Experiment set2S515 for Bacteroides stercoris CC31F

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Pectic galactan from potato 2.5 mg/mL carbon source

Group: carbon source
Media: Varel_Bryant_medium + Pectic galactan from potato (2.5 mg/mL)
Culturing: Bstercoris_CC31F_ML5, 96 deep-well microplate; 1.2 mL volume, Anaerobic, at 37 (C), shaken=0 rpm
By: Surya on 10/31/24
Media components: 15 uM Hemin, 134 uM L-Methionine, 15 uM Iron (II) sulfate heptahydrate, 8.25 mM L-Cysteine, 23.8 mM Sodium bicarbonate, Mineral 3B solution (6.6 mM Potassium phosphate monobasic, 15.4 mM Sodium Chloride, 98 uM Magnesium chloride hexahydrate, 176.5 uM Calcium chloride dihydrate, 4.2 uM Cobalt chloride hexahydrate, 50.5 uM Manganese (II) chloride tetrahydrate, 9.3 mM Ammonium chloride, 1.75 mM Sodium sulfate)

Specific Phenotypes

For 3 genes in this experiment

For carbon source Pectic galactan from potato in Bacteroides stercoris CC31F

For carbon source Pectic galactan from potato across organisms

SEED Subsystems

Subsystem #Specific
L-rhamnose utilization 2

Metabolic Maps

Color code by fitness: see overview map or list of maps.

Maps containing gene(s) with specific phenotypes:

MetaCyc Pathways

Pathways that contain genes with specific phenotypes:

Pathway #Steps #Present #Specific
L-rhamnose degradation I 5 4 2
L-lyxose degradation 4 1 1
superpathway of fucose and rhamnose degradation 12 6 2
superpathway of pentose and pentitol degradation 42 5 1