Experiment set2S534 for Erwinia tracheiphila SCR3

Compare to:

Experiment:TE2, Cucumber 4 Petiole 1 (TE2-S-C4-P1)

200 most important genes:

  gene name fitness t score description  
LU632_RS15245 purE -5.4 -2.0 5-(carboxyamino)imidazole ribonucleotide mutase compare
LU632_RS23980 tatC -5.3 -8.1 Sec-independent protein translocase subunit TatC compare
LU632_RS15425 rpoE -4.7 -7.7 RNA polymerase sigma factor RpoE compare
LU632_RS16115 sdhC -4.6 -3.1 succinate dehydrogenase cytochrome b556 subunit compare
LU632_RS17820 ndk -4.5 -1.7 nucleoside-diphosphate kinase compare
LU632_RS07865 purF -4.5 -3.1 amidophosphoribosyltransferase compare
LU632_RS08880 -4.4 -1.8 ABC transporter permease compare
LU632_RS09955 pyrD -4.1 -2.8 quinone-dependent dihydroorotate dehydrogenase compare
LU632_RS02865 leuD -4.0 -4.8 3-isopropylmalate dehydratase small subunit compare
LU632_RS22140 glnL -4.0 -7.6 nitrogen regulation protein NR(II) compare
LU632_RS21360 degS -3.8 -8.2 outer membrane-stress sensor serine endopeptidase DegS compare
LU632_RS07905 -3.8 -0.8 IS91 family transposase compare
LU632_RS07775 aroC -3.8 -2.6 chorismate synthase compare
LU632_RS02755 carA -3.8 -2.6 glutamine-hydrolyzing carbamoyl-phosphate synthase small subunit compare
LU632_RS08815 -3.8 -2.2 colanic acid biosynthesis glycosyltransferase WcaL compare
LU632_RS16110 sdhD -3.8 -4.5 succinate dehydrogenase membrane anchor subunit compare
LU632_RS08790 -3.8 -4.5 EpsG family protein compare
LU632_RS08785 -3.7 -3.6 glycosyltransferase family 2 protein compare
LU632_RS06615 ptsI -3.7 -3.6 phosphoenolpyruvate-protein phosphotransferase PtsI compare
LU632_RS08275 purM -3.6 -2.5 phosphoribosylformylglycinamidine cyclo-ligase compare
LU632_RS02875 leuB -3.6 -4.9 3-isopropylmalate dehydrogenase compare
LU632_RS16135 pxpA -3.6 -1.5 5-oxoprolinase subunit PxpA compare
LU632_RS08775 -3.6 -2.5 protein tyrosine phosphatase compare
LU632_RS02870 leuC -3.6 -3.5 3-isopropylmalate dehydratase large subunit compare
LU632_RS11470 asr -3.5 -1.8 acid resistance repetitive basic protein Asr compare
LU632_RS20950 pyrB -3.5 -2.4 aspartate carbamoyltransferase compare
LU632_RS03735 -3.4 -1.4 DUF1435 domain-containing protein compare
LU632_RS17975 purL -3.4 -4.1 phosphoribosylformylglycinamidine synthase compare
LU632_RS09475 mntR -3.4 -2.1 manganese-binding transcriptional regulator MntR compare
LU632_RS18045 -3.4 -0.7 hypothetical protein compare
LU632_RS25495 -3.4 -1.2 type II toxin-antitoxin system MqsA family antitoxin compare
LU632_RS19275 ftsE -3.3 -4.2 cell division ATP-binding protein FtsE compare
LU632_RS24405 -3.3 -6.7 branched-chain amino acid transaminase compare
LU632_RS02750 carB -3.3 -3.9 carbamoyl-phosphate synthase large subunit compare
LU632_RS08885 -3.3 -3.4 ABC transporter ATP-binding protein compare
