Experiment set2S52 for Erwinia amylovora T8

Compare to:

Matrix:pear;Phage:cocktail;Temp:17;Samp:6-8

200 most important genes:

  gene name fitness t score description  
OLJFJH_12160 -4.8 -0.7 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino]imidazole-4-carboxamide isomerase compare
OLJFJH_12885 -3.5 -7.0 lauroyl-Kdo(2)-lipid IV(A) myristoyltransferase compare
OLJFJH_01730 -3.4 -1.3 hypothetical protein compare
OLJFJH_10645 -3.3 -3.4 phosphoribosylaminoimidazolesuccinocarboxamide synthase compare
OLJFJH_01395 -3.3 -14.2 carbamoyl-phosphate synthase large subunit compare
OLJFJH_11455 -3.3 -0.6 NADH-quinone oxidoreductase subunit NuoK compare
OLJFJH_05615 -3.2 -1.7 Conserved uncharacterized protein compare
OLJFJH_06785 -3.2 -14.5 bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase compare
OLJFJH_01400 -3.1 -13.0 carbamoyl phosphate synthase small subunit compare
OLJFJH_07335 -3.1 -15.0 ornithine carbamoyltransferase compare
OLJFJH_06780 -3.0 -12.1 phosphoribosylamine--glycine ligase compare
OLJFJH_06130 -2.9 -17.8 argininosuccinate lyase compare
OLJFJH_15555 -2.9 -1.4 23S rRNA accumulation protein YceD compare
OLJFJH_15175 -2.9 -12.7 N-acetyl-gamma-glutamyl-phosphate reductase compare
OLJFJH_06120 -2.8 -3.1 acetylglutamate kinase compare
OLJFJH_06125 -2.8 -12.9 argininosuccinate synthase compare
OLJFJH_10305 -2.8 -15.1 phosphoribosylformylglycinamidine synthase compare
OLJFJH_12075 -2.7 -12.8 Amylovoran biosynthesis protein AmsL compare
OLJFJH_06115 -2.6 -10.2 acetylornithine deacetylase compare
OLJFJH_12150 -2.6 -3.8 bifunctional phosphoribosyl-AMP cyclohydrolase/phosphoribosyl-ATP diphosphatase HisIE compare
OLJFJH_04030 -2.6 -12.6 bifunctional succinylornithine transaminase/acetylornithine transaminase compare
OLJFJH_11280 -2.6 -11.9 amidophosphoribosyltransferase compare
OLJFJH_09115 -2.6 -10.7 amino-acid N-acetyltransferase compare
OLJFJH_05510 -2.6 -5.4 ribosome-dependent GTPase TypA compare
OLJFJH_12050 -2.5 -2.1 Amylovoran biosynthesis glycosyltransferase AmsD compare
OLJFJH_13440 -2.5 -1.4 TonB system transport protein TonB compare
OLJFJH_17635 -2.5 -10.1 5-(carboxyamino)imidazole ribonucleotide synthase compare
OLJFJH_12040 -2.5 -6.7 Amylovoran biosynthesis glycosyltransferase AmsB compare
OLJFJH_12070 -2.5 -7.4 Amylovoran biosynthesis glycosyltransferase AmsK compare
OLJFJH_05470 -2.5 -1.0 DNA polymerase I compare
OLJFJH_12180 -2.5 -14.3 histidinol dehydrogenase compare
OLJFJH_12155 -2.4 -5.3 imidazole glycerol phosphate synthase subunit HisF compare
OLJFJH_12175 -2.4 -9.3 histidinol-phosphate transaminase compare
OLJFJH_17720 -2.4 -5.3 Cys-tRNA(Pro)/Cys-tRNA(Cys) deacylase YbaK compare
OLJFJH_10590 -2.4 -6.3 Phosphoribosylformylglycinamidine cyclo-ligase compare
