Experiment set2S536 for Erwinia tracheiphila SCR3

Compare to:

Experiment:TE2, Cucumber 4 Main Stem (TE2-S-C4-MS)

200 most important genes:

  gene name fitness t score description  
LU632_RS23980 tatC -6.2 -4.3 Sec-independent protein translocase subunit TatC compare
LU632_RS15245 purE -5.9 -2.0 5-(carboxyamino)imidazole ribonucleotide mutase compare
LU632_RS17820 ndk -5.0 -1.7 nucleoside-diphosphate kinase compare
LU632_RS08885 -5.0 -4.2 ABC transporter ATP-binding protein compare
LU632_RS07865 purF -4.9 -6.7 amidophosphoribosyltransferase compare
LU632_RS15425 rpoE -4.7 -7.5 RNA polymerase sigma factor RpoE compare
LU632_RS16115 sdhC -4.6 -3.9 succinate dehydrogenase cytochrome b556 subunit compare
LU632_RS08785 -4.6 -3.2 glycosyltransferase family 2 protein compare
LU632_RS09955 pyrD -4.5 -3.1 quinone-dependent dihydroorotate dehydrogenase compare
LU632_RS08815 -4.3 -2.4 colanic acid biosynthesis glycosyltransferase WcaL compare
LU632_RS02865 leuD -4.3 -5.6 3-isopropylmalate dehydratase small subunit compare
LU632_RS16110 sdhD -4.3 -5.1 succinate dehydrogenase membrane anchor subunit compare
LU632_RS09475 mntR -4.2 -1.8 manganese-binding transcriptional regulator MntR compare
LU632_RS02755 carA -4.2 -5.0 glutamine-hydrolyzing carbamoyl-phosphate synthase small subunit compare
LU632_RS06615 ptsI -4.2 -5.0 phosphoenolpyruvate-protein phosphotransferase PtsI compare
LU632_RS02100 -4.2 -9.7 hemolysin family protein compare
LU632_RS08775 -4.1 -2.8 protein tyrosine phosphatase compare
LU632_RS08275 purM -4.1 -2.8 phosphoribosylformylglycinamidine cyclo-ligase compare
LU632_RS25545 -4.0 -1.1 helix-turn-helix domain-containing protein compare
LU632_RS04250 yiaK -4.0 -3.4 3-dehydro-L-gulonate 2-dehydrogenase compare
LU632_RS21755 -4.0 -10.9 adenylosuccinate synthase compare
LU632_RS20950 pyrB -3.9 -3.8 aspartate carbamoyltransferase compare
LU632_RS17975 purL -3.9 -5.4 phosphoribosylformylglycinamidine synthase compare
LU632_RS08790 -3.9 -4.4 EpsG family protein compare
LU632_RS22140 glnL -3.9 -10.0 nitrogen regulation protein NR(II) compare
LU632_RS21240 mlaE -3.9 -3.9 lipid asymmetry maintenance ABC transporter permease subunit MlaE compare
LU632_RS02750 carB -3.8 -2.6 carbamoyl-phosphate synthase large subunit compare
LU632_RS21360 degS -3.7 -10.2 outer membrane-stress sensor serine endopeptidase DegS compare
LU632_RS08925 hisA -3.7 -1.6 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino]imidazole-4- carboxamide isomerase compare
LU632_RS10340 pyrC -3.7 -2.5 dihydroorotase compare
LU632_RS17420 -3.7 -1.0 phosphatidylinositol-specific phospholipase C domain-containing protein compare
LU632_RS07775 aroC -3.7 -4.1 chorismate synthase compare
LU632_RS08880 -3.7 -2.3 ABC transporter permease compare
LU632_RS02875 leuB -3.6 -8.4 3-isopropylmalate dehydrogenase compare
