Experiment set2S498 for Bacteroides stercoris CC31F
D-Xylose 10 mM carbon source
Group: carbon sourceMedia: Varel_Bryant_medium + D-Xylose (10 mM)
Culturing: Bstercoris_CC31F_ML5, 96 deep-well microplate; 1.2 mL volume, Anaerobic, at 37 (C), shaken=0 rpm
By: Surya on 10/31/24
Media components: 15 uM Hemin, 134 uM L-Methionine, 15 uM Iron (II) sulfate heptahydrate, 8.25 mM L-Cysteine, 23.8 mM Sodium bicarbonate, Mineral 3B solution (6.6 mM Potassium phosphate monobasic, 15.4 mM Sodium Chloride, 98 uM Magnesium chloride hexahydrate, 176.5 uM Calcium chloride dihydrate, 4.2 uM Cobalt chloride hexahydrate, 50.5 uM Manganese (II) chloride tetrahydrate, 9.3 mM Ammonium chloride, 1.75 mM Sodium sulfate)
Specific Phenotypes
For 4 genes in this experiment
For carbon source D-Xylose in Bacteroides stercoris CC31F
For carbon source D-Xylose across organisms
SEED Subsystems
| Subsystem | #Specific |
|---|---|
| Xylose utilization | 3 |
| NAD regulation | 1 |
| Ribitol, Xylitol, Arabitol, Mannitol and Sorbitol utilization | 1 |
Metabolic Maps
Color code by fitness: see overview map or list of maps.
Maps containing gene(s) with specific phenotypes:
MetaCyc Pathways
Pathways that contain genes with specific phenotypes:
| Pathway | #Steps | #Present | #Specific |
|---|---|---|---|
| D-xylose degradation I | 2 | 2 | 2 |
| D-arabinitol degradation I | 2 | 1 | 1 |
| xylitol degradation I | 2 | 1 | 1 |
| superpathway of glucose and xylose degradation | 17 | 16 | 2 |
| superpathway of pentose and pentitol degradation | 42 | 5 | 2 |