OLJFJH_06105 -2.3 -12.0 methylenetetrahydrofolate reductase compare
OLJFJH_17630 -2.3 -0.9 5-(carboxyamino)imidazole ribonucleotide mutase compare
OLJFJH_05635 -2.3 -1.5 beta family protein compare
OLJFJH_08880 -2.3 -8.0 diaminopimelate decarboxylase compare
OLJFJH_12165 -2.2 -4.7 imidazole glycerol phosphate synthase subunit HisH compare
OLJFJH_12065 -2.2 -6.6 colanic acid biosynthesis pyruvyl transferase WcaK compare
OLJFJH_06480 -2.2 -14.3 5-methyltetrahydropteroyltriglutamate--homocysteine S-methyltransferase compare
OLJFJH_01300 -2.2 -2.8 3-isopropylmalate dehydratase small subunit compare
OLJFJH_06475 -2.2 -6.1 HTH-type transcriptional regulator MetR compare
OLJFJH_01290 -2.2 -15.2 3-isopropylmalate dehydrogenase compare
OLJFJH_01370 -2.2 -1.8 16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))-dimethyltransferase RsmA compare
OLJFJH_13475 -2.1 -12.5 tryptophan synthase subunit beta compare
OLJFJH_10740 -2.1 -0.7 protein YpfM compare
OLJFJH_16950 -2.1 -1.8 2-oxoglutarate dehydrogenase E1 component compare
OLJFJH_07330 -2.1 -9.0 aspartate carbamoyltransferase compare
OLJFJH_12170 -2.1 -6.6 bifunctional histidinol-phosphatase/imidazoleglycerol-phosphate dehydratase HisB compare
OLJFJH_01295 -2.1 -10.3 3-isopropylmalate dehydratase large subunit compare
OLJFJH_03260 -2.1 -8.3 translation factor (SUA5) compare
OLJFJH_10500 -2.0 -4.1 IMP dehydrogenase compare
OLJFJH_04910 -2.0 -0.7 hypothetical protein compare
OLJFJH_13470 -2.0 -8.1 tryptophan synthase subunit alpha compare
OLJFJH_10675 -2.0 -1.1 hypothetical protein compare
OLJFJH_02410 -2.0 -4.2 3'(2') 5'-bisphosphate nucleotidase CysQ compare
OLJFJH_04990 -2.0 -1.3 mannitol-1-phosphate 5-dehydrogenase compare
OLJFJH_06095 -1.9 -9.7 cystathionine gamma-synthase compare
OLJFJH_09310 -1.9 -6.3 phosphoadenylyl-sulfate reductase compare
OLJFJH_15670 -1.9 -4.0 dihydroorotase compare
OLJFJH_01490 -1.9 -6.4 homoserine kinase compare
OLJFJH_00595 -1.9 -4.4 sigma E protease regulator RseP compare
OLJFJH_08795 -1.9 -9.5 hydrolase compare
OLJFJH_03580 -1.9 -0.6 transcriptional repressor LexA compare
OLJFJH_13355 -1.9 -6.2 4-oxalmesaconate hydratase compare
OLJFJH_12315 -1.9 -1.9 E3 ubiquitin--protein ligase compare
OLJFJH_10430 -1.9 -1.0 nucleoside-diphosphate kinase compare
OLJFJH_01595 -1.9 -3.8 phosphoserine phosphatase compare
OLJFJH_10200 -1.8 -5.2 ATP-dependent RNA helicase SrmB compare
OLJFJH_00840 -1.8 -1.8 YacC family pilotin-like protein compare
OLJFJH_01485 -1.8 -8.0 threonine synthase compare
OLJFJH_06525 -1.8 -1.6 Sec-independent protein translocase subunit TatC compare
OLJFJH_13350 -1.8 -4.1 4-carboxy-4-hydroxy-2-oxoadipate aldolase/oxaloacetate decarboxylase compare