LU632_RS13085 dsbB -3.6 -4.9 disulfide bond formation protein DsbB compare
LU632_RS24155 -3.6 -1.4 class I adenylate cyclase compare
LU632_RS23445 -3.5 -1.0 ProQ/FinO family protein compare
LU632_RS12710 -3.5 -0.7 DUF2498 family protein compare
LU632_RS08820 -3.5 -2.4 lipopolysaccharide biosynthesis protein compare
LU632_RS08770 -3.5 -3.4 polysaccharide export protein compare
LU632_RS16100 -3.4 -2.1 succinate dehydrogenase iron-sulfur subunit compare
LU632_RS08780 wzc -3.4 -8.9 tyrosine-protein kinase Wzc compare
LU632_RS05960 sdhE -3.4 -2.1 FAD assembly factor SdhE compare
LU632_RS02140 -3.4 -1.3 ribosome-associated protein compare
LU632_RS19615 argC -3.3 -6.3 N-acetyl-gamma-glutamyl-phosphate reductase compare
LU632_RS21675 -3.3 -0.7 hypothetical protein compare
LU632_RS02870 leuC -3.3 -10.0 3-isopropylmalate dehydratase large subunit compare
LU632_RS21225 mlaB -3.3 -3.4 lipid asymmetry maintenance protein MlaB compare
LU632_RS22135 glnG -3.3 -6.5 nitrogen regulation protein NR(I) compare
LU632_RS15250 purK -3.2 -2.2 5-(carboxyamino)imidazole ribonucleotide synthase compare
LU632_RS22810 -3.2 -8.3 aspartate aminotransferase family protein compare
LU632_RS21955 -3.2 -1.1 glycosyltransferase family 4 protein compare
LU632_RS11790 -3.1 -0.9 DUF2313 domain-containing protein compare
LU632_RS16105 sdhA -3.1 -5.1 succinate dehydrogenase flavoprotein subunit compare
LU632_RS04710 -3.0 -0.6 IS110 family transposase compare
LU632_RS19930 rseP -2.9 -2.6 sigma E protease regulator RseP compare
LU632_RS12500 pyrF -2.9 -4.6 orotidine-5'-phosphate decarboxylase compare
LU632_RS19585 sthA -2.9 -9.7 Si-specific NAD(P)(+) transhydrogenase compare
LU632_RS03310 -2.9 -12.3 sucrose-6-phosphate hydrolase compare
LU632_RS08800 -2.9 -1.2 glycosyltransferase compare
LU632_RS16415 tatE -2.8 -0.5 twin-arginine translocase subunit TatE compare
LU632_RS21235 mlaD -2.8 -5.9 outer membrane lipid asymmetry maintenance protein MlaD compare
LU632_RS25495 -2.8 -1.2 type II toxin-antitoxin system MqsA family antitoxin compare
LU632_RS17745 -2.8 -2.8 IS481 family transposase compare
LU632_RS13465 -2.8 -2.6 cytochrome B compare
LU632_RS21365 mdh -2.7 -4.0 malate dehydrogenase compare
LU632_RS07950 yfbR -2.7 -4.6 5'-deoxynucleotidase compare
LU632_RS04255 -2.7 -2.6 YhcH/YjgK/YiaL family protein compare
LU632_RS16565 -2.7 -1.3 hypothetical protein compare
LU632_RS18985 -2.7 -3.3 YaiI/YqxD family protein compare
LU632_RS16120 -2.7 -12.4 citrate synthase compare
LU632_RS24405 -2.7 -10.1 branched-chain amino acid transaminase compare
LU632_RS08335 -2.7 -1.0 phosphoribosylaminoimidazolesuccinocarboxamide synthase compare
LU632_RS10270 -2.7 -1.2 glucan biosynthesis protein G compare
LU632_RS20790 -2.6 -0.7 tyrosine-type recombinase/integrase compare
LU632_RS17115 -2.6 -1.8 phage tail assembly protein compare
