Experiment set2S510 for Erwinia tracheiphila SCR3

Compare to:

Experiment:TE2, Melon 5 Petiole 1 (TE2-S-M5-P1)

200 most important genes:

  gene name fitness t score description  
LU632_RS15245 purE -6.5 -2.8 5-(carboxyamino)imidazole ribonucleotide mutase compare
LU632_RS09955 pyrD -5.1 -3.5 quinone-dependent dihydroorotate dehydrogenase compare
LU632_RS07865 purF -5.0 -10.2 amidophosphoribosyltransferase compare
LU632_RS08815 -4.9 -3.4 colanic acid biosynthesis glycosyltransferase WcaL compare
LU632_RS23980 tatC -4.9 -10.5 Sec-independent protein translocase subunit TatC compare
LU632_RS02755 carA -4.7 -5.6 glutamine-hydrolyzing carbamoyl-phosphate synthase small subunit compare
LU632_RS16115 sdhC -4.6 -7.3 succinate dehydrogenase cytochrome b556 subunit compare
LU632_RS08785 -4.6 -5.5 glycosyltransferase family 2 protein compare
LU632_RS15425 rpoE -4.6 -7.7 RNA polymerase sigma factor RpoE compare
LU632_RS17975 purL -4.6 -4.5 phosphoribosylformylglycinamidine synthase compare
LU632_RS06615 ptsI -4.5 -8.6 phosphoenolpyruvate-protein phosphotransferase PtsI compare
LU632_RS08790 -4.5 -6.1 EpsG family protein compare
LU632_RS02750 carB -4.4 -3.1 carbamoyl-phosphate synthase large subunit compare
LU632_RS21755 -4.4 -14.3 adenylosuccinate synthase compare
LU632_RS08275 purM -4.4 -5.2 phosphoribosylformylglycinamidine cyclo-ligase compare
LU632_RS16110 sdhD -4.3 -9.0 succinate dehydrogenase membrane anchor subunit compare
LU632_RS01015 purD -4.1 -2.8 phosphoribosylamine--glycine ligase compare
LU632_RS08820 -4.0 -2.8 lipopolysaccharide biosynthesis protein compare
LU632_RS08925 hisA -4.0 -3.1 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino]imidazole-4- carboxamide isomerase compare
LU632_RS08780 wzc -4.0 -11.9 tyrosine-protein kinase Wzc compare
LU632_RS10340 pyrC -4.0 -6.0 dihydroorotase compare
LU632_RS08770 -3.9 -4.7 polysaccharide export protein compare
LU632_RS12500 pyrF -3.9 -4.6 orotidine-5'-phosphate decarboxylase compare
LU632_RS09475 mntR -3.8 -2.8 manganese-binding transcriptional regulator MntR compare
LU632_RS19615 argC -3.8 -7.6 N-acetyl-gamma-glutamyl-phosphate reductase compare
LU632_RS25495 -3.8 -1.9 type II toxin-antitoxin system MqsA family antitoxin compare
LU632_RS21085 secG -3.8 -3.2 preprotein translocase subunit SecG compare
LU632_RS21955 -3.8 -1.6 glycosyltransferase family 4 protein compare
LU632_RS02140 -3.7 -2.4 ribosome-associated protein compare
LU632_RS16105 sdhA -3.7 -8.2 succinate dehydrogenase flavoprotein subunit compare
LU632_RS08930 hisH -3.7 -8.4 imidazole glycerol phosphate synthase subunit HisH compare
LU632_RS15250 purK -3.6 -3.5 5-(carboxyamino)imidazole ribonucleotide synthase compare
LU632_RS21240 mlaE -3.6 -5.2 lipid asymmetry maintenance ABC transporter permease subunit MlaE compare
LU632_RS21360 degS -3.6 -11.5 outer membrane-stress sensor serine endopeptidase DegS compare
LU632_RS02100 -3.6 -14.8 hemolysin family protein compare
