Experiment set2S517 for Erwinia tracheiphila SCR3

Compare to:

Experiment:TE2, Cucumber 1 Petiole 2 (TE2-S-C1-P2)

200 most important genes:

  gene name fitness t score description  
LU632_RS23980 tatC -6.3 -4.3 Sec-independent protein translocase subunit TatC compare
LU632_RS15245 purE -6.1 -2.1 5-(carboxyamino)imidazole ribonucleotide mutase compare
LU632_RS17615 -5.9 -1.7 YejL family protein compare
LU632_RS08885 -5.7 -3.0 ABC transporter ATP-binding protein compare
LU632_RS23985 tatB -5.4 -4.3 Sec-independent protein translocase protein TatB compare
LU632_RS16115 sdhC -5.3 -3.4 succinate dehydrogenase cytochrome b556 subunit compare
LU632_RS21360 degS -5.2 -5.0 outer membrane-stress sensor serine endopeptidase DegS compare
LU632_RS19275 ftsE -5.1 -3.3 cell division ATP-binding protein FtsE compare
LU632_RS07865 purF -5.1 -3.5 amidophosphoribosyltransferase compare
LU632_RS15425 rpoE -5.1 -8.1 RNA polymerase sigma factor RpoE compare
LU632_RS21235 mlaD -4.9 -4.8 outer membrane lipid asymmetry maintenance protein MlaD compare
LU632_RS08880 -4.9 -2.0 ABC transporter permease compare
LU632_RS25465 -4.8 -1.7 hypothetical protein compare
LU632_RS26120 -4.7 -1.3 WGR domain-containing protein compare
LU632_RS08785 -4.7 -3.2 glycosyltransferase family 2 protein compare
LU632_RS09955 pyrD -4.6 -3.2 quinone-dependent dihydroorotate dehydrogenase compare
LU632_RS16110 sdhD -4.6 -4.5 succinate dehydrogenase membrane anchor subunit compare
LU632_RS02755 carA -4.5 -3.1 glutamine-hydrolyzing carbamoyl-phosphate synthase small subunit compare
LU632_RS08790 -4.5 -3.1 EpsG family protein compare
LU632_RS02100 -4.5 -5.3 hemolysin family protein compare
LU632_RS21240 mlaE -4.5 -2.7 lipid asymmetry maintenance ABC transporter permease subunit MlaE compare
LU632_RS08815 -4.4 -2.5 colanic acid biosynthesis glycosyltransferase WcaL compare
LU632_RS06615 ptsI -4.4 -4.3 phosphoenolpyruvate-protein phosphotransferase PtsI compare
LU632_RS09475 mntR -4.3 -1.9 manganese-binding transcriptional regulator MntR compare
LU632_RS21755 -4.3 -13.0 adenylosuccinate synthase compare
LU632_RS21875 gpsA -4.2 -10.5 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase compare
LU632_RS08275 purM -4.2 -2.9 phosphoribosylformylglycinamidine cyclo-ligase compare
LU632_RS21245 mlaF -4.2 -7.8 phospholipid ABC transporter ATP-binding protein MlaF compare
LU632_RS08775 -4.2 -2.9 protein tyrosine phosphatase compare
LU632_RS17975 purL -4.2 -2.9 phosphoribosylformylglycinamidine synthase compare
LU632_RS20950 pyrB -4.1 -2.9 aspartate carbamoyltransferase compare
LU632_RS22810 -4.1 -5.7 aspartate aminotransferase family protein compare
LU632_RS02750 carB -4.1 -2.8 carbamoyl-phosphate synthase large subunit compare
LU632_RS03310 -4.1 -13.7 sucrose-6-phosphate hydrolase compare
LU632_RS19585 sthA -4.0 -9.7 Si-specific NAD(P)(+) transhydrogenase compare
LU632_RS19615 argC -4.0 -4.8 N-acetyl-gamma-glutamyl-phosphate reductase compare