LU632_RS08920 hisF -3.3 -3.9 imidazole glycerol phosphate synthase subunit HisF compare
LU632_RS21240 mlaE -3.3 -3.3 lipid asymmetry maintenance ABC transporter permease subunit MlaE compare
LU632_RS24645 -3.2 -1.9 IS630 family transposase compare
LU632_RS16880 -3.2 -0.7 DTW domain-containing protein compare
LU632_RS10340 pyrC -3.2 -2.2 dihydroorotase compare
LU632_RS08925 hisA -3.2 -1.5 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino]imidazole-4- carboxamide isomerase compare
LU632_RS02100 -3.2 -9.6 hemolysin family protein compare
LU632_RS08780 wzc -3.2 -6.8 tyrosine-protein kinase Wzc compare
LU632_RS22135 glnG -3.2 -5.2 nitrogen regulation protein NR(I) compare
LU632_RS24155 -3.1 -1.3 class I adenylate cyclase compare
LU632_RS21755 -3.1 -7.8 adenylosuccinate synthase compare
LU632_RS15640 -3.1 -1.3 helix-turn-helix domain-containing protein compare
LU632_RS19610 argB -3.1 -1.7 acetylglutamate kinase compare
LU632_RS17615 -3.1 -2.4 YejL family protein compare
LU632_RS05960 sdhE -3.1 -1.5 FAD assembly factor SdhE compare
LU632_RS04305 -3.1 -0.6 DNA primase compare
LU632_RS19930 rseP -3.1 -2.1 sigma E protease regulator RseP compare
LU632_RS06985 -3.0 -0.6 hypothetical protein compare
LU632_RS21365 mdh -3.0 -4.1 malate dehydrogenase compare
LU632_RS15800 -3.0 -1.2 hypothetical protein compare
LU632_RS19585 sthA -3.0 -9.3 Si-specific NAD(P)(+) transhydrogenase compare
LU632_RS08770 -3.0 -2.1 polysaccharide export protein compare
LU632_RS21085 secG -3.0 -1.7 preprotein translocase subunit SecG compare
LU632_RS03310 -3.0 -11.0 sucrose-6-phosphate hydrolase compare
LU632_RS08930 hisH -3.0 -6.5 imidazole glycerol phosphate synthase subunit HisH compare
LU632_RS16100 -3.0 -1.9 succinate dehydrogenase iron-sulfur subunit compare
LU632_RS08820 -3.0 -2.0 lipopolysaccharide biosynthesis protein compare
LU632_RS12500 pyrF -2.9 -3.4 orotidine-5'-phosphate decarboxylase compare
LU632_RS20900 argF -2.9 -8.9 ornithine carbamoyltransferase compare
LU632_RS22810 -2.8 -8.4 aspartate aminotransferase family protein compare
LU632_RS17035 -2.8 -0.6 DinI family protein compare
LU632_RS16105 sdhA -2.8 -5.7 succinate dehydrogenase flavoprotein subunit compare
LU632_RS15860 istB -2.8 -1.6 IS21-like element helper ATPase IstB compare
LU632_RS19615 argC -2.8 -5.6 N-acetyl-gamma-glutamyl-phosphate reductase compare
LU632_RS23445 -2.8 -1.2 ProQ/FinO family protein compare
LU632_RS02880 leuA -2.8 -8.6 2-isopropylmalate synthase compare
LU632_RS21245 mlaF -2.8 -6.9 phospholipid ABC transporter ATP-binding protein MlaF compare
LU632_RS15250 purK -2.7 -1.9 5-(carboxyamino)imidazole ribonucleotide synthase compare
LU632_RS21235 mlaD -2.7 -5.8 outer membrane lipid asymmetry maintenance protein MlaD compare
LU632_RS04250 yiaK -2.7 -3.1 3-dehydro-L-gulonate 2-dehydrogenase compare
LU632_RS22945 -2.7 -1.0 hypothetical protein compare