LU632_RS19930 rseP -3.6 -4.9 sigma E protease regulator RseP compare
LU632_RS20950 pyrB -3.5 -7.2 aspartate carbamoyltransferase compare
LU632_RS08775 -3.5 -4.3 protein tyrosine phosphatase compare
LU632_RS21875 gpsA -3.5 -13.1 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase compare
LU632_RS08800 -3.4 -1.8 glycosyltransferase compare
LU632_RS04250 yiaK -3.4 -4.7 3-dehydro-L-gulonate 2-dehydrogenase compare
LU632_RS08335 -3.3 -1.6 phosphoribosylaminoimidazolesuccinocarboxamide synthase compare
LU632_RS19585 sthA -3.2 -10.5 Si-specific NAD(P)(+) transhydrogenase compare
LU632_RS03310 -3.2 -15.6 sucrose-6-phosphate hydrolase compare
LU632_RS22015 pyrE -3.2 -2.2 orotate phosphoribosyltransferase compare
LU632_RS16415 tatE -3.2 -0.8 twin-arginine translocase subunit TatE compare
LU632_RS18420 -3.1 -1.1 LysE family translocator compare
LU632_RS08920 hisF -3.0 -7.0 imidazole glycerol phosphate synthase subunit HisF compare
LU632_RS02085 cysQ -3.0 -1.2 3'(2'),5'-bisphosphate nucleotidase CysQ compare
LU632_RS09745 -2.9 -1.4 DNA translocase FtsK 4TM domain-containing protein compare
LU632_RS09245 -2.9 -5.9 L,D-transpeptidase family protein compare
LU632_RS02465 -2.8 -0.7 IS256 family transposase compare
LU632_RS11345 -2.8 -1.3 transposase compare
LU632_RS22140 glnL -2.7 -10.8 nitrogen regulation protein NR(II) compare
LU632_RS20695 bacA -2.7 -4.2 undecaprenyl-diphosphate phosphatase compare
LU632_RS22810 -2.7 -11.1 aspartate aminotransferase family protein compare
LU632_RS19600 argH -2.7 -10.9 argininosuccinate lyase compare
LU632_RS24445 -2.7 -1.1 DUF413 domain-containing protein compare
LU632_RS24105 -2.7 -0.9 thioesterase family protein compare
LU632_RS07775 aroC -2.7 -4.3 chorismate synthase compare
LU632_RS01020 purH -2.6 -2.6 bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase compare
LU632_RS02870 leuC -2.6 -13.6 3-isopropylmalate dehydratase large subunit compare
LU632_RS10270 -2.6 -2.1 glucan biosynthesis protein G compare
LU632_RS21245 mlaF -2.6 -8.1 phospholipid ABC transporter ATP-binding protein MlaF compare
LU632_RS21365 mdh -2.6 -7.8 malate dehydrogenase compare
LU632_RS20590 -2.5 -2.1 antibiotic biosynthesis monooxygenase compare
LU632_RS07980 nuoE -2.5 -0.9 NADH-quinone oxidoreductase subunit NuoE compare
LU632_RS19275 ftsE -2.5 -6.0 cell division ATP-binding protein FtsE compare
LU632_RS06610 crr -2.5 -1.9 PTS glucose transporter subunit IIA compare
LU632_RS21225 mlaB -2.5 -5.7 lipid asymmetry maintenance protein MlaB compare
LU632_RS19665 ftsN -2.4 -4.3 cell division protein FtsN compare
LU632_RS07995 nuoH -2.4 -4.1 NADH-quinone oxidoreductase subunit NuoH compare
LU632_RS12940 purU -2.4 -12.5 formyltetrahydrofolate deformylase compare
LU632_RS14505 -2.3 -2.7 hypothetical protein compare
LU632_RS08880 -2.3 -3.0 ABC transporter permease compare
LU632_RS07970 -2.2 -8.2 NADH-quinone oxidoreductase subunit B compare