LU632_RS22140 glnL -4.0 -8.4 nitrogen regulation protein NR(II) compare
LU632_RS21225 mlaB -4.0 -2.4 lipid asymmetry maintenance protein MlaB compare
LU632_RS08780 wzc -4.0 -3.9 tyrosine-protein kinase Wzc compare
LU632_RS01385 -3.9 -0.8 hypothetical protein compare
LU632_RS07995 nuoH -3.9 -2.3 NADH-quinone oxidoreductase subunit NuoH compare
LU632_RS06675 cysM -3.9 -2.5 cysteine synthase CysM compare
LU632_RS06635 zipA -3.9 -1.7 cell division protein ZipA compare
LU632_RS19610 argB -3.8 -2.0 acetylglutamate kinase compare
LU632_RS20695 bacA -3.8 -4.1 undecaprenyl-diphosphate phosphatase compare
LU632_RS19930 rseP -3.8 -2.6 sigma E protease regulator RseP compare
LU632_RS15640 -3.8 -1.5 helix-turn-helix domain-containing protein compare
LU632_RS05960 sdhE -3.8 -1.8 FAD assembly factor SdhE compare
LU632_RS08925 hisA -3.8 -1.7 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino]imidazole-4- carboxamide isomerase compare
LU632_RS12500 pyrF -3.8 -2.6 orotidine-5'-phosphate decarboxylase compare
LU632_RS10340 pyrC -3.7 -3.6 dihydroorotase compare
LU632_RS24675 -3.7 -0.7 winged helix-turn-helix domain-containing protein compare
LU632_RS16105 sdhA -3.7 -2.5 succinate dehydrogenase flavoprotein subunit compare
LU632_RS24155 -3.7 -1.5 class I adenylate cyclase compare
LU632_RS16100 -3.6 -2.3 succinate dehydrogenase iron-sulfur subunit compare
LU632_RS01015 purD -3.6 -2.5 phosphoribosylamine--glycine ligase compare
LU632_RS10660 -3.6 -0.7 hypothetical protein compare
LU632_RS09635 -3.6 -1.5 YbjN domain-containing protein compare
LU632_RS08770 -3.6 -2.5 polysaccharide export protein compare
LU632_RS19270 ftsX -3.5 -10.9 permease-like cell division protein FtsX compare
LU632_RS19310 -3.5 -1.6 hypothetical protein compare
LU632_RS02875 leuB -3.5 -10.1 3-isopropylmalate dehydrogenase compare
LU632_RS02140 -3.5 -1.3 ribosome-associated protein compare
LU632_RS02870 leuC -3.5 -11.3 3-isopropylmalate dehydratase large subunit compare
LU632_RS22455 -3.5 -1.4 topoisomerase DNA-binding C4 zinc finger domain-containing protein compare
LU632_RS08820 -3.5 -3.4 lipopolysaccharide biosynthesis protein compare
LU632_RS07905 -3.4 -1.0 IS91 family transposase compare
LU632_RS19600 argH -3.4 -9.0 argininosuccinate lyase compare
LU632_RS15250 purK -3.3 -3.2 5-(carboxyamino)imidazole ribonucleotide synthase compare
LU632_RS14745 -3.3 -0.7 IS5 family transposase compare
LU632_RS17035 -3.3 -0.7 DinI family protein compare
LU632_RS05320 -3.3 -0.9 hypothetical protein compare
LU632_RS21955 -3.2 -1.1 glycosyltransferase family 4 protein compare
LU632_RS24250 wecA -3.2 -14.1 UDP-N-acetylglucosamine--undecaprenyl-phosphate N-acetylglucosaminephosphotransferase compare
LU632_RS21230 mlaC -3.2 -4.4 phospholipid-binding protein MlaC compare
LU632_RS06465 surE -3.2 -1.1 5'/3'-nucleotidase SurE compare
LU632_RS13085 dsbB -3.2 -4.7 disulfide bond formation protein DsbB compare