LU632_RS04710 -2.7 -0.5 IS110 family transposase compare
LU632_RS06040 lysA -2.6 -5.4 diaminopimelate decarboxylase compare
LU632_RS16415 tatE -2.5 -0.5 twin-arginine translocase subunit TatE compare
LU632_RS08000 nuoI -2.5 -1.7 NADH-quinone oxidoreductase subunit NuoI compare
LU632_RS21225 mlaB -2.5 -3.0 lipid asymmetry maintenance protein MlaB compare
LU632_RS20695 bacA -2.5 -3.5 undecaprenyl-diphosphate phosphatase compare
LU632_RS22960 feoA -2.5 -0.5 ferrous iron transporter A compare
LU632_RS09795 aroA -2.4 -6.5 3-phosphoshikimate 1-carboxyvinyltransferase compare
LU632_RS24400 ilvD -2.4 -7.6 dihydroxy-acid dehydratase compare
LU632_RS14075 -2.4 -2.9 hypothetical protein compare
LU632_RS08045 -2.4 -2.3 LysR substrate-binding domain-containing protein compare
LU632_RS17420 -2.4 -1.0 phosphatidylinositol-specific phospholipase C domain-containing protein compare
LU632_RS19270 ftsX -2.4 -7.7 permease-like cell division protein FtsX compare
LU632_RS14010 ldcA -2.4 -1.6 muramoyltetrapeptide carboxypeptidase compare
LU632_RS23215 -2.4 -0.5 VirK/YbjX family protein compare
LU632_RS08945 hisD -2.4 -4.5 histidinol dehydrogenase compare
LU632_RS04600 -2.4 -0.8 hypothetical protein compare
LU632_RS08800 -2.3 -1.1 glycosyltransferase compare
LU632_RS18420 -2.3 -0.7 LysE family translocator compare
LU632_RS22940 ompR -2.3 -1.6 two-component system response regulator OmpR compare
LU632_RS19600 argH -2.3 -8.8 argininosuccinate lyase compare
LU632_RS03305 -2.3 -6.3 sucrose-specific PTS transporter subunit IIBC compare
LU632_RS19015 cspA -2.3 -0.7 RNA chaperone/antiterminator CspA compare
LU632_RS02465 -2.3 -0.5 IS256 family transposase compare
LU632_RS14915 -2.3 -1.1 DDE-type integrase/transposase/recombinase compare
LU632_RS02140 -2.3 -1.9 ribosome-associated protein compare
LU632_RS26120 -2.2 -1.7 WGR domain-containing protein compare
LU632_RS23875 dsbA -2.2 -0.8 thiol:disulfide interchange protein DsbA compare
LU632_RS07995 nuoH -2.2 -3.0 NADH-quinone oxidoreductase subunit NuoH compare
LU632_RS06210 argA -2.2 -3.7 amino-acid N-acetyltransferase compare
LU632_RS19285 rsmD -2.2 -1.7 16S rRNA (guanine(966)-N(2))-methyltransferase compare
LU632_RS16120 -2.2 -10.7 citrate synthase compare
LU632_RS00420 -2.2 -1.8 type III secretion system protein compare
LU632_RS15765 -2.2 -0.6 IS481 family transposase compare
LU632_RS21230 mlaC -2.2 -4.2 phospholipid-binding protein MlaC compare
LU632_RS23330 -2.2 -2.7 dihydroxyacetone kinase subunit DhaK compare
LU632_RS02295 -2.2 -1.7 DUF1090 domain-containing protein compare
LU632_RS08335 -2.1 -0.9 phosphoribosylaminoimidazolesuccinocarboxamide synthase compare
LU632_RS12940 purU -2.1 -10.2 formyltetrahydrofolate deformylase compare
LU632_RS23985 tatB -2.1 -2.7 Sec-independent protein translocase protein TatB compare
LU632_RS01090 rnhA -2.1 -0.9 ribonuclease HI compare