LU632_RS12925 rssB -2.2 -1.2 two-component system response regulator RssB compare
LU632_RS16285 -2.2 -1.8 tRNA-Met compare
LU632_RS02875 leuB -2.2 -8.7 3-isopropylmalate dehydrogenase compare
LU632_RS07300 mlaA -2.2 -8.5 phospholipid-binding lipoprotein MlaA compare
LU632_RS16100 -2.2 -3.7 succinate dehydrogenase iron-sulfur subunit compare
LU632_RS22135 glnG -2.2 -4.9 nitrogen regulation protein NR(I) compare
LU632_RS02070 hflC -2.2 -3.2 protease modulator HflC compare
LU632_RS03115 -2.2 -1.3 hypothetical protein compare
LU632_RS17615 -2.2 -3.8 YejL family protein compare
LU632_RS07985 nuoF -2.2 -5.3 NADH-quinone oxidoreductase subunit NuoF compare
LU632_RS21235 mlaD -2.2 -6.0 outer membrane lipid asymmetry maintenance protein MlaD compare
LU632_RS16090 odhB -2.1 -1.2 2-oxoglutarate dehydrogenase complex dihydrolipoyllysine-residue succinyltransferase compare
LU632_RS17820 ndk -2.1 -2.2 nucleoside-diphosphate kinase compare
LU632_RS13950 ychF -2.1 -3.4 redox-regulated ATPase YchF compare
LU632_RS04270 ulaD -2.1 -4.6 3-keto-L-gulonate-6-phosphate decarboxylase UlaD compare
LU632_RS08000 nuoI -2.1 -3.4 NADH-quinone oxidoreductase subunit NuoI compare
LU632_RS01510 -2.1 -1.7 hypothetical protein compare
LU632_RS08885 -2.1 -3.6 ABC transporter ATP-binding protein compare
LU632_RS24155 -2.1 -2.0 class I adenylate cyclase compare
LU632_RS23215 -2.1 -0.7 VirK/YbjX family protein compare
LU632_RS05320 -2.0 -1.1 hypothetical protein compare
LU632_RS14010 ldcA -2.0 -4.5 muramoyltetrapeptide carboxypeptidase compare
LU632_RS19270 ftsX -2.0 -8.2 permease-like cell division protein FtsX compare
LU632_RS08935 hisB -2.0 -7.0 bifunctional histidinol-phosphatase/imidazoleglycerol-phosphate dehydratase HisB compare
LU632_RS22150 typA -2.0 -1.4 ribosome-dependent GTPase TypA compare
LU632_RS04255 -2.0 -2.8 YhcH/YjgK/YiaL family protein compare
LU632_RS23025 -2.0 -1.1 transposase domain-containing protein compare
LU632_RS19610 argB -2.0 -2.9 acetylglutamate kinase compare
LU632_RS25000 -2.0 -1.8 DUF3164 family protein compare
LU632_RS08940 hisC -2.0 -9.6 histidinol-phosphate transaminase compare
LU632_RS08020 nuoM -2.0 -5.4 NADH-quinone oxidoreductase subunit M compare
LU632_RS13085 dsbB -1.9 -4.6 disulfide bond formation protein DsbB compare
LU632_RS05025 -1.9 -0.6 TIGR03749 family integrating conjugative element protein compare
LU632_RS08025 nuoN -1.9 -5.2 NADH-quinone oxidoreductase subunit NuoN compare
LU632_RS08005 nuoJ -1.9 -5.5 NADH-quinone oxidoreductase subunit J compare
LU632_RS08915 hisIE -1.9 -3.5 bifunctional phosphoribosyl-AMP cyclohydrolase/phosphoribosyl-ATP diphosphatase HisIE compare
LU632_RS08015 nuoL -1.8 -8.0 NADH-quinone oxidoreductase subunit L compare
LU632_RS24890 pstA -1.8 -1.3 phosphate ABC transporter permease PstA compare
LU632_RS07965 -1.8 -3.2 NADH-quinone oxidoreductase subunit A compare
LU632_RS05960 sdhE -1.8 -2.3 FAD assembly factor SdhE compare