LU632_RS04305 -2.6 -0.7 DNA primase compare
LU632_RS01090 rnhA -2.6 -1.0 ribonuclease HI compare
LU632_RS22015 pyrE -2.6 -1.8 orotate phosphoribosyltransferase compare
LU632_RS18500 tgt -2.5 -2.4 tRNA guanosine(34) transglycosylase Tgt compare
LU632_RS17830 -2.5 -1.3 MgtC/SapB family protein compare
LU632_RS15860 istB -2.5 -1.5 IS21-like element helper ATPase IstB compare
LU632_RS19600 argH -2.5 -11.9 argininosuccinate lyase compare
LU632_RS13930 -2.5 -1.2 transposase compare
LU632_RS09795 aroA -2.4 -9.8 3-phosphoshikimate 1-carboxyvinyltransferase compare
LU632_RS24105 -2.4 -0.7 thioesterase family protein compare
LU632_RS16135 pxpA -2.4 -2.3 5-oxoprolinase subunit PxpA compare
LU632_RS08920 hisF -2.4 -6.0 imidazole glycerol phosphate synthase subunit HisF compare
LU632_RS14835 plsX -2.4 -4.3 phosphate acyltransferase PlsX compare
LU632_RS08945 hisD -2.4 -5.6 histidinol dehydrogenase compare
LU632_RS23340 -2.4 -0.5 dihydroxyacetone kinase subunit L compare
LU632_RS02880 leuA -2.4 -9.9 2-isopropylmalate synthase compare
LU632_RS11980 -2.4 -2.0 IS1 family transposase compare
LU632_RS18585 -2.4 -0.8 DUF3251 domain-containing protein compare
LU632_RS06210 argA -2.4 -5.8 amino-acid N-acetyltransferase compare
LU632_RS22940 ompR -2.4 -4.2 two-component system response regulator OmpR compare
LU632_RS08930 hisH -2.4 -6.2 imidazole glycerol phosphate synthase subunit HisH compare
LU632_RS17615 -2.4 -2.9 YejL family protein compare
LU632_RS25030 -2.3 -0.8 hypothetical protein compare
LU632_RS02910 rsmH -2.3 -5.8 16S rRNA (cytosine(1402)-N(4))-methyltransferase RsmH compare
LU632_RS15640 -2.3 -1.6 helix-turn-helix domain-containing protein compare
LU632_RS08865 rfbC -2.3 -8.6 dTDP-4-dehydrorhamnose 3,5-epimerase compare
LU632_RS04810 -2.3 -0.6 hypothetical protein compare
LU632_RS09085 pgl -2.3 -1.2 6-phosphogluconolactonase compare
LU632_RS14215 -2.2 -0.9 recombination protein NinB compare
LU632_RS08210 -2.2 -1.6 hypothetical protein compare
LU632_RS26120 -2.2 -1.9 WGR domain-containing protein compare
LU632_RS19275 ftsE -2.2 -3.0 cell division ATP-binding protein FtsE compare
LU632_RS09245 -2.2 -4.2 L,D-transpeptidase family protein compare
LU632_RS06585 -2.2 -0.6 FlxA-like family protein compare
LU632_RS20900 argF -2.2 -8.1 ornithine carbamoyltransferase compare
LU632_RS03630 -2.2 -1.7 baseplate assembly protein compare
LU632_RS21245 mlaF -2.2 -6.6 phospholipid ABC transporter ATP-binding protein MlaF compare
LU632_RS02070 hflC -2.1 -1.2 protease modulator HflC compare
LU632_RS25620 -2.1 -2.5 hypothetical protein compare
LU632_RS17325 fruB -2.1 -7.1 fused PTS fructose transporter subunit IIA/HPr protein compare
LU632_RS19270 ftsX -2.1 -7.3 permease-like cell division protein FtsX compare
LU632_RS16285 -2.1 -1.1 tRNA-Met compare
