Experiment set2S497 for Hydrogenophaga sp. GW460-11-11-14-LB1

Compare to:

Ying_Others16 rep C; time point 3

200 most detrimental genes:

  gene name fitness t score description  
GFF4521 +5.2 43.4 ATP-dependent Clp protease ATP-binding subunit ClpA compare
GFF4042 +3.4 17.5 ATP-dependent Clp protease proteolytic subunit (EC 3.4.21.92) compare
GFF3442 +1.4 3.5 Cytochrome c oxidase polypeptide II (EC 1.9.3.1) compare
GFF831 +1.3 8.3 Heat-inducible transcription repressor HrcA compare
GFF2721 +1.2 8.2 Twitching motility protein PilT compare
GFF1272 +1.2 9.8 Adenosine (5')-pentaphospho-(5'')-adenosine pyrophosphohydrolase (EC 3.6.1.-) compare
GFF394 +1.2 8.5 transcriptional regulator, LuxR family compare
GFF2558 +1.2 3.2 hypothetical protein compare
GFF2462 +1.1 1.6 Ribosomal RNA small subunit methyltransferase E (EC 2.1.1.-) compare
GFF1944 +1.1 2.8 Cyanate hydratase (EC 4.2.1.104) compare
GFF4180 +1.0 2.7 Conjugative transfer protein TrbJ compare
GFF952 +1.0 2.1 Branched-chain amino acid transport ATP-binding protein LivG (TC 3.A.1.4.1) compare
GFF1971 +1.0 7.9 Transcriptional regulator, TetR family compare
GFF1335 +0.9 6.3 Type IV pilus biogenesis protein PilO compare
GFF1333 +0.9 5.1 Type IV pilus biogenesis protein PilQ compare
GFF4005 +0.9 1.7 hypothetical protein compare
GFF1119 +0.8 2.4 Copper tolerance protein compare
GFF5394 +0.8 3.9 FIG01210906: hypothetical protein compare
GFF1516 +0.8 2.0 Cyanoglobin; Hemoglobin-like protein HbN compare
GFF1446 +0.8 1.6 Flagellin protein FlaA compare
GFF5018 +0.8 2.2 Shikimate 5-dehydrogenase I alpha (EC 1.1.1.25) compare
GFF1472 +0.8 3.3 Regulatory protein, LuxR:Response regulator receiver compare
GFF479 +0.8 1.7 Citronellol and citronellal dehydrogenase compare
GFF1334 +0.8 5.4 Type IV pilus biogenesis protein PilP compare
GFF4399 +0.8 1.4 Chromosome (plasmid) partitioning protein ParA compare
GFF3900 +0.8 1.8 hypothetical protein compare
GFF1495 +0.8 1.5 Tricarboxylate transport protein TctC compare
GFF1439 +0.8 5.0 Flagellar transcriptional activator FlhD compare
GFF1428 +0.8 3.4 RNA polymerase sigma factor for flagellar operon compare
GFF2732 +0.7 6.4 Phytochrome, two-component sensor histidine kinase (EC 2.7.3.-) compare
GFF5130 +0.7 1.9 Tricarboxylate transport transcriptional regulator TctD compare
GFF3522 +0.7 1.5 Sensory histidine kinase QseC compare
GFF4355 +0.7 2.2 PROBABLE TRANSMEMBRANE PROTEIN compare
GFF5072 +0.7 1.2 Taurine transport ATP-binding protein TauB compare
GFF2973 +0.7 1.0 TRAP-type C4-dicarboxylate transport system, small permease component compare
GFF1473 +0.7 2.8 Probable two-component sensor, near polyamine transporter compare
GFF3170 +0.7 1.6 hypothetical protein compare
GFF2509 +0.7 4.4 CAMP phosphodiesterases class-II:Metallo-beta-lactamase superfamily compare
GFF1337 +0.7 5.8 Type IV pilus biogenesis protein PilM compare
GFF4456 +0.7 1.4 Two-component system sensory histidine kinase compare
GFF5705 +0.7 4.2 Transcriptional regulator, GntR family compare
GFF2591 +0.7 3.9 VfmD protein compare
GFF3584 +0.7 1.4 FIG027190: Putative transmembrane protein compare
GFF1706 +0.7 1.1 YbaK/prolyl-tRNA synthetase associated region compare
GFF654 +0.7 2.7 Glyoxalase family protein compare
GFF1571 +0.7 1.7 Hypothetical Nudix-like regulator compare
GFF2039 +0.7 2.8 hypothetical protein compare
GFF5711 +0.7 1.2 hypothetical protein compare
