare
LU632_RS09460 dps +1.1 1.7 DNA starvation/stationary phase protection protein Dps compare
LU632_RS16560 +1.1 0.7 hypothetical protein compare
LU632_RS20995 +1.1 1.9 N-acetyltransferase compare
LU632_RS14720 +1.1 2.0 integrase compare
LU632_RS06550 +1.1 2.5 putative DNA-binding transcriptional regulator compare
LU632_RS12085 +1.1 1.7 hypothetical protein compare
LU632_RS06690 cysT +1.1 2.0 sulfate/thiosulfate ABC transporter permease CysT compare
LU632_RS00800 kdpD +1.1 4.2 two-component system sensor histidine kinase KdpD compare
LU632_RS22230 +1.1 5.7 helix-turn-helix domain-containing protein compare
LU632_RS00960 +1.1 1.7 HesA/MoeB/ThiF family protein compare
LU632_RS07560 +1.0 1.4 phage major tail tube protein compare
LU632_RS05195 +1.0 1.4 hypothetical protein compare
LU632_RS19100 +1.0 1.3 hypothetical protein compare
LU632_RS18970 +1.0 1.3 YaiA family protein compare
LU632_RS10170 +1.0 1.1 autoinducer binding domain-containing protein compare
LU632_RS01995 +1.0 1.0 type VI secretion system tube protein Hcp compare
LU632_RS14280 +1.0 2.4 hypothetical protein compare
LU632_RS06270 xni +1.0 3.5 flap endonuclease Xni compare
LU632_RS22970 +1.0 2.2 DUF1471 domain-containing protein compare
LU632_RS06860 +1.0 2.0 hypothetical protein compare
LU632_RS24925 +1.0 2.5 hypothetical protein compare
LU632_RS05970 fldB +1.0 1.6 flavodoxin FldB compare
LU632_RS15475 +1.0 1.7 hypothetical protein compare
LU632_RS23505 +1.0 1.1 IS256 family transposase compare
LU632_RS24520 +1.0 1.9 replicase compare
LU632_RS14745 +1.0 0.7 IS5 family transposase compare
LU632_RS00465 +1.0 1.2 type III secretion system protein compare
LU632_RS02150 cybC +1.0 0.9 cytochrome b562 compare
LU632_RS04455 +1.0 1.8 antirestriction protein ArdR compare
LU632_RS17035 +1.0 0.7 DinI family protein compare
LU632_RS20225 +1.0 2.0 IS1 family transposase compare
LU632_RS15830 +1.0 0.8 Arm DNA-binding domain-containing protein compare
LU632_RS09330 +1.0 4.1 oxygenase MpaB family protein compare
LU632_RS03905 +1.0 1.7 DUF1795 domain-containing protein compare
LU632_RS23970 rfaH +1.0 3.5 transcription/translation regulatory transformer protein RfaH compare
LU632_RS25770 +1.0 1.8 relaxosome protein TraM compare
LU632_RS22155 yihX +1.0 2.6 glucose-1-phosphatase compare
LU632_RS06155 +1.0 2.0 SDR family oxidoreductase compare
LU632_RS11545 pspD +1.0 2.8 phage shock protein PspD compare
LU632_RS07260 +1.0 3.0 hypothetical protein compare
LU632_RS19815 gmhB +1.0 0.7 D-glycero-beta-D-manno-heptose 1,7-bisphosphate 7-phosphatase compare
LU632_RS03995 +1.0 0.9 hypothetical protein compare
LU632_RS04055 +1.0 1.9 GntR family transcriptional regulator compare
LU632_RS21750 rnr +1.0 4.3 ribonuclease R compare
LU632_RS17390 +1.0 2.2 DUF3102 domain-containing protein compare
LU632_RS16665 +1.0 0.8 hypothetical protein compare
LU632_RS01495 +1.0 3.7 hypothetical protein compare
LU632_RS04135 +1.0 0.8 toxin compare
LU632_RS04630 +1.0 0.9 hypothetical protein compare
LU632_RS00705 +1.0 3.1 type 1 fimbrial protein compare