LU632_RS23985 tatB -2.1 -3.6 Sec-independent protein translocase protein TatB compare
LU632_RS16880 -2.1 -0.7 DTW domain-containing protein compare
LU632_RS19610 argB -2.1 -1.9 acetylglutamate kinase compare
LU632_RS04135 -2.1 -0.6 toxin compare
LU632_RS15395 lepA -2.1 -3.8 translation elongation factor 4 compare
LU632_RS04280 araD -2.0 -8.8 L-ribulose-5-phosphate 4-epimerase compare
LU632_RS08915 hisIE -2.0 -3.4 bifunctional phosphoribosyl-AMP cyclohydrolase/phosphoribosyl-ATP diphosphatase HisIE compare
LU632_RS19440 -2.0 -1.4 IS5 family transposase compare
LU632_RS03305 -2.0 -7.8 sucrose-specific PTS transporter subunit IIBC compare
LU632_RS02150 cybC -2.0 -1.4 cytochrome b562 compare
LU632_RS01180 -2.0 -0.8 hypothetical protein compare
LU632_RS06040 lysA -2.0 -6.0 diaminopimelate decarboxylase compare
LU632_RS00745 -2.0 -0.5 hypothetical protein compare
LU632_RS02610 thrA -2.0 -5.4 bifunctional aspartate kinase/homoserine dehydrogenase I compare
LU632_RS06185 ptrA -2.0 -3.7 pitrilysin compare
LU632_RS25645 pilP -1.9 -1.7 type IV pilus biogenesis protein PilP compare
LU632_RS06525 -1.9 -4.6 Nramp family divalent metal transporter compare
LU632_RS20930 -1.9 -0.5 hypothetical protein compare
LU632_RS15905 galT -1.9 -4.1 galactose-1-phosphate uridylyltransferase compare
LU632_RS19665 ftsN -1.9 -2.7 cell division protein FtsN compare
LU632_RS12275 -1.9 -1.3 DUF1161 domain-containing protein compare
LU632_RS08000 nuoI -1.9 -3.3 NADH-quinone oxidoreductase subunit NuoI compare
LU632_RS19015 cspA -1.9 -0.9 RNA chaperone/antiterminator CspA compare
LU632_RS08855 rfbD -1.9 -7.4 dTDP-4-dehydrorhamnose reductase compare
LU632_RS05250 -1.9 -1.8 hypothetical protein compare
LU632_RS07965 -1.9 -4.7 NADH-quinone oxidoreductase subunit A compare
LU632_RS17320 fruK -1.9 -3.5 1-phosphofructokinase compare
LU632_RS03335 -1.9 -1.0 ABC transporter ATP-binding protein compare
LU632_RS12730 rluB -1.9 -6.3 23S rRNA pseudouridine(2605) synthase RluB compare
LU632_RS17205 -1.9 -0.9 Arc family DNA-binding protein compare
LU632_RS08020 nuoM -1.9 -5.2 NADH-quinone oxidoreductase subunit M compare
LU632_RS00760 -1.9 -3.5 TagK domain-containing protein compare
LU632_RS24645 -1.9 -2.0 IS630 family transposase compare
LU632_RS08935 hisB -1.8 -6.0 bifunctional histidinol-phosphatase/imidazoleglycerol-phosphate dehydratase HisB compare
LU632_RS09745 -1.8 -1.4 DNA translocase FtsK 4TM domain-containing protein compare
LU632_RS12850 cls -1.8 -1.1 cardiolipin synthase compare
LU632_RS20590 -1.8 -1.4 antibiotic biosynthesis monooxygenase compare
LU632_RS14745 -1.8 -0.6 IS5 family transposase compare
LU632_RS10660 -1.8 -0.7 hypothetical protein compare
LU632_RS13170 -1.8 -0.6 YoaH family protein compare
LU632_RS05950 -1.8 -3.1 hemolysin III family protein compare
LU632_RS12705 -1.8 -1.6 IS630 family transposase compare