GFF1294 +0.6 2.0 Ubiquinol--cytochrome c reductase, cytochrome B subunit (EC 1.10.2.2) compare
GFF1438 +0.6 4.2 Flagellar transcriptional activator FlhC compare
GFF5025 +0.6 1.4 hypothetical protein compare
GFF4435 +0.6 1.0 Conjugative transfer protein TrbB compare
GFF393 +0.6 5.1 Sensor histidine kinase compare
GFF1389 +0.6 0.8 General secretion pathway protein N compare
GFF458 +0.6 1.7 DGPFAETKE family protein compare
GFF1585 +0.6 1.1 Alkanesulfonates transport system permease protein compare
GFF1542 +0.6 1.8 3-oxoacyl-[acyl-carrier protein] reductase (EC 1.1.1.100) compare
GFF5658 +0.6 1.5 Methylsuccinyl-CoA dehydrogenase, predicted by (Erb et al, 2007) compare
GFF434 +0.6 0.8 3-dehydroquinate dehydratase II (EC 4.2.1.10) compare
GFF65 +0.6 1.3 Predicted secretion system X protein GspF-like compare
GFF86 +0.6 1.7 hypothetical protein compare
GFF5563 +0.6 1.4 hypothetical protein compare
GFF2713 +0.6 1.4 Aminopeptidase Y (Arg, Lys, Leu preference) (EC 3.4.11.15) compare
GFF1488 +0.6 1.9 Two-component system response regulator compare
GFF466 +0.6 0.8 Isochorismatase (EC 3.3.2.1) compare
GFF1270 +0.6 4.1 FIG016425: Soluble lytic murein transglycosylase and related regulatory proteins (some contain LysM/invasin domains) compare
GFF260 +0.6 1.5 Sulfur oxidation protein SoxY compare
GFF982 +0.6 1.3 Hydroxymethylglutaryl-CoA lyase (EC 4.1.3.4) compare
GFF392 +0.6 4.2 FOG: CheY-like receiver compare
GFF4437 +0.6 0.7 Conjugative transfer protein TrbD compare
GFF1336 +0.6 3.6 Type IV pilus biogenesis protein PilN compare
GFF3853 +0.6 1.2 DNA-binding protein HU-beta compare
GFF3146 +0.6 2.0 Thiol:disulfide involved in conjugative transfer compare
GFF1487 +0.6 2.4 Universal stress family protein compare
GFF2734 +0.6 1.0 hypothetical protein compare
GFF1071 +0.5 0.7 hypothetical protein compare
GFF1883 +0.5 4.6 hypothetical protein compare
GFF1416 +0.5 3.1 Flagellar basal-body P-ring formation protein FlgA compare
GFF5155 +0.5 3.4 Type IV fimbrial biogenesis protein PilV compare
GFF2848 +0.5 0.8 hypothetical protein compare
GFF600 +0.5 0.8 Phosphohydrolase (MutT/nudix family protein) compare
GFF3176 +0.5 1.5 Mobile element protein compare
GFF2710 +0.5 1.8 Transcriptional regulator, LysR family compare
GFF2897 +0.5 2.4 Enoyl-CoA hydratase (EC 4.2.1.17) compare
GFF468 +0.5 1.3 Ribose ABC transport system, permease protein RbsC (TC 3.A.1.2.1) compare
GFF1755 +0.5 2.7 FIG00454405: hypothetical protein compare
GFF1410 +0.5 2.3 Flagellar basal-body rod protein FlgG compare
GFF3759 +0.5 1.2 PlcB, ORFX, ORFP, ORFB, ORFA, ldh gene compare
GFF2692 +0.5 2.0 hypothetical protein compare
GFF1652 +0.5 1.4 similar to protocatechuate 4,5-dioxygenase beta chain compare
GFF3379 +0.5 2.9 putative integral membrane protein compare
GFF188 +0.5 2.4 probable extracellular solute-binding protein compare
GFF5707 +0.5 2.0 Ornithine cyclodeaminase (EC 4.3.1.12) compare
GFF2564 +0.5 2.0 Leucine-responsive regulatory protein, regulator for leucine (or lrp) regulon and high-affinity branched-chain amino acid transport system compare
GFF3788 +0.5 1.4 TRAP transporter solute receptor, unknown substrate 3 compare
GFF209 +0.5 1.4 Hypothetical protein with Rieske (2Fe-2S) region compare
GFF5327 +0.5 1.9 hypothetical protein compare
GFF106 +0.5 3.6 FIG00931285: hypothetical protein compare
GFF1049 +0.5 0.7 Nitrite-sensitive transcriptional repressor NsrR compare