LU632_RS24405 -1.8 -8.3 branched-chain amino acid transaminase compare
LU632_RS16480 -1.8 -4.1 4-deoxy-4-formamido-L-arabinose- phosphoundecaprenol deformylase compare
LU632_RS07990 nuoG -1.8 -6.0 NADH-quinone oxidoreductase subunit NuoG compare
LU632_RS02880 leuA -1.8 -8.3 2-isopropylmalate synthase compare
LU632_RS02865 leuD -1.8 -2.7 3-isopropylmalate dehydratase small subunit compare
LU632_RS03305 -1.8 -5.6 sucrose-specific PTS transporter subunit IIBC compare
LU632_RS06410 -1.8 -1.2 phosphoadenylyl-sulfate reductase compare
LU632_RS08805 -1.8 -8.3 phage tailspike protein compare
LU632_RS18565 -1.8 -2.8 IS1 family transposase compare
LU632_RS21880 secB -1.8 -2.9 protein-export chaperone SecB compare
LU632_RS22935 envZ -1.8 -5.5 two-component system sensor histidine kinase EnvZ compare
LU632_RS18400 -1.8 -1.3 MFS transporter compare
LU632_RS02910 rsmH -1.7 -6.2 16S rRNA (cytosine(1402)-N(4))-methyltransferase RsmH compare
LU632_RS08010 nuoK -1.7 -3.3 NADH-quinone oxidoreductase subunit NuoK compare
LU632_RS23310 gltP -1.7 -1.2 glutamate/aspartate:proton symporter GltP compare
LU632_RS25725 -1.7 -1.8 ParA family protein compare
LU632_RS21230 mlaC -1.7 -5.2 phospholipid-binding protein MlaC compare
LU632_RS16990 bamE -1.7 -1.7 outer membrane protein assembly factor BamE compare
LU632_RS20780 -1.7 -0.7 hypothetical protein compare
LU632_RS04810 -1.7 -0.8 hypothetical protein compare
LU632_RS09795 aroA -1.7 -9.4 3-phosphoshikimate 1-carboxyvinyltransferase compare
LU632_RS04260 -1.7 -4.4 MFS transporter compare
LU632_RS12910 -1.7 -2.4 NAD-dependent epimerase compare
LU632_RS02065 hflK -1.7 -1.7 FtsH protease activity modulator HflK compare
LU632_RS02590 gpmB -1.7 -4.0 2,3-diphosphoglycerate-dependent phosphoglycerate mutase GpmB compare
LU632_RS18555 -1.7 -2.2 hypothetical protein compare
LU632_RS20900 argF -1.7 -5.4 ornithine carbamoyltransferase compare
LU632_RS07975 nuoC -1.6 -7.9 NADH-quinone oxidoreductase subunit C/D compare
LU632_RS24840 kup -1.6 -6.4 low affinity potassium transporter Kup compare
LU632_RS19285 rsmD -1.6 -1.7 16S rRNA (guanine(966)-N(2))-methyltransferase compare
LU632_RS18500 tgt -1.6 -2.6 tRNA guanosine(34) transglycosylase Tgt compare
LU632_RS03140 sctS -1.6 -2.6 type III secretion system export apparatus subunit SctS compare
LU632_RS20175 -1.6 -1.1 hypothetical protein compare
LU632_RS22020 rph -1.6 -4.5 ribonuclease PH compare
LU632_RS08645 -1.6 -2.4 T3SS effector OspC family protein compare
LU632_RS08060 -1.6 -1.1 phage protease compare
LU632_RS13870 -1.6 -2.7 hypothetical protein compare
LU632_RS18685 -1.6 -1.8 DUF2635 domain-containing protein compare
LU632_RS05510 speA -1.6 -1.5 biosynthetic arginine decarboxylase compare
LU632_RS22940 ompR -1.6 -3.7 two-component system response regulator OmpR compare
LU632_RS24205 rffM -1.5 -5.2 lipopolysaccharide N-acetylmannosaminouronosyltransferase compare
LU632_RS08950 hisG -1.5 -5.3 ATP phosphoribosyltransferase compare