LU632_RS04250 yiaK -3.2 -3.6 3-dehydro-L-gulonate 2-dehydrogenase compare
LU632_RS08930 hisH -3.1 -7.4 imidazole glycerol phosphate synthase subunit HisH compare
LU632_RS18995 proC -3.1 -2.6 pyrroline-5-carboxylate reductase compare
LU632_RS19605 -3.1 -7.0 argininosuccinate synthase compare
LU632_RS23360 -3.1 -3.4 Sua5/YciO/YrdC/YwlC family protein compare
LU632_RS01430 -3.1 -1.1 hypothetical protein compare
LU632_RS14010 ldcA -3.1 -2.1 muramoyltetrapeptide carboxypeptidase compare
LU632_RS08920 hisF -3.1 -6.1 imidazole glycerol phosphate synthase subunit HisF compare
LU632_RS09795 aroA -3.0 -8.1 3-phosphoshikimate 1-carboxyvinyltransferase compare
LU632_RS11560 pspA -3.0 -2.1 phage shock protein PspA compare
LU632_RS20780 -3.0 -0.6 hypothetical protein compare
LU632_RS16415 tatE -3.0 -0.6 twin-arginine translocase subunit TatE compare
LU632_RS14835 plsX -2.9 -5.2 phosphate acyltransferase PlsX compare
LU632_RS08540 -2.9 -0.8 hypothetical protein compare
LU632_RS00745 -2.9 -0.6 hypothetical protein compare
LU632_RS08800 -2.9 -1.3 glycosyltransferase compare
LU632_RS07775 aroC -2.9 -4.5 chorismate synthase compare
LU632_RS23220 -2.9 -0.8 VirK/YbjX family protein compare
LU632_RS01320 crcB -2.9 -1.9 fluoride efflux transporter CrcB compare
LU632_RS13110 -2.9 -1.9 YcgL domain-containing protein compare
LU632_RS24840 kup -2.9 -6.9 low affinity potassium transporter Kup compare
LU632_RS17820 ndk -2.9 -2.2 nucleoside-diphosphate kinase compare
LU632_RS08805 -2.9 -12.4 phage tailspike protein compare
LU632_RS17830 -2.8 -1.1 MgtC/SapB family protein compare
LU632_RS04600 -2.8 -1.0 hypothetical protein compare
LU632_RS19620 argE -2.8 -2.0 acetylornithine deacetylase compare
LU632_RS03305 -2.8 -7.8 sucrose-specific PTS transporter subunit IIBC compare
LU632_RS18880 -2.8 -0.8 transposase compare
LU632_RS08335 -2.8 -1.1 phosphoribosylaminoimidazolesuccinocarboxamide synthase compare
LU632_RS18500 tgt -2.8 -1.9 tRNA guanosine(34) transglycosylase Tgt compare
LU632_RS02465 -2.8 -0.5 IS256 family transposase compare
LU632_RS23875 dsbA -2.8 -0.9 thiol:disulfide interchange protein DsbA compare
LU632_RS01090 rnhA -2.7 -1.1 ribonuclease HI compare
LU632_RS10270 -2.7 -1.3 glucan biosynthesis protein G compare
LU632_RS05210 -2.7 -1.1 TIGR03757 family integrating conjugative element protein compare
LU632_RS02865 leuD -2.7 -5.2 3-isopropylmalate dehydratase small subunit compare
LU632_RS24205 rffM -2.7 -8.1 lipopolysaccharide N-acetylmannosaminouronosyltransferase compare
LU632_RS22410 metA -2.7 -10.6 homoserine O-succinyltransferase compare
LU632_RS24490 -2.7 -0.9 hypothetical protein compare
LU632_RS24260 trxA -2.7 -2.4 thioredoxin TrxA compare
LU632_RS06985 -2.6 -0.7 hypothetical protein compare
LU632_RS24405 -2.6 -11.2 branched-chain amino acid transaminase compare
LU632_RS07965 -2.6 -2.5 NADH-quinone oxidoreductase subunit A compare
LU632_RS18005 -2.6 -5.8 O-antigen ligase family protein compare