GFF3622 +0.5 0.9 Bona fide RidA/YjgF/TdcF/RutC subgroup compare
GFF4999 +0.5 1.2 Stress responsive alpha-beta barrel domain protein Dabb compare
GFF4213 +0.5 3.8 FIG00932012: hypothetical protein compare
GFF5269 +0.5 2.0 Nitrogen regulation protein NR(I) compare
GFF3034 +0.5 2.3 Enoyl-CoA hydratase (EC 4.2.1.17) compare
GFF1566 +0.5 2.8 Enoyl-CoA hydratase (EC 4.2.1.17) compare
GFF5399 +0.5 3.4 autotransporter compare
GFF519 +0.5 1.9 Glutamate Aspartate periplasmic binding protein precursor GltI (TC 3.A.1.3.4) compare
GFF5390 +0.5 3.5 Transcriptional regulator, GntR family domain / Aspartate aminotransferase (EC 2.6.1.1) compare
GFF165 +0.5 1.4 FIG00932121: hypothetical protein compare
GFF3174 +0.5 1.0 response regulator, NarL-family compare
GFF4847 +0.5 2.5 Arylesterase precursor (EC 3.1.1.2) compare
GFF3391 +0.5 1.6 hypothetical protein compare
GFF3410 +0.5 1.5 Transcriptional regulator, LysR family compare
GFF4164 +0.5 1.0 FIG00457034: hypothetical protein compare
GFF3053 +0.5 1.8 Quinone oxidoreductase (EC 1.6.5.5) compare
GFF3549 +0.5 2.5 Alcohol dehydrogenase (EC 1.1.1.1) compare
GFF3547 +0.5 1.4 hypothetical protein compare
GFF5271 +0.5 2.6 hypothetical protein compare
GFF3471 +0.5 1.0 3-ketoacyl-CoA thiolase (EC 2.3.1.16) @ Acetyl-CoA acetyltransferase (EC 2.3.1.9) compare
GFF1821 +0.5 0.9 2-dehydropantoate 2-reductase (EC 1.1.1.169) compare
GFF927 +0.5 1.3 Acyl dehydratase compare
GFF3429 +0.5 1.7 Alkanesulfonates-binding protein compare
GFF3279 +0.5 1.4 Urea ABC transporter, ATPase protein UrtE compare
GFF3728 +0.5 1.5 Protein of unknown function DUF1428 compare
GFF419 +0.5 1.4 hypothetical protein compare
GFF3945 +0.5 0.9 hypothetical protein compare
GFF5555 +0.5 1.9 Protein containing transglutaminase-like domain, putative cysteine protease compare
GFF5448 +0.5 1.7 NADH-ubiquinone oxidoreductase, putative compare
GFF5435 +0.5 0.8 ABC-type tungstate transport system, ATP-binding protein compare
GFF2200 +0.5 2.8 Transketolase (EC 2.2.1.1) compare
GFF596 +0.5 3.1 Two-component sensor PilS compare
GFF131 +0.5 1.3 TRAP dicarboxylate transporter, DctQ subunit, unknown substrate 3 compare
GFF3538 +0.5 1.4 Copper tolerance protein compare
GFF5200 +0.5 1.9 putative exported protein compare
GFF3651 +0.5 0.9 Serine acetyltransferase (EC 2.3.1.30) compare
GFF1486 +0.5 3.5 hypothetical protein compare
GFF31 +0.5 1.0 Hydroxymethylpyrimidine ABC transporter, transmembrane component compare
GFF1577 +0.5 1.0 YciL protein compare
GFF3448 +0.5 1.8 Conjugative transfer protein TrbL compare
GFF5074 +0.4 1.0 hypothetical protein compare
GFF4023 +0.4 0.8 PUTATIVE METHYLTRANSFERASE compare
GFF1407 +0.4 1.9 Flagellar protein FlgJ [peptidoglycan hydrolase] (EC 3.2.1.-) compare
GFF5211 +0.4 0.7 hypothetical protein compare
GFF4727 +0.4 2.8 P-hydroxybenzoate hydroxylase (EC 1.14.13.2) compare
GFF4067 +0.4 2.2 Flagellar motor rotation protein MotB compare
GFF537 +0.4 1.9 Metallo-beta-lactamase family protein compare
GFF2399 +0.4 2.2 Catalyzes the cleavage of p-aminobenzoyl-glutamate to p-aminobenzoate and glutamate, subunit A compare
GFF2654 +0.4 2.0 Na(+) H(+) antiporter subunit F compare
GFF5157 +0.4 2.4 Type IV fimbrial biogenesis protein PilX compare
GFF5437 +0.4 1.8 Periplasmic molybdate-binding domain compare
GFF2201 +0.4 1.2 Phosphoglycolate phosphatase (EC 3.1.3.18) compare
GFF2896 +0.4 1.2 Butyryl-CoA dehydrogenase (EC 1.3.99.2) compare