LU632_RS13930 -2.1 -1.1 transposase compare
LU632_RS00655 -2.1 -1.1 DotU family type IV/VI secretion system protein compare
LU632_RS05125 -2.1 -0.9 TIGR03745 family integrating conjugative element membrane protein compare
LU632_RS24260 trxA -2.1 -2.1 thioredoxin TrxA compare
LU632_RS22015 pyrE -2.0 -1.4 orotate phosphoribosyltransferase compare
LU632_RS10270 -2.0 -1.4 glucan biosynthesis protein G compare
LU632_RS14845 yceD -2.0 -0.6 23S rRNA accumulation protein YceD compare
LU632_RS09245 -2.0 -3.5 L,D-transpeptidase family protein compare
LU632_RS02910 rsmH -2.0 -4.6 16S rRNA (cytosine(1402)-N(4))-methyltransferase RsmH compare
LU632_RS08915 hisIE -2.0 -3.4 bifunctional phosphoribosyl-AMP cyclohydrolase/phosphoribosyl-ATP diphosphatase HisIE compare
LU632_RS19605 -2.0 -4.7 argininosuccinate synthase compare
LU632_RS15335 -2.0 -1.0 hypothetical protein compare
LU632_RS06675 cysM -2.0 -2.2 cysteine synthase CysM compare
LU632_RS16575 -2.0 -0.9 hypothetical protein compare
LU632_RS03005 yacG -2.0 -1.4 DNA gyrase inhibitor YacG compare
LU632_RS07300 mlaA -1.9 -5.7 phospholipid-binding lipoprotein MlaA compare
LU632_RS25620 -1.9 -2.4 hypothetical protein compare
LU632_RS06525 -1.9 -3.8 Nramp family divalent metal transporter compare
LU632_RS08935 hisB -1.9 -5.1 bifunctional histidinol-phosphatase/imidazoleglycerol-phosphate dehydratase HisB compare
LU632_RS04810 -1.9 -0.6 hypothetical protein compare
LU632_RS03535 -1.9 -2.7 DinI family protein compare
LU632_RS13950 ychF -1.9 -1.6 redox-regulated ATPase YchF compare
LU632_RS14735 -1.9 -4.1 glycine zipper 2TM domain-containing protein compare
LU632_RS18500 tgt -1.9 -2.2 tRNA guanosine(34) transglycosylase Tgt compare
LU632_RS03300 -1.9 -8.3 carbohydrate porin compare
LU632_RS08855 rfbD -1.9 -5.3 dTDP-4-dehydrorhamnose reductase compare
LU632_RS19960 -1.9 -0.7 hypothetical protein compare
LU632_RS22410 metA -1.9 -7.5 homoserine O-succinyltransferase compare
LU632_RS22445 aroE -1.9 -2.7 shikimate dehydrogenase compare
LU632_RS24840 kup -1.9 -6.4 low affinity potassium transporter Kup compare
LU632_RS09745 -1.9 -0.8 DNA translocase FtsK 4TM domain-containing protein compare
LU632_RS23360 -1.8 -2.6 Sua5/YciO/YrdC/YwlC family protein compare
LU632_RS00495 sctS -1.8 -0.8 type III secretion system export apparatus subunit SctS compare
LU632_RS19640 metB -1.8 -5.1 cystathionine gamma-synthase compare
LU632_RS07985 nuoF -1.8 -3.8 NADH-quinone oxidoreductase subunit NuoF compare
LU632_RS18585 -1.8 -0.6 DUF3251 domain-containing protein compare
LU632_RS07965 -1.8 -3.4 NADH-quinone oxidoreductase subunit A compare
LU632_RS04465 -1.8 -1.1 helix-turn-helix domain-containing protein compare
LU632_RS05475 -1.8 -2.3 YqgE/AlgH family protein compare
LU632_RS12560 -1.8 -0.5 DUF2498 family protein compare
LU632_RS04120 radC -1.7 -1.6 DNA repair protein RadC compare