LU632_RS17650 +0.9 0.9 hypothetical protein compare
LU632_RS00825 +0.9 3.1 ROK family protein compare
LU632_RS05400 +0.9 3.1 Tm-1-like ATP-binding domain-containing protein compare
LU632_RS09520 +0.9 2.1 hypothetical protein compare
LU632_RS23625 +0.9 1.7 IS91 family transposase compare
LU632_RS03590 +0.9 0.9 phage holin family protein compare
LU632_RS03370 +0.9 0.8 integrase compare
LU632_RS18615 pgpA +0.9 2.6 phosphatidylglycerophosphatase A compare
LU632_RS18425 +0.9 3.6 YqcI/YcgG family protein compare
LU632_RS16875 trxC +0.9 2.2 thioredoxin TrxC compare
LU632_RS21055 rbfA +0.9 0.7 30S ribosome-binding factor RbfA compare
LU632_RS07570 +0.9 1.0 hypothetical protein compare
LU632_RS08670 baeR +0.9 1.9 two-component system response regulator BaeR compare
LU632_RS07705 +0.9 1.8 hypothetical protein compare
LU632_RS15630 +0.9 1.3 hypothetical protein compare
LU632_RS17070 +0.9 1.6 tail fiber assembly protein compare
LU632_RS03495 +0.9 1.1 phage regulatory CII family protein compare
LU632_RS22785 +0.9 1.6 YheU family protein compare
LU632_RS05125 +0.9 0.9 TIGR03745 family integrating conjugative element membrane protein compare
LU632_RS18260 +0.9 3.3 YbaY family lipoprotein compare
LU632_RS00455 sctW +0.9 1.6 type III secretion system gatekeeper subunit SctW compare
LU632_RS11875 +0.9 2.2 hypothetical protein compare
LU632_RS23785 +0.9 2.1 hypothetical protein compare
LU632_RS05900 +0.9 1.5 hypothetical protein compare
LU632_RS01360 +0.9 3.1 YhgN family NAAT transporter compare
LU632_RS20985 +0.8 1.4 YhbP family protein compare
LU632_RS12740 +0.8 4.4 glycosyltransferase compare
LU632_RS18850 +0.8 2.7 hypothetical protein compare
LU632_RS06100 +0.8 0.6 hypothetical protein compare
LU632_RS03525 +0.8 1.6 DUF5405 family protein compare
LU632_RS15110 +0.8 1.3 hypothetical protein compare
LU632_RS25410 +0.8 1.1 type II toxin-antitoxin system RelE/ParE family toxin compare
LU632_RS01770 +0.8 2.0 hypothetical protein compare
LU632_RS12485 tnpA +0.8 0.9 IS200/IS605 family transposase compare
LU632_RS17595 rsuA +0.8 3.5 16S rRNA pseudouridine(516) synthase RsuA compare
LU632_RS04290 +0.8 1.4 hypothetical protein compare
LU632_RS10005 matP +0.8 2.9 macrodomain Ter protein MatP compare
LU632_RS13610 +0.8 1.6 glutamine amidotransferase compare
LU632_RS03710 +0.8 1.2 YbaK/EbsC family protein compare
LU632_RS21050 truB +0.8 2.4 tRNA pseudouridine(55) synthase TruB compare
LU632_RS17120 +0.8 1.5 phage tail tube protein compare
LU632_RS01575 +0.8 1.8 hypothetical protein compare
LU632_RS14130 vsr +0.8 1.5 DNA mismatch endonuclease Vsr compare
LU632_RS16210 +0.8 1.4 hypothetical protein compare
LU632_RS06355 +0.8 2.1 hypothetical protein compare
LU632_RS07640 +0.8 2.8 transglycosylase SLT domain-containing protein compare
LU632_RS08290 uraA +0.8 2.2 uracil permease compare
LU632_RS02735 apaG +0.8 2.4 Co2+/Mg2+ efflux protein ApaG compare
LU632_RS20285 +0.8 1.4 hypothetical protein compare
LU632_RS07285 +0.8 1.1 DinI family protein compare


Specific Phenotypes

For 1 genes in this experiment