GFF2739 +0.4 0.5 lipoprotein, putative compare
GFF3073 +0.4 1.1 Integral membrane protein compare
GFF2333 +0.4 2.2 3-oxoadipate CoA-transferase subunit B (EC 2.8.3.6) compare
GFF2983 +0.4 1.9 Enoyl-CoA hydratase (EC 4.2.1.17) compare
GFF1940 +0.4 2.6 Pirin-related protein compare
GFF1093 +0.4 1.3 Mobile element protein compare
GFF677 +0.4 1.0 FIG00433688: hypothetical protein compare
GFF2854 +0.4 1.2 Probable hydrolase compare
GFF2675 +0.4 1.1 Tartrate dehydrogenase (EC 1.1.1.93) @ Tartrate decarboxylase (EC 4.1.1.73) @ D-malic enzyme (EC 1.1.1.83) compare
GFF3065 +0.4 3.0 Periplasmic thiol:disulfide interchange protein DsbA compare
GFF3800 +0.4 1.2 2-pyrone-4,6-dicarboxylic acid hydrolase compare
GFF1414 +0.4 1.6 Flagellar basal-body rod protein FlgC compare
GFF3596 +0.4 3.1 Sensory box histidine kinase compare
GFF153 +0.4 1.8 Lactoylglutathione lyase (EC 4.4.1.5) compare
GFF2737 +0.4 1.7 Formyltetrahydrofolate deformylase (EC 3.5.1.10) compare
GFF3254 +0.4 1.3 Ribonuclease PH (EC 2.7.7.56) compare
GFF5156 +0.4 2.3 Type IV fimbrial biogenesis protein PilW compare
GFF4041 +0.4 1.8 hypothetical protein compare
GFF981 +0.4 1.5 Methylcrotonyl-CoA carboxylase biotin-containing subunit (EC 6.4.1.4) compare
GFF1394 +0.4 3.6 ABC transporter, fused ATPase and inner membrane subunits (EC 3.6.3.27) compare
GFF670 +0.4 2.3 putative exported protein compare
GFF3022 +0.4 2.0 ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component compare
GFF4974 +0.4 1.0 hypothetical protein compare
GFF3635 +0.4 1.9 Nitrogen regulation protein NR(I) compare
GFF3621 +0.4 1.2 Transcriptional regulator, LysR family compare
GFF2289 +0.4 1.8 Catechol 2,3-dioxygenase (EC 1.13.11.2) compare
GFF2728 +0.4 3.0 diguanylate cyclase/phosphodiesterase (GGDEF & EAL domains) with PAS/PAC sensor(s) compare
GFF2122 +0.4 2.0 hypothetical protein compare
GFF2961 +0.4 1.4 putative exported protein compare
GFF5009 +0.4 1.8 FIG01127817: hypothetical protein compare
GFF5140 +0.4 2.1 DNA-3-methyladenine glycosylase II (EC 3.2.2.21) compare
GFF2604 +0.4 2.3 Aspartate 1-decarboxylase (EC 4.1.1.11) compare
GFF789 +0.4 2.0 hypothetical protein compare
GFF308 +0.4 1.2 hypothetical protein compare
GFF3270 +0.4 1.1 Two-component response regulator compare
GFF4205 +0.4 1.5 hypothetical protein compare
GFF5158 +0.4 3.6 Type IV fimbrial biogenesis protein PilY1 compare
GFF3798 +0.4 2.0 4-oxalomesaconate hydratase (EC 4.2.1.83) compare
GFF3412 +0.4 1.4 Flavodoxin reductases (ferredoxin-NADPH reductases) family 1; Vanillate O-demethylase oxidoreductase (EC 1.14.13.-) compare
GFF595 +0.4 1.9 two component, sigma54 specific, transcriptional regulator, Fis family compare
GFF4835 +0.4 0.9 hypothetical protein compare
GFF4262 +0.4 2.2 Molybdopterin biosynthesis protein MoeA compare
GFF3783 +0.4 2.6 Trans-feruloyl-CoA synthase (EC 6.2.1.34) compare
GFF5410 +0.4 1.3 Bll5684 protein compare
GFF4770 +0.4 2.4 FIG004655: Polysaccharide deacetylase compare
GFF4473 +0.4 0.6 Potassium-transporting ATPase C chain (EC 3.6.3.12) (TC 3.A.3.7.1) compare
GFF366 +0.4 0.8 Probable transmembrane protein compare
GFF5489 +0.4 0.8 TPR domain protein, putative component of TonB system compare


Specific Phenotypes

For 1 genes in this experiment

For carbon source Ying_Others16 in Hydrogenophaga sp. GW460-11-11-14-LB1

For carbon source Ying_Others16 across organisms