LU632_RS24250 wecA -1.8 -7.2 UDP-N-acetylglucosamine--undecaprenyl-phosphate N-acetylglucosaminephosphotransferase compare
LU632_RS20695 bacA -1.8 -2.7 undecaprenyl-diphosphate phosphatase compare
LU632_RS01020 purH -1.8 -1.2 bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase compare
LU632_RS24150 -1.8 -0.9 lipoprotein compare
LU632_RS01015 purD -1.8 -3.2 phosphoribosylamine--glycine ligase compare
LU632_RS00220 -1.8 -6.2 family 10 glycosylhydrolase compare
LU632_RS23360 -1.8 -3.5 Sua5/YciO/YrdC/YwlC family protein compare
LU632_RS24840 kup -1.8 -7.3 low affinity potassium transporter Kup compare
LU632_RS23085 -1.7 -2.0 DUF5993 family protein compare
LU632_RS19815 gmhB -1.7 -0.6 D-glycero-beta-D-manno-heptose 1,7-bisphosphate 7-phosphatase compare
LU632_RS18995 proC -1.7 -2.2 pyrroline-5-carboxylate reductase compare
LU632_RS06410 -1.7 -0.7 phosphoadenylyl-sulfate reductase compare
LU632_RS07995 nuoH -1.7 -3.7 NADH-quinone oxidoreductase subunit NuoH compare
LU632_RS07300 mlaA -1.7 -5.6 phospholipid-binding lipoprotein MlaA compare
LU632_RS08005 nuoJ -1.7 -4.3 NADH-quinone oxidoreductase subunit J compare
LU632_RS13500 -1.7 -1.6 flagellar protein FlhE compare
LU632_RS05475 -1.7 -2.6 YqgE/AlgH family protein compare
LU632_RS00410 -1.7 -2.7 hypothetical protein compare
LU632_RS21895 envC -1.7 -6.9 murein hydrolase activator EnvC compare
LU632_RS03535 -1.7 -2.6 DinI family protein compare
LU632_RS04450 -1.7 -1.6 SprT-like domain-containing protein compare
LU632_RS21260 kdsC -1.7 -3.0 3-deoxy-manno-octulosonate-8-phosphatase KdsC compare
LU632_RS08620 -1.7 -2.1 IS6 family transposase compare
LU632_RS03735 -1.7 -1.6 DUF1435 domain-containing protein compare
LU632_RS21700 fklB -1.7 -1.0 peptidylprolyl isomerase compare
LU632_RS12940 purU -1.6 -9.9 formyltetrahydrofolate deformylase compare
LU632_RS12270 -1.6 -1.5 DUF1283 family protein compare
LU632_RS17315 fruA -1.6 -7.8 PTS fructose transporter subunit IIBC compare
LU632_RS24235 wecC -1.6 -3.1 UDP-N-acetyl-D-mannosamine dehydrogenase compare
LU632_RS08500 -1.6 -0.7 transposase compare
LU632_RS13370 pyk -1.6 -6.0 pyruvate kinase compare
LU632_RS11750 -1.6 -2.1 acyltransferase compare
LU632_RS19160 gntR -1.6 -2.3 gluconate operon transcriptional repressor GntR compare
LU632_RS08950 hisG -1.6 -5.2 ATP phosphoribosyltransferase compare
LU632_RS24385 ilvC -1.6 -4.3 ketol-acid reductoisomerase compare
LU632_RS09675 artQ -1.6 -1.9 arginine ABC transporter permease ArtQ compare
LU632_RS18420 -1.6 -0.9 LysE family translocator compare
LU632_RS22935 envZ -1.6 -4.4 two-component system sensor histidine kinase EnvZ compare
LU632_RS03500 -1.6 -1.0 DUF2724 domain-containing protein compare
LU632_RS24320 -1.6 -1.7 type II toxin-antitoxin system RelE/ParE family toxin compare


Specific Phenotypes

For 1 genes in this experiment