LU632_RS21700 fklB -1.5 -1.3 peptidylprolyl isomerase compare
LU632_RS22865 aroB -1.5 -2.1 3-dehydroquinate synthase compare
LU632_RS24225 rffA -1.5 -8.1 dTDP-4-amino-4,6-dideoxygalactose transaminase compare
LU632_RS09915 ompC -1.5 -4.7 porin OmpC compare
LU632_RS19815 gmhB -1.5 -0.8 D-glycero-beta-D-manno-heptose 1,7-bisphosphate 7-phosphatase compare
LU632_RS23890 mobA -1.5 -3.1 molybdenum cofactor guanylyltransferase compare
LU632_RS24215 -1.5 -5.1 TDP-N-acetylfucosamine:lipid II N-acetylfucosaminyltransferase compare
LU632_RS10910 -1.5 -1.3 hypothetical protein compare
LU632_RS17320 fruK -1.5 -2.6 1-phosphofructokinase compare
LU632_RS25930 -1.5 -6.2 acyltransferase compare
LU632_RS02050 miaA -1.5 -1.6 tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA compare
LU632_RS08850 rfbB -1.5 -3.0 dTDP-glucose 4,6-dehydratase compare
LU632_RS24885 pstC -1.4 -1.4 phosphate ABC transporter permease PstC compare
LU632_RS14835 plsX -1.4 -2.9 phosphate acyltransferase PlsX compare
LU632_RS03335 -1.4 -1.2 ABC transporter ATP-binding protein compare
LU632_RS08905 -1.4 -3.8 hypothetical protein compare
LU632_RS03300 -1.4 -5.9 carbohydrate porin compare
LU632_RS22090 -1.4 -1.1 pyocin activator PrtN family protein compare
LU632_RS00495 sctS -1.4 -1.0 type III secretion system export apparatus subunit SctS compare
LU632_RS03340 -1.4 -1.4 iron ABC transporter permease compare
LU632_RS13455 cmoA -1.4 -2.9 carboxy-S-adenosyl-L-methionine synthase CmoA compare
LU632_RS06335 -1.4 -4.9 glycerate kinase compare
LU632_RS06635 zipA -1.4 -2.7 cell division protein ZipA compare
LU632_RS07670 -1.4 -2.4 hypothetical protein compare
LU632_RS05410 mltC -1.4 -6.7 membrane-bound lytic murein transglycosylase MltC compare
LU632_RS19440 -1.4 -1.5 IS5 family transposase compare
LU632_RS10790 tagF -1.3 -6.3 type VI secretion system-associated protein TagF compare
LU632_RS24400 ilvD -1.3 -6.8 dihydroxy-acid dehydratase compare
LU632_RS21805 -1.3 -1.1 IS91 family transposase compare
LU632_RS08210 -1.3 -1.3 hypothetical protein compare
LU632_RS24260 trxA -1.3 -2.5 thioredoxin TrxA compare
LU632_RS21120 -1.3 -1.3 tyrosine-type recombinase/integrase compare
LU632_RS12665 -1.3 -3.0 YdbL family protein compare
LU632_RS17325 fruB -1.3 -4.8 fused PTS fructose transporter subunit IIA/HPr protein compare
LU632_RS00220 -1.3 -7.0 family 10 glycosylhydrolase compare
LU632_RS15445 tyrA -1.3 -6.4 bifunctional chorismate mutase/prephenate dehydrogenase compare
LU632_RS08540 -1.3 -0.9 hypothetical protein compare
LU632_RS01680 -1.3 -1.5 GpE family phage tail protein compare
LU632_RS25410 -1.3 -1.8 type II toxin-antitoxin system RelE/ParE family toxin compare
LU632_RS23220 -1.3 -1.1 VirK/YbjX family protein compare
LU632_RS07345 -1.3 -1.9 hypothetical protein compare
LU632_RS23360 -1.3 -3.2 Sua5/YciO/YrdC/YwlC family protein compare


Specific Phenotypes

None in this experiment

For Erwinia tracheiphila SCR3 in in planta experiments