OLJFJH_13115 -1.8 -1.7 septum site-determining protein MinD compare
OLJFJH_03650 -1.8 -10.9 homoserine O-succinyltransferase compare
OLJFJH_06225 -1.8 -10.1 branched-chain-amino-acid transaminase compare
OLJFJH_04080 -1.7 -2.5 adenine-specific DNA-methyltransferase compare
OLJFJH_07060 -1.7 -3.8 PTS IIA-like nitrogen regulatory protein PtsN compare
OLJFJH_15990 -1.7 -4.6 quinone-dependent dihydroorotate dehydrogenase compare
OLJFJH_04160 -1.7 -3.3 two-component system response regulator OmpR compare
OLJFJH_15720 -1.7 -10.2 glucan biosynthesis glucosyltransferase H compare
OLJFJH_09590 -1.7 -1.3 carbon storage regulator CsrA compare
OLJFJH_13570 -1.7 -5.3 orotidine-5'-phosphate decarboxylase compare
OLJFJH_12185 -1.7 -6.5 ATP phosphoribosyltransferase compare
OLJFJH_15725 -1.7 -5.3 glucan biosynthesis protein G compare
OLJFJH_07185 -1.7 -2.7 transcription elongation factor GreA compare
OLJFJH_06600 -1.7 -1.7 hypothetical protein compare
OLJFJH_17775 -1.6 -4.9 EamA-like transporter family compare
OLJFJH_12045 -1.6 -1.1 Amylovoran biosynthesis protein AmsC compare
OLJFJH_11060 -1.6 -1.7 oxidoreductase compare
OLJFJH_12850 -1.6 -1.0 crossover junction endodeoxyribonuclease RuvC compare
OLJFJH_17650 -1.6 -0.4 ABC transporter ATP-binding protein compare
OLJFJH_18380 -1.6 -0.4 anti-adapter protein IraP compare
OLJFJH_08735 -1.6 -5.5 phosphoglycerate dehydrogenase compare
OLJFJH_06230 -1.6 -9.1 dihydroxy-acid dehydratase compare
OLJFJH_13495 -1.6 -11.1 anthranilate synthase component 1 compare
OLJFJH_12120 -1.6 -1.0 UDP-galactopyranose mutase compare
OLJFJH_05910 -1.6 -5.3 protein-export chaperone SecB compare
OLJFJH_01285 -1.6 -8.2 2-isopropylmalate synthase compare
OLJFJH_09390 -1.6 -0.4 Transposase compare
OLJFJH_10865 -1.6 -0.7 cysteine synthase A compare
OLJFJH_03450 -1.6 -3.0 aromatic amino acid aminotransferase compare
OLJFJH_15635 -1.5 -0.8 anti-sigma-28 factor FlgM compare
OLJFJH_13510 -1.5 -3.9 23S rRNA pseudouridine(2605) synthase RluB compare
OLJFJH_12035 -1.5 -12.3 Putative tyrosine-protein kinase AmsA compare
OLJFJH_08750 -1.5 -1.7 cell division protein ZapA compare
OLJFJH_11450 -1.5 -2.8 NADH-quinone oxidoreductase subunit J compare
OLJFJH_05645 -1.5 -0.7 hypothetical protein compare
OLJFJH_06245 -1.5 -9.5 ketol-acid reductoisomerase compare
OLJFJH_10360 -1.5 -1.1 Fe-S cluster assembly transcriptional regulator IscR compare
OLJFJH_17090 -1.5 -1.7 N-acetylglucosamine-6-phosphate deacetylase compare
OLJFJH_05495 -1.5 -5.4 nitrogen regulation protein NR(I) compare
OLJFJH_07675 -1.5 -6.9 outer membrane channel protein TolC compare
OLJFJH_00745 -1.5 -8.6 bifunctional glycosyl transferase/transpeptidase compare
OLJFJH_12670 -1.5 -6.2 flippase compare