LU632_RS22015 pyrE -2.6 -1.8 orotate phosphoribosyltransferase compare
LU632_RS01610 -2.6 -0.7 tail protein X compare
LU632_RS23445 -2.6 -1.2 ProQ/FinO family protein compare
LU632_RS07970 -2.6 -6.9 NADH-quinone oxidoreductase subunit B compare
LU632_RS09705 clpA -2.6 -7.9 ATP-dependent Clp protease ATP-binding subunit ClpA compare
LU632_RS25495 -2.6 -1.4 type II toxin-antitoxin system MqsA family antitoxin compare
LU632_RS03515 -2.5 -1.9 TraR/DksA family transcriptional regulator compare
LU632_RS05510 speA -2.5 -1.1 biosynthetic arginine decarboxylase compare
LU632_RS14500 -2.5 -3.2 hypothetical protein compare
LU632_RS07300 mlaA -2.5 -7.3 phospholipid-binding lipoprotein MlaA compare
LU632_RS00435 sctF -2.5 -0.5 type III secretion system needle filament subunit SctF compare
LU632_RS16485 arnA -2.5 -10.7 bifunctional UDP-4-amino-4-deoxy-L-arabinose formyltransferase/UDP-glucuronic acid oxidase ArnA compare
LU632_RS13115 minC -2.5 -7.9 septum site-determining protein MinC compare
LU632_RS11470 asr -2.5 -2.0 acid resistance repetitive basic protein Asr compare
LU632_RS21740 -2.5 -1.0 hypothetical protein compare
LU632_RS21895 envC -2.5 -8.2 murein hydrolase activator EnvC compare
LU632_RS06040 lysA -2.5 -7.1 diaminopimelate decarboxylase compare
LU632_RS02880 leuA -2.5 -9.0 2-isopropylmalate synthase compare
LU632_RS06210 argA -2.5 -6.0 amino-acid N-acetyltransferase compare
LU632_RS02555 nadR -2.4 -6.8 multifunctional transcriptional regulator/nicotinamide-nucleotide adenylyltransferase/ribosylnicotinamide kinase NadR compare
LU632_RS21345 -2.4 -7.4 cell division protein ZapE compare
LU632_RS02910 rsmH -2.4 -8.5 16S rRNA (cytosine(1402)-N(4))-methyltransferase RsmH compare
LU632_RS09745 -2.4 -1.0 DNA translocase FtsK 4TM domain-containing protein compare
LU632_RS08935 hisB -2.4 -7.7 bifunctional histidinol-phosphatase/imidazoleglycerol-phosphate dehydratase HisB compare
LU632_RS13375 -2.4 -0.7 transcriptional regulator compare
LU632_RS16480 -2.4 -3.4 4-deoxy-4-formamido-L-arabinose- phosphoundecaprenol deformylase compare
LU632_RS21575 -2.4 -3.3 Rpn family recombination-promoting nuclease/putative transposase compare
LU632_RS08870 -2.4 -4.5 glycosyltransferase family 2 protein compare
LU632_RS22135 glnG -2.4 -4.0 nitrogen regulation protein NR(I) compare
LU632_RS07975 nuoC -2.4 -7.4 NADH-quinone oxidoreductase subunit C/D compare
LU632_RS07980 nuoE -2.4 -0.7 NADH-quinone oxidoreductase subunit NuoE compare
LU632_RS15905 galT -2.4 -3.6 galactose-1-phosphate uridylyltransferase compare
LU632_RS07990 nuoG -2.3 -4.7 NADH-quinone oxidoreductase subunit NuoG compare
LU632_RS06610 crr -2.3 -1.1 PTS glucose transporter subunit IIA compare
LU632_RS08915 hisIE -2.3 -4.4 bifunctional phosphoribosyl-AMP cyclohydrolase/phosphoribosyl-ATP diphosphatase HisIE compare
LU632_RS02070 hflC -2.3 -1.3 protease modulator HflC compare
LU632_RS03300 -2.3 -9.6 carbohydrate porin compare
LU632_RS17325 fruB -2.3 -7.8 fused PTS fructose transporter subunit IIA/HPr protein compare