LU632_RS15445 tyrA -1.7 -6.3 bifunctional chorismate mutase/prephenate dehydrogenase compare
LU632_RS07990 nuoG -1.7 -3.4 NADH-quinone oxidoreductase subunit NuoG compare
LU632_RS22865 aroB -1.7 -1.6 3-dehydroquinate synthase compare
LU632_RS11520 -1.7 -4.2 L-Ala-D/L-Glu epimerase compare
LU632_RS06885 -1.7 -1.2 Phage antitermination protein q compare
LU632_RS08540 -1.7 -0.8 hypothetical protein compare
LU632_RS01015 purD -1.7 -3.4 phosphoribosylamine--glycine ligase compare
LU632_RS06610 crr -1.7 -0.8 PTS glucose transporter subunit IIA compare
LU632_RS14835 plsX -1.7 -2.8 phosphate acyltransferase PlsX compare
LU632_RS13465 -1.7 -2.2 cytochrome B compare
LU632_RS12400 -1.7 -1.0 DNA-binding protein compare
LU632_RS10295 -1.7 -3.4 LpxL/LpxP family Kdo(2)-lipid IV(A) lauroyl/palmitoleoyl acyltransferasee compare
LU632_RS19440 -1.7 -1.2 IS5 family transposase compare
LU632_RS08950 hisG -1.6 -5.1 ATP phosphoribosyltransferase compare
LU632_RS00165 -1.6 -0.8 IS6 family transposase compare
LU632_RS04545 -1.6 -2.0 hypothetical protein compare
LU632_RS08210 -1.6 -1.1 hypothetical protein compare
LU632_RS17325 fruB -1.6 -6.1 fused PTS fructose transporter subunit IIA/HPr protein compare
LU632_RS08005 nuoJ -1.6 -2.9 NADH-quinone oxidoreductase subunit J compare
LU632_RS08015 nuoL -1.6 -5.4 NADH-quinone oxidoreductase subunit L compare
LU632_RS21895 envC -1.6 -5.7 murein hydrolase activator EnvC compare
LU632_RS19850 arfB -1.6 -2.0 aminoacyl-tRNA hydrolase compare
LU632_RS21780 -1.6 -3.0 hypothetical protein compare
LU632_RS13115 minC -1.6 -4.8 septum site-determining protein MinC compare
LU632_RS20750 -1.6 -1.1 hypothetical protein compare
LU632_RS20980 nrdG -1.6 -1.7 anaerobic ribonucleoside-triphosphate reductase-activating protein compare
LU632_RS08940 hisC -1.6 -5.6 histidinol-phosphate transaminase compare
LU632_RS04630 -1.6 -0.9 hypothetical protein compare
LU632_RS26100 -1.6 -2.9 phage holin family protein compare
LU632_RS11755 -1.6 -3.2 DUF1378 family protein compare
LU632_RS15440 srmB -1.6 -5.6 ATP-dependent RNA helicase SrmB compare
LU632_RS02070 hflC -1.6 -1.3 protease modulator HflC compare
LU632_RS20545 metC -1.6 -4.2 cystathionine beta-lyase compare
LU632_RS21565 -1.6 -2.9 hypothetical protein compare
LU632_RS13595 otsB -1.6 -2.3 trehalose-phosphatase compare
LU632_RS00465 -1.6 -0.8 type III secretion system protein compare
LU632_RS08020 nuoM -1.6 -3.3 NADH-quinone oxidoreductase subunit M compare
LU632_RS07285 -1.6 -1.0 DinI family protein compare
LU632_RS02860 -1.5 -1.9 hypothetical protein compare
LU632_RS12865 -1.5 -7.6 ABC transporter ATP-binding protein compare
LU632_RS14460 -1.5 -3.4 replication protein P compare
LU632_RS24250 wecA -1.5 -6.9 UDP-N-acetylglucosamine--undecaprenyl-phosphate N-acetylglucosaminephosphotransferase compare


Specific Phenotypes

For 1 genes in this experiment