OLJFJH_13885 -1.4 -2.1 hypothetical protein compare
OLJFJH_09610 -1.4 -0.3 tRNA-Arg compare
OLJFJH_14200 -1.4 -2.5 hypothetical protein compare
OLJFJH_09105 -1.4 -2.5 exodeoxyribonuclease V subunit alpha compare
OLJFJH_17850 -1.4 -8.1 efflux transporter periplasmic adaptor subunit compare
OLJFJH_01495 -1.4 -8.1 bifunctional aspartate kinase/homoserine dehydrogenase I compare
OLJFJH_12030 -1.4 -7.4 putative low molecular weight protein-tyrosine-phosphatase AmsI compare
OLJFJH_08410 -1.4 -0.9 hypothetical protein compare
OLJFJH_09725 -1.4 -4.7 23S rRNA pseudouridine(1911/1915/1917) synthase RluD compare
OLJFJH_12025 -1.4 -8.0 Amylovoran export outer membrane protein AmsH compare
OLJFJH_02470 -1.4 -8.4 ribonuclease R compare
OLJFJH_16780 -1.4 -2.1 6-phosphogluconolactonase compare
OLJFJH_12965 -1.3 -0.8 Lysine exporter LysO compare
OLJFJH_08875 -1.3 -3.6 LysR family transcriptional regulator compare
OLJFJH_15005 -1.3 -0.8 type III secretion system export apparatus subunit SctS compare
OLJFJH_17855 -1.3 -6.7 multidrug efflux RND transporter permease subunit AcrB compare
OLJFJH_10700 -1.3 -0.5 type IV secretion protein Rhs compare
OLJFJH_08505 -1.3 -1.8 YggL 50S ribosome-binding protein compare
OLJFJH_05690 -1.3 -1.0 hypothetical protein compare
OLJFJH_11065 -1.3 -0.7 GNAT family N-acetyltransferase compare
OLJFJH_02090 -1.3 -4.9 sorbitol-6-phosphate dehydrogenase compare
OLJFJH_02970 -1.2 -2.9 histidine--tRNA ligase compare
OLJFJH_00700 -1.2 -1.1 Fe3+-hydroxamate ABC transporter ATP-binding protein FhuC compare
OLJFJH_07070 -1.2 -4.7 RNA polymerase factor sigma-54 compare
OLJFJH_02730 -1.2 -1.5 hypothetical protein compare
OLJFJH_11160 -1.2 -1.4 penicillin-insensitive murein endopeptidase compare
OLJFJH_18015 -1.2 -2.3 cytochrome o ubiquinol oxidase subunit III compare
OLJFJH_10685 -1.2 -0.7 Colicin immunity protein/pyocin immunity protein compare
OLJFJH_16040 -1.2 -5.6 Outer membrane porin OmpC/OmpF/PhoE compare
OLJFJH_17960 -1.2 -4.8 endopeptidase La compare
OLJFJH_07820 -1.2 -7.5 cystathionine beta-lyase compare
OLJFJH_09305 -1.2 -5.8 assimilatory sulfite reductase (NADPH) hemoprotein subunit compare
OLJFJH_01140 -1.2 -2.3 type II secretion system minor pseudopilin GspJ compare
OLJFJH_16495 -1.2 -1.5 hypothetical protein compare
OLJFJH_16315 -1.2 -1.7 YbjN domain-containing protein compare
OLJFJH_09710 -1.2 -7.8 bifunctional chorismate mutase/prephenate dehydratase compare
OLJFJH_15945 -1.2 -3.5 Lon protease compare
OLJFJH_06515 -1.2 -0.7 twin-arginine translocase subunit TatA compare
OLJFJH_13880 -1.1 -1.7 two-component system response regulator RstA compare
OLJFJH_10035 -1.1 -0.8 flagellar biosynthesis anti-sigma factor FlgM compare