LU632_RS08000 nuoI -2.3 -3.3 NADH-quinone oxidoreductase subunit NuoI compare
LU632_RS02050 miaA -2.3 -2.0 tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA compare
LU632_RS10185 -2.3 -1.4 tail fiber assembly protein compare
LU632_RS20000 degP -2.3 -2.4 serine endoprotease DegP compare
LU632_RS02065 hflK -2.2 -1.6 FtsH protease activity modulator HflK compare
LU632_RS14345 -2.2 -2.0 hypothetical protein compare
LU632_RS01020 purH -2.2 -1.5 bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase compare
LU632_RS14520 -2.2 -1.7 hypothetical protein compare
LU632_RS03340 -2.2 -1.1 iron ABC transporter permease compare
LU632_RS21930 -2.2 -6.8 glycosyltransferase compare
LU632_RS20545 metC -2.2 -7.1 cystathionine beta-lyase compare
LU632_RS04270 ulaD -2.2 -3.4 3-keto-L-gulonate-6-phosphate decarboxylase UlaD compare
LU632_RS16120 -2.2 -10.4 citrate synthase compare
LU632_RS07985 nuoF -2.2 -4.2 NADH-quinone oxidoreductase subunit NuoF compare
LU632_RS18400 -2.2 -0.9 MFS transporter compare
LU632_RS11345 -2.1 -1.0 transposase compare
LU632_RS21880 secB -2.1 -2.5 protein-export chaperone SecB compare
LU632_RS08015 nuoL -2.1 -6.7 NADH-quinone oxidoreductase subunit L compare
LU632_RS19980 glnD -2.1 -1.0 bifunctional uridylyltransferase/uridylyl-removing protein GlnD compare
LU632_RS09085 pgl -2.1 -1.5 6-phosphogluconolactonase compare
LU632_RS21700 fklB -2.1 -0.9 peptidylprolyl isomerase compare
LU632_RS02085 cysQ -2.0 -1.1 3'(2'),5'-bisphosphate nucleotidase CysQ compare
LU632_RS24215 -2.0 -5.2 TDP-N-acetylfucosamine:lipid II N-acetylfucosaminyltransferase compare
LU632_RS02475 prfC -2.0 -9.3 peptide chain release factor 3 compare
LU632_RS26015 -2.0 -4.9 hypothetical protein compare
LU632_RS24240 wecB -2.0 -5.5 UDP-N-acetylglucosamine 2-epimerase (non-hydrolyzing) compare
LU632_RS21365 mdh -2.0 -3.1 malate dehydrogenase compare
LU632_RS19780 -1.9 -8.4 amino acid ABC transporter permease compare
LU632_RS20930 -1.9 -0.7 hypothetical protein compare
LU632_RS21675 -1.9 -0.6 hypothetical protein compare
LU632_RS20900 argF -1.9 -3.9 ornithine carbamoyltransferase compare
LU632_RS19815 gmhB -1.9 -0.6 D-glycero-beta-D-manno-heptose 1,7-bisphosphate 7-phosphatase compare
LU632_RS08865 rfbC -1.9 -5.1 dTDP-4-dehydrorhamnose 3,5-epimerase compare
LU632_RS11220 rnt -1.9 -4.0 ribonuclease T compare
LU632_RS20290 -1.9 -1.5 type 1 fimbrial protein compare
LU632_RS16490 arnC -1.9 -8.9 undecaprenyl-phosphate 4-deoxy-4-formamido-L-arabinose transferase compare
LU632_RS08020 nuoM -1.9 -4.8 NADH-quinone oxidoreductase subunit M compare
LU632_RS12940 purU -1.9 -8.2 formyltetrahydrofolate deformylase compare
LU632_RS19785 -1.9 -7.7 amino acid ABC transporter ATP-binding protein compare
LU632_RS23785 -1.9 -2.1 hypothetical protein compare
LU632_RS08005 nuoJ -1.9 -3.9 NADH-quinone oxidoreductase subunit J compare


Specific Phenotypes

For 1 genes in this experiment