OLJFJH_02270 -1.1 -1.1 Conserved uncharacterized protein compare
OLJFJH_15345 -1.1 -1.5 hypothetical protein compare
OLJFJH_17540 -1.1 -3.3 hypothetical protein compare
OLJFJH_13335 -1.1 -0.5 heme-binding protein compare
OLJFJH_14150 -1.1 -0.4 osmotically-inducible lipoprotein B compare
OLJFJH_06235 -1.1 -7.5 threonine ammonia-lyase biosynthetic compare
OLJFJH_04235 -1.1 -1.2 hypothetical protein compare
OLJFJH_05920 -1.1 -2.9 serine O-acetyltransferase compare
OLJFJH_06985 -1.1 -6.1 outer membrane-stress sensor serine endopeptidase DegS compare
OLJFJH_12135 -1.1 -1.1 CDP-Glycerol:Poly(glycerophosphate) glycerophosphotransferase compare
OLJFJH_10855 -1.1 -6.1 phosphoenolpyruvate-protein phosphotransferase PtsI compare
OLJFJH_08275 -1.1 -1.1 hypothetical protein compare
OLJFJH_02695 -1.1 -1.0 hypothetical protein compare
OLJFJH_11050 -1.1 -1.1 tRNA-Arg compare
OLJFJH_15640 -1.1 -2.1 flagellar biosynthesis protein FlgN compare
OLJFJH_11625 -1.1 -2.9 Conserved uncharacterized protein compare
OLJFJH_09065 -1.1 -0.7 thymidylate synthase compare
OLJFJH_16980 -1.1 -5.0 citrate synthase compare
OLJFJH_15475 -1.1 -5.2 penicillin-binding protein activator LpoB compare
OLJFJH_16935 -1.1 -4.9 succinate--CoA ligase subunit alpha compare
OLJFJH_14225 -1.1 -2.9 hypothetical protein compare
OLJFJH_16450 -1.1 -1.0 DksA/TraR family C4-type zinc finger protein compare
OLJFJH_13345 -1.1 -1.6 4-oxalomesaconate tautomerase compare
OLJFJH_02500 -1.0 -2.4 RNA chaperone Hfq compare
OLJFJH_05905 -1.0 -1.0 glutaredoxin 3 compare
OLJFJH_03740 -1.0 -0.4 alternative ribosome-rescue factor A compare
OLJFJH_03200 -1.0 -4.5 TonB-dependent siderophore receptor compare
OLJFJH_16965 -1.0 -1.8 succinate dehydrogenase membrane anchor subunit compare
OLJFJH_02725 -1.0 -1.5 hypothetical protein compare
OLJFJH_10515 -1.0 -0.5 hypothetical protein compare
OLJFJH_15680 -1.0 -1.6 biofilm formation regulator BssS compare
OLJFJH_11230 -1.0 -1.3 4-phosphoerythronate dehydrogenase PdxB compare
OLJFJH_03695 -1.0 -0.8 DNA topoisomerase I ssDNA-binding Zn-finger and Zn-ribbon domains compare
OLJFJH_09335 -1.0 -3.4 Adenylyl-sulfate kinase compare
OLJFJH_13655 -1.0 -3.9 putrescine ABC transporter permease SapB compare
OLJFJH_07540 -1.0 -1.1 integrase core domain-containing protein compare
OLJFJH_02680 -1.0 -2.0 hypothetical protein compare
OLJFJH_10930 -1.0 -1.6 DUF1323 domain-containing protein compare
OLJFJH_13650 -1.0 -3.0 peptide ABC transporter permease SapC compare
OLJFJH_10715 -1.0 -0.3 hypothetical protein compare
OLJFJH_11775 -1.0 -2.4 1-phosphofructokinase compare
OLJFJH_07450 -1.0 -0.9 hypothetical protein compare
OLJFJH_05195 -1.0 -2.5 phosphopantetheinyl transferase compare


Specific Phenotypes

For 1 